CX305555

Overview
NameCX305555
Unique NameCX305555
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length478
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX305555_ssr135 microsatellite CX305555_ssr135:135..146. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig9835 contig Ccv1_Contig9835:200..677. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX305555 vs. ExPASy Swiss-Prot
Match: PR4A_TOBAC (Pathogenesis-related protein PR-4A OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 7.115e-39
Identity = 71/90 (78.89%), Postives = 78/90 (86.67%), Query Frame = -3
Query:  207 DANKPLAWRQKYGWTAFCHSGGPIGQAACGRCLRVTNSGTGAQQIVRIVDQCANGGLDLDEGVFKKLDTNGIGYQQGFLTVSYEFVNCND 476
            DA+KPLAWRQKYGWTAFC   GP GQ +CGRCLRVTN+GTG Q  VRIVDQC+NGGLDLD  VF +LDTNG+GYQQG LTV+YEFVNCND
Sbjct:   58 DADKPLAWRQKYGWTAFCGPAGPRGQDSCGRCLRVTNTGTGTQTTVRIVDQCSNGGLDLDVNVFNQLDTNGVGYQQGHLTVNYEFVNCND 147          
BLAST of CX305555 vs. ExPASy Swiss-Prot
Match: PR4B_TOBAC (Pathogenesis-related protein PR-4B OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 4.612e-38
Identity = 70/90 (77.78%), Postives = 77/90 (85.56%), Query Frame = -3
Query:  207 DANKPLAWRQKYGWTAFCHSGGPIGQAACGRCLRVTNSGTGAQQIVRIVDQCANGGLDLDEGVFKKLDTNGIGYQQGFLTVSYEFVNCND 476
            DA+KPLAWRQKYGWTAFC   GP GQ +CGRCLRVTN+GTG Q  VRIVDQC+NGGLDLD  VF +LDTNG+GYQQG L V+YEFVNCND
Sbjct:   58 DADKPLAWRQKYGWTAFCGPAGPRGQDSCGRCLRVTNTGTGTQATVRIVDQCSNGGLDLDVNVFNQLDTNGLGYQQGHLIVNYEFVNCND 147          
BLAST of CX305555 vs. ExPASy Swiss-Prot
Match: PRP2_SOLLC (Pathogenesis-related protein P2 OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 7.363e-36
Identity = 65/88 (73.86%), Postives = 75/88 (85.23%), Query Frame = -3
Query:  213 DANKPLAWRQKYGWTAFCHSGGPIGQAACGRCLRVTNSGTGAQQIVRIVDQCANGGLDLDEGVFKKLDTNGIGYQQGFLTVSYEFVNC 476
            DA+KPL WR++YGWTAFC   GP GQA+CGRCLRVTN+GTG Q+ VRIVDQC NGGLDLD  VF +LDTNG+GYQ+G L V+YEFVNC
Sbjct:   56 DADKPLEWRRRYGWTAFCGPAGPTGQASCGRCLRVTNTGTGTQETVRIVDQCRNGGLDLDVNVFNRLDTNGLGYQRGNLNVNYEFVNC 143          
BLAST of CX305555 vs. ExPASy Swiss-Prot
Match: BARW_HORVU (Barwin OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 1.063e-34
Identity = 67/91 (73.63%), Postives = 75/91 (82.42%), Query Frame = -3
Query:  207 DANKPLAWRQKYGWTAFCHSGGPIGQAACGRCLRVTNSGTGAQQIVRIVDQCANGGLDLD-EGVFKKLDTNGIGYQQGFLTVSYEFVNCND 476
            DA+KPL+WR KYGWTAFC   GP GQAACG+CLRVTN  TGAQ   RIVDQCANGGLDLD + VF K+DTNGIGYQQG L V+Y+FV+C D
Sbjct:   35 DASKPLSWRSKYGWTAFCGPAGPRGQAACGKCLRVTNPATGAQITARIVDQCANGGLDLDWDTVFTKIDTNGIGYQQGHLNVNYQFVDCRD 125          
