CX305554

Overview
NameCX305554
Unique NameCX305554
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length376
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig886 contig Ccv1_Contig886:290..665. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX305554 vs. ExPASy Swiss-Prot
Match: ASP_THECC (21 kDa seed protein OS=Theobroma cacao GN=ASP PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.300e-15
Identity = 44/110 (40.00%), Postives = 63/110 (57.27%), Query Frame = 3 
Query:   33 IVKVSTDVNLRFPVKVSVKPCNEEPLWKVDSYDDPL----IVTGGSEGHPGAETLLNWFKIEKAGNFSYGGVYNIVHCPSVCLSCPRRCNKIGVSTKDGVRRLLLIGDHE 350
            +V+VSTDVN+ F V +  + C+   +W++D+YD+      + T G +G PG  TL +WFKIEKAG       Y    CPSVC SC   C+ IG  + D  +  L + D+E
Sbjct:   97 VVRVSTDVNIEF-VPIRDRLCSTSTVWRLDNYDNSAGKWWVTTDGVKGEPGPNTLCSWFKIEKAGVLG----YKFRFCPSVCDSCTTLCSDIGRHSDDDGQIRLALSDNE 201
[Close]
BLAST of CX305554 vs. ExPASy Swiss-Prot
Match: MIRA_RICDU (Miraculin OS=Richadella dulcifica PE=1 SV=3)

HSP 1 Score: 80.1073 bits (196), Expect = 3.782e-15
Identity = 41/110 (37.27%), Postives = 62/110 (56.36%), Query Frame = 3 
Query:   33 IVKVSTDVNLRFPVKVSVKPCN--EEPLWKVDSYDDP----LIVTGGSEGHPGAETLLNWFKIEKAGNFSYGGVYNIVHCPSVCLSCPRRCNKIGVSTKDGVRRLLLIGD 344
            +V+VSTD+N+ F    +  PC      +W++D YD+      +  GG +G+PG ET+ +WFKIE+   F   G Y +V CP+VC SC  +C  +G+      RR L + D
Sbjct:  104 VVRVSTDLNINFS---AFMPCRWTSSTVWRLDKYDESTGQYFVTIGGVKGNPGPETISSWFKIEE---FCGSGFYKLVFCPTVCGSCKVKCGDVGIYIDQKGRRRLALSD 207
The following BLAST results are available for this feature:
BLAST of CX305554 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
ASP_THECC1.300e-1540.0021 kDa seed protein OS=Theobroma cacao GN=ASP PE=2... [more]
MIRA_RICDU3.782e-1537.27Miraculin OS=Richadella dulcifica PE=1 SV=3[more]
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Properties
Property NameValue
Genbank descriptionC18007B09Rv Drought1 Citrus clementina cDNA clone C18007B09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX305554 ID=CX305554; Name=CX305554; organism=Citrus clementina; type=EST; length=376bp
GCGGGAGATTACTTCCGTACGACAATTACAAAATTGTCAAGGTATCCACT
GATGTCAACCTGAGATTCCCCGTAAAAGTTTCTGTTAAGCCCTGTAATGA
AGAACCATTGTGGAAAGTTGATAGCTATGACGATCCATTAATTGTAACCG
GCGGAAGTGAGGGCCACCCAGGAGCTGAAACGTTGCTAAATTGGTTTAAG
ATTGAGAAAGCTGGAAATTTTTCATATGGTGGTGTATACAATATTGTCCA
TTGTCCGAGTGTCTGTCTATCTTGTCCTAGACGCTGCAACAAAATTGGCG
TTTCAACTAAGGATGGCGTTCGACGTCTGCTTCTAATTGGTGATCATGAA
CCGGCTTTGAATGTTCTGTTTTTTCC
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