CX305806

Overview
NameCX305806
Unique NameCX305806
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length367
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig360 contig Ccv1_Contig360:19..385. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX305806 vs. ExPASy Swiss-Prot
Match: JMT_ARATH (Jasmonate O-methyltransferase OS=Arabidopsis thaliana GN=JMT PE=1 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 5.681e-19
Identity = 49/114 (42.98%), Postives = 70/114 (61.40%), Query Frame = 1
Query:   10 NMVSEGLIEEEKVNCFNIPQYTPSPAEIKSEVIKEGSFTIDHLEVSEVNWNAYQNGFKFNEAVDAF-------NDGGYNVANCMRAVAEPLLVSQFGESIIDELFKRYREIVAD 330
            +M  EG+IEEEK++ FN P Y  S  E+K  + KEGSF+ID LE+S ++W   + G    E+ D            G  V+N +RAV EP+L   FGE+++DELF+RY +IV +
Sbjct:  259 SMAKEGIIEEEKIDAFNAPYYAASSEELKMVIEKEGSFSIDRLEISPIDW---EGGSISEESYDLVIRSKPEALASGRRVSNTIRAVVEPMLEPTFGENVMDELFERYAKIVGE 369          
BLAST of CX305806 vs. ExPASy Swiss-Prot
Match: JMT_BRARP (Jasmonate O-methyltransferase OS=Brassica rapa subsp. pekinensis GN=JMT PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.159e-18
Identity = 46/113 (40.71%), Postives = 69/113 (61.06%), Query Frame = 1
Query:   10 NMVSEGLIEEEKVNCFNIPQYTPSPAEIKSEVIKEGSFTIDHLEVSEVNWNAYQNGFKFNEAVDAFN------DGGYNVANCMRAVAEPLLVSQFGESIIDELFKRYREIVAD 330
            ++  EG+IEEE ++ FN P Y  SP E+K  + KEGSF+ID LE+S V+W   + G   +++ D           G  VA  +RAV EP+L   FG+ ++DELF+RY ++V +
Sbjct:  263 SLAKEGIIEEENIDAFNAPYYAASPEELKMAIEKEGSFSIDRLEISPVDW---EGGSISDDSYDIVRFKPEALASGRRVAKTIRAVVEPMLEPTFGQKVMDELFERYAKLVGE 372          
BLAST of CX305806 vs. ExPASy Swiss-Prot
Match: BAMT_ANTMA (Benzoate carboxyl methyltransferase OS=Antirrhinum majus GN=BAMT PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 6.281e-18
Identity = 43/122 (35.25%), Postives = 76/122 (62.30%), Query Frame = 1
Query:   10 NMVSEGLIEEEKVNCFNIPQYTPSPAEIKSEVIKEGSFTIDHLEVSEVNWNA---YQNGFKFNEAVDAFNDGGYNVANCMRAVAEPLLVSQFGESIIDELFKRYREIVADRMSKEKTKFIDV 366
            +MV+EGL++ + +  FNIP Y+P   E+++ ++ EGSFT+D LEV  V W+A     +  + + ++      G  VA+C+RA+ EP+L S FG +I+D LF +Y + + + +S E + +  +
Sbjct:  236 DMVAEGLVKMDDLYSFNIPIYSPCTREVEAAILSEGSFTLDRLEVFRVCWDASDYTDDDDQQDPSIFGKQRSGKFVADCVRAITEPMLASHFGSTIMDLLFGKYAKKIVEHLSVENSSYFSI 357          
The following BLAST results are available for this feature:
BLAST of CX305806 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
JMT_ARATH5.681e-1942.98Jasmonate O-methyltransferase OS=Arabidopsis thali... [more]
JMT_BRARP2.159e-1840.71Jasmonate O-methyltransferase OS=Brassica rapa sub... [more]
BAMT_ANTMA6.281e-1835.25Benzoate carboxyl methyltransferase OS=Antirrhinum... [more]
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Properties
Property NameValue
Genbank descriptionC18010E03Rv Drought1 Citrus clementina cDNA clone C18010E03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX305806 ID=CX305806; Name=CX305806; organism=Citrus clementina; type=EST; length=367bp
GCGGGCAACAATATGGTCTCCGAGGGACTCATAGAAGAAGAGAAAGTGAA
TTGTTTCAACATTCCGCAGTATACACCATCACCAGCTGAAATAAAATCGG
AGGTTATAAAGGAAGGATCCTTCACCATTGATCACCTTGAGGTTTCTGAA
GTTAACTGGAACGCTTATCAGAATGGTTTTAAGTTTAACGAGGCCGTTGA
TGCATTTAATGATGGAGGATACAACGTTGCGAATTGCATGAGAGCTGTGG
CCGAGCCCTTGCTTGTTAGTCAGTTTGGTGAATCAATCATTGATGAGCTG
TTTAAAAGGTACAGGGAAATTGTTGCCGATCGCATGTCTAAGGAAAAGAC
TAAGTTTATCGACGTGA
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