BLAST of CX305555 vs. ExPASy Swiss-Prot
Match: WHW2_WHEAT (Wheatwin-2 OS=Triticum aestivum GN=PR4B PE=1 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 9.001e-34
Identity = 66/91 (72.53%), Postives = 74/91 (81.32%), Query Frame = -3
Query:  207 DANKPLAWRQKYGWTAFCHSGGPIGQAACGRCLRVTNSGTGAQQIVRIVDQCANGGLDLD-EGVFKKLDTNGIGYQQGFLTVSYEFVNCND 476
            DA+KPL+WR KYGWTAFC   G  GQAACG+CLRVTN  TGAQ   RIVDQCANGGLDLD + VF K+DTNGIGYQQG L V+Y+FV+C D
Sbjct:   58 DASKPLSWRSKYGWTAFCGPAGAHGQAACGKCLRVTNPATGAQITARIVDQCANGGLDLDWDTVFTKIDTNGIGYQQGHLNVNYQFVDCRD 148          
BLAST of CX305555 vs. ExPASy Swiss-Prot
Match: WIN2_SOLTU (Wound-induced protein WIN2 OS=Solanum tuberosum GN=WIN2 PE=2 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 4.467e-33
Identity = 62/90 (68.89%), Postives = 74/90 (82.22%), Query Frame = -3
Query:  207 DANKPLAWRQKYGWTAFCHSGGPIGQAACGRCLRVTNSGTGAQQIVRIVDQCANGGLDLDEGVFKKLDTNGIGYQQGFLTVSYEFVNCND 476
            DANKP AWR KYGWTAFC   GP G+ +CG+CLRVTN+ TGAQ  VRIVDQC+NGGLDLD  VF+++DT+G+G QQG L V+Y+FVNC D
Sbjct:  109 DANKPYAWRSKYGWTAFCGPVGPRGRDSCGKCLRVTNTRTGAQTTVRIVDQCSNGGLDLDINVFQQIDTDGVGNQQGHLIVNYQFVNCGD 198          
BLAST of CX305555 vs. ExPASy Swiss-Prot
Match: WHW1_WHEAT (Wheatwin-1 OS=Triticum aestivum GN=PR4A PE=1 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 5.834e-33
Identity = 64/91 (70.33%), Postives = 74/91 (81.32%), Query Frame = -3
Query:  207 DANKPLAWRQKYGWTAFCHSGGPIGQAACGRCLRVTNSGTGAQQIVRIVDQCANGGLDLD-EGVFKKLDTNGIGYQQGFLTVSYEFVNCND 476
            DA+KPL+WR KYGWTAFC   G  GQA+CG+CL+VTN  TGAQ   RIVDQCANGGLDLD + VF K+DTNGIGYQQG L V+Y+FV+C D
Sbjct:   56 DASKPLSWRSKYGWTAFCGPAGAHGQASCGKCLQVTNPATGAQITARIVDQCANGGLDLDWDTVFTKIDTNGIGYQQGHLNVNYQFVDCRD 146          
BLAST of CX305555 vs. ExPASy Swiss-Prot
Match: HEVE_HEVBR (Pro-hevein OS=Hevea brasiliensis GN=HEV1 PE=1 SV=2)

HSP 1 Score: 137.502 bits (345), Expect = 2.896e-32
Identity = 59/90 (65.56%), Postives = 75/90 (83.33%), Query Frame = -3
Query:  207 DANKPLAWRQKYGWTAFCHSGGPIGQAACGRCLRVTNSGTGAQQIVRIVDQCANGGLDLDEGVFKKLDTNGIGYQQGFLTVSYEFVNCND 476
            DANKP +WR KYGWTAFC   G  GQ++CG+CL VTN+GTGA+  VRIVDQC+NGGLDLD  VF++LDT+G GY++G +TV+Y+FV+C D
Sbjct:  100 DANKPYSWRSKYGWTAFCGPVGAHGQSSCGKCLSVTNTGTGAKTTVRIVDQCSNGGLDLDVNVFRQLDTDGKGYERGHITVNYQFVDCGD 189          
BLAST of CX305555 vs. ExPASy Swiss-Prot
Match: WIN_SOYBN (Wound-induced protein (Fragment) OS=Glycine max GN=WIN PE=2 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 8.425e-32
Identity = 59/87 (67.82%), Postives = 72/87 (82.76%), Query Frame = -3
