CX305793

Overview
NameCX305793
Unique NameCX305793
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length368
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13527 contig Ccv1_Contig13527:477..844. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX305793 vs. ExPASy Swiss-Prot
Match: PSAL_CUCSA (Photosystem I reaction center subunit XI, chloroplastic OS=Cucumis sativus GN=PSAL PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 3.925e-28
Identity = 59/76 (77.63%), Postives = 64/76 (84.21%), Query Frame = -3
Query:  139 VILSICLTIYGIVSFNEGEPSTAPGLTLTGRKKEPDQLQTADGWAKXXXXXXXXGISGVIWAYFLLYVLNLPYFVK 366
            VILS+CLT+YG+ SFNEGEPSTAP LTLTGRKK PD LQTADGWAK        GISGVIWAYFLLYVL+LPY+VK
Sbjct:  142 VILSVCLTMYGVASFNEGEPSTAPSLTLTGRKKTPDPLQTADGWAKFSGGFFFGGISGVIWAYFLLYVLDLPYYVK 217          
BLAST of CX305793 vs. ExPASy Swiss-Prot
Match: PSAL_ARATH (Photosystem I reaction center subunit XI, chloroplastic OS=Arabidopsis thaliana GN=PSAL PE=1 SV=2)

HSP 1 Score: 121.324 bits (303), Expect = 1.492e-27
Identity = 60/76 (78.95%), Postives = 63/76 (82.89%), Query Frame = -3
Query:  139 VILSICLTIYGIVSFNEGEPSTAPGLTLTGRKKEPDQLQTADGWAKXXXXXXXXGISGVIWAYFLLYVLNLPYFVK 366
            VILS+CLTIYGI SF EGEPS AP LTLTGRKK+PDQLQTADGWAK        GISGV WAYFLLYVL+LPYFVK
Sbjct:  144 VILSMCLTIYGISSFKEGEPSIAPSLTLTGRKKQPDQLQTADGWAKFTGGFFFGGISGVTWAYFLLYVLDLPYFVK 219          
BLAST of CX305793 vs. ExPASy Swiss-Prot
Match: PSAL_HORVU (Photosystem I reaction center subunit XI, chloroplastic OS=Hordeum vulgare GN=PSAL PE=1 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 4.062e-25
Identity = 52/75 (69.33%), Postives = 62/75 (82.67%), Query Frame = -3
Query:  139 ILSICLTIYGIVSFNEGEPSTAPGLTLTGRKKEPDQLQTADGWAKXXXXXXXXGISGVIWAYFLLYVLNLPYFVK 363
            ILS+CLT+YG+ SFNEGEPSTAP LTLTGRKKE D+LQTA+GW++        G+SG +WAYFLLYVL+LPYF K
Sbjct:  135 ILSVCLTMYGVASFNEGEPSTAPVLTLTGRKKEADKLQTAEGWSQFTGGFFFGGVSGAVWAYFLLYVLDLPYFFK 209          
BLAST of CX305793 vs. ExPASy Swiss-Prot
Match: PSAL_SPIOL (Photosystem I reaction center subunit XI, chloroplastic OS=Spinacia oleracea GN=PSAL PE=1 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 1.182e-24
Identity = 53/76 (69.74%), Postives = 61/76 (80.26%), Query Frame = -3
Query:  139 VILSICLTIYGIVSFNEGEPSTAPGLTLTGRKKEPDQLQTADGWAKXXXXXXXXGISGVIWAYFLLYVLNLPYFVK 366
            VILS+CLT+YGI SF EGEPS AP LTLTGRKK+PDQLQ+ADGWAK        G+SGV WA FL+YVL+LPY+ K
Sbjct:  141 VILSMCLTMYGIASFKEGEPSIAPALTLTGRKKQPDQLQSADGWAKFTGGFFFGGVSGVTWACFLMYVLDLPYYFK 216          
The following BLAST results are available for this feature:
BLAST of CX305793 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
PSAL_CUCSA3.925e-2877.63Photosystem I reaction center subunit XI, chloropl... [more]
PSAL_ARATH1.492e-2778.95Photosystem I reaction center subunit XI, chloropl... [more]
PSAL_HORVU4.062e-2569.33Photosystem I reaction center subunit XI, chloropl... [more]
PSAL_SPIOL1.182e-2469.74Photosystem I reaction center subunit XI, chloropl... [more]
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Properties
Property NameValue
Genbank descriptionC18010D02Rv Drought1 Citrus clementina cDNA clone C18010D02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX305793 ID=CX305793; Name=CX305793; organism=Citrus clementina; type=EST; length=368bp
TTTTTTTTTTTTTTTTTTTTTTTTAGAAACTGAAGCAAGTTTCATTTGCA
ATAAAAATCCCAAACAGGTAGATTTACAGAGTAGCAAATTGAGATACATG
GGATCTTAAAACCAAAAAGTAGACGTTACATATTTCTATTTAACGAAGTA
AGGAAGGTTAAGGACATAAAGCAGGAAATAAGCCCAAATGACACCAGAAA
TTCCACCAAAGAAGAATCCTCCAGTGAACTTAGCCCACCCATCAGCTGTT
TGCAACTGATCAGGCTCCTTCTTCCTTCCGGTCAATGTTAAGCCTGGAGC
AGTGGATGGCTCTCCTTCATTGAATGAAACAATTCCATAGATTGTCAAGC
AAATGCTGAGGATCACAA
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