CX305553

Overview
NameCX305553
Unique NameCX305553
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length379
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX305553_ssr87 microsatellite CX305553_ssr87:87..98. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig857 contig Ccv1_Contig857:184..560. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX305553 vs. ExPASy Swiss-Prot
Match: ITH5_CUCMA (Inhibitor of trypsin and hageman factor OS=Cucurbita maxima PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 8.388e-18
Identity = 40/66 (60.61%), Postives = 50/66 (75.76%), Query Frame = -3
Query:  132 CPRKSSWPELVGKNGEVAAVIIEKENPCVHAMVLLEGTPVTRGYRIDRVRVWVTKKGKVIRVPRIG 329
            CP KSSWP LVG  G VA  IIE++NP V A++L EGTPVT+ +R +RVR+WV K+G V+  PRIG
Sbjct:    3 CPGKSSWPHLVGVGGSVAKAIIERQNPNVKAVILEEGTPVTKDFRCNRVRIWVNKRGLVVSPPRIG 68          
BLAST of CX305553 vs. ExPASy Swiss-Prot
Match: BGIA_MOMCH (Glu S.griseus protease inhibitor OS=Momordica charantia PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 6.646e-15
Identity = 36/66 (54.55%), Postives = 46/66 (69.70%), Query Frame = -3
Query:  132 CPRKSSWPELVGKNGEVAAVIIEKENPCVHAMVLLEGTPVTRGYRIDRVRVWVTKKGKVIRVPRIG 329
            C  K SWP+LVG  G  A  +IE+ENP V A+++  G+PVT  +R DRVRVWVT++G V R P IG
Sbjct:    3 CQGKRSWPQLVGSTGAAAKAVIERENPRVRAVIVRVGSPVTADFRCDRVRVWVTERGIVARPPAIG 68          
BLAST of CX305553 vs. ExPASy Swiss-Prot
Match: ICI_LINUS (Proteinase inhibitor OS=Linum usitatissimum PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.763e-13
Identity = 35/65 (53.85%), Postives = 46/65 (70.77%), Query Frame = -3
Query:  135 CPRKSSWPELVGKNGEVAAVIIEKENPCVHAMVLLEGTPVTRGYRIDRVRVWVTKKGKVIRVPRI 329
            CP K++WPELVGK+G +AA  +E+EN  VHA+VL EG+ +T+ +R DRV V V   G V  VP I
Sbjct:    4 CPGKNAWPELVGKSGNMAAATVERENRNVHAIVLKEGSAMTKDFRCDRVWVIVNDHGVVTSVPHI 68          
BLAST of CX305553 vs. ExPASy Swiss-Prot
Match: HPI_HEVBR (Protease inhibitor HPI OS=Hevea brasiliensis GN=PI1 PE=1 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 4.763e-13
Identity = 36/69 (52.17%), Postives = 48/69 (69.57%), Query Frame = -3
Query:  132 AFDCPRKSSWPELVGKNGEVAAVIIEKENPCVHAMVLLEGTPVTRGYRIDRVRVWVTKKGKVIRVPRIG 338
            A  CP K+SWPELVG NG++AA II+ EN  V A+V+ EG P+T+    +RVRV+V +   V +VP IG
Sbjct:    2 ASQCPVKNSWPELVGTNGDIAAGIIQTENANVKAIVVKEGLPITQDLNFNRVRVFVDENRVVTQVPAIG 70          
BLAST of CX305553 vs. ExPASy Swiss-Prot
Match: ATSI_AMACA (Trypsin/subtilisin inhibitor OS=Amaranthus caudatus PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.614e-11
Identity = 34/68 (50.00%), Postives = 44/68 (64.71%), Query Frame = -3
Query:  135 AFDCPRKSSWPELVGKNGEVAAVIIEKENPCVHAMVLLEGTPVTRGYRIDRVRVWVTKKGKVIRVPRI 338