Query:  207 KPLAWRQKYGWTAFCHSGGPIGQAACGRCLRVTNSGTGAQQIVRIVDQCANGGLDLDEGVFKKLDTNGIGYQQGFLTVSYEFVNCND 467
            KP +WR KYGWTAFC   GP G+ +CG+CLRVTN+GTGA  IVRIVDQC+NGGLDLD GVF ++DT+G GYQQG L V+Y+FV+C +
Sbjct:    1 KPYSWRSKYGWTAFCGPVGPRGRDSCGKCLRVTNTGTGANTIVRIVDQCSNGGLDLDVGVFNRIDTDGRGYQQGHLIVNYQFVDCGN 87          
BLAST of CX305555 vs. ExPASy Swiss-Prot
Match: WIN1_SOLTU (Wound-induced protein WIN1 OS=Solanum tuberosum GN=WIN1 PE=2 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 8.425e-32
Identity = 60/90 (66.67%), Postives = 74/90 (82.22%), Query Frame = -3
Query:  207 DANKPLAWRQKYGWTAFCHSGGPIGQAACGRCLRVTNSGTGAQQIVRIVDQCANGGLDLDEGVFKKLDTNGIGYQQGFLTVSYEFVNCND 476
            DANKPL+WR+KYGWTAFC   GP G+ +CG+CLRVTN+ TGAQ  VRIVDQC+NGGLDLD  VF+++DT+G G  QG L V+Y+FV+C D
Sbjct:  110 DANKPLSWRKKYGWTAFCGPVGPRGRDSCGKCLRVTNTRTGAQTTVRIVDQCSNGGLDLDVNVFRQIDTDGNGNHQGHLIVNYQFVDCGD 199          
The following BLAST results are available for this feature:
BLAST of CX305555 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
PR4A_TOBAC7.115e-3978.89Pathogenesis-related protein PR-4A OS=Nicotiana ta... [more]
PR4B_TOBAC4.612e-3877.78Pathogenesis-related protein PR-4B OS=Nicotiana ta... [more]
PRP2_SOLLC7.363e-3673.86Pathogenesis-related protein P2 OS=Solanum lycoper... [more]
BARW_HORVU1.063e-3473.63Barwin OS=Hordeum vulgare PE=1 SV=1[more]
WHW2_WHEAT9.001e-3472.53Wheatwin-2 OS=Triticum aestivum GN=PR4B PE=1 SV=1[more]
WIN2_SOLTU4.467e-3368.89Wound-induced protein WIN2 OS=Solanum tuberosum GN... [more]
WHW1_WHEAT5.834e-3370.33Wheatwin-1 OS=Triticum aestivum GN=PR4A PE=1 SV=1[more]
HEVE_HEVBR2.896e-3265.56Pro-hevein OS=Hevea brasiliensis GN=HEV1 PE=1 SV=2[more]
WIN_SOYBN8.425e-3267.82Wound-induced protein (Fragment) OS=Glycine max GN... [more]
WIN1_SOLTU8.425e-3266.67Wound-induced protein WIN1 OS=Solanum tuberosum GN... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC18007B10Rv Drought1 Citrus clementina cDNA clone C18007B10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX305555 ID=CX305555; Name=CX305555; organism=Citrus clementina; type=EST; length=478bp
CGAGGGACTTTTTTTTTTTTTTTTTTTTTGGATAAAAAAAGGAAACTTTT
ATTACATAACTGTAGTGCCCATGAGCACTTCTTGATACTTCATCAGAAGT
TTTATTTTATTTATGAACTAAGTATATAGAGGGATAATTAATTAATAAAT
TAACCCTATTACAGCATTAAGCTTCGATCGATCATGGAATTATAGATGGT
GCTTTAATCATTGCAGTTCACAAACTCGTAGCTGACAGTAAGGAAGCCTT
GTTGATAGCCTATTCCATTGGTGTCCAATTTCTTGAACACTCCTTCGTCC
AAATCTAAGCCTCCATTGGCACACTGATCAACAATTCTCACAATTTGTTG
GGCTCCTGTACCACTGTTTGTGACCCTTAAGCACCTGCCACAAGCAGCTT
GTCCAATGGGTCCGCCCGAATGACAGAAAGCAGTCCAGCCATATTTCTGG
CGCCAGGCCAAGGGCTTGTTGGCATCCC
back to top