            A +CP K  WPELVG+ G  AA IIE+ENP V ++V  E +  T+ +R DRV V V   G V+R PR+
Sbjct:    1 ARECPGKQEWPELVGEYGYKAAAIIERENPNVRSIVKHERSGFTKDFRCDRVWVVVDSTGVVVRTPRV 68          
BLAST of CX305553 vs. ExPASy Swiss-Prot
Match: ICID_SOLTU (Wound-induced proteinase inhibitor 1 OS=Solanum tuberosum PE=1 SV=2)

HSP 1 Score: 66.2402 bits (160), Expect = 5.822e-11
Identity = 33/79 (41.77%), Postives = 50/79 (63.29%), Query Frame = -3
Query:  135 DGPNLV--MSAFDCPRKSSWPELVGKNGEVAAVIIEKENPCV-HAMVLLEGTPVTRGYRIDRVRVWVTKKGKVIRVPRI 362
            DGP ++     F+C  K  WPEL+G   ++A  IIEKEN  + +  +LL G+PVT  YR +RVR++    G V+++PR+
Sbjct:   28 DGPEVIELQKEFECNGKQRWPELIGVPTKLAKGIIEKENSLITNVQILLNGSPVTMDYRCNRVRLFDNILGDVVQIPRV 106          
BLAST of CX305553 vs. ExPASy Swiss-Prot
Match: ICI1_SOLPE (Wound-induced proteinase inhibitor 1 OS=Solanum peruvianum PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.604e-11
Identity = 35/83 (42.17%), Postives = 52/83 (62.65%), Query Frame = -3
Query:  135 DGPNLV--MSAFD----CPRKSSWPELVGKNGEVAAVIIEKENPCV-HAMVLLEGTPVTRGYRIDRVRVWVTKKGKVIRVPRI 362
            DGP ++  +  F+    C  K  WPEL+G     A  IIEKENP + +  +LL G+PVT+ +R DRVR++V   G V+++PR+
Sbjct:   28 DGPEVIKLLKEFESDSRCKGKQFWPELIGVPALYAKGIIEKENPSITNIPILLNGSPVTKDFRCDRVRLFVNILGDVVQIPRV 110          
The following BLAST results are available for this feature:
BLAST of CX305553 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
ITH5_CUCMA8.388e-1860.61Inhibitor of trypsin and hageman factor OS=Cucurbi... [more]
BGIA_MOMCH6.646e-1554.55Glu S.griseus protease inhibitor OS=Momordica char... [more]
ICI_LINUS4.763e-1353.85Proteinase inhibitor OS=Linum usitatissimum PE=1 S... [more]
HPI_HEVBR4.763e-1352.17Protease inhibitor HPI OS=Hevea brasiliensis GN=PI... [more]
ATSI_AMACA2.614e-1150.00Trypsin/subtilisin inhibitor OS=Amaranthus caudatu... [more]
ICID_SOLTU5.822e-1141.77Wound-induced proteinase inhibitor 1 OS=Solanum tu... [more]
ICI1_SOLPE7.604e-1142.17Wound-induced proteinase inhibitor 1 OS=Solanum pe... [more]
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Properties
Property NameValue
Genbank descriptionC18007B08Rv Drought1 Citrus clementina cDNA clone C18007B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX305553 ID=CX305553; Name=CX305553; organism=Citrus clementina; type=EST; length=379bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTGCAAGGAGCAAATTAATCCAAGC
ATGCATTATCTCATAACCTACAACAACACTTATTTCATTTATTTATTTAT
TAGTTATGGGATAGTCGATGGAGGAAATTCAACCAATACGAGGAACCCTA
ATCACCTTCCCTTTCTTGGTGACCCAAACACGAACCCTGTCAATCCTATA
GCCCCGAGTAACTGGAGTTCCCTCAAGTAATACCATTGCATGAACACAAG
GATTCTCTTTCTCTATAATAACAGCAGCAACCTCCCCGTTTTTACCAACC
AGCTCTGGCCATGAGCTCTTGCGTGGACAATCAAATGCAGACATGACTAG
GTTTGGTCCATCTTCCACAACTCCTTTTA
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