CX305809

Overview
NameCX305809
Unique NameCX305809
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length325
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig860 contig Ccv1_Contig860:260..584. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX305809 vs. ExPASy Swiss-Prot
Match: ASP_THECC (21 kDa seed protein OS=Theobroma cacao GN=ASP PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.090e-17
Identity = 45/107 (42.06%), Postives = 67/107 (62.62%), Query Frame = 1 
Query:   10 VIQLPSDMQNGIELTLSPYNNST-IVRETTDLNLRFSVLLSGRD-YCNEQPLWKVDNYDAASGKWFITTGGLDGHPGAETLLNWFKLEKIGNFPGIYKIVHCPSVCE 324
            V+Q  SD+ NG  +  S  ++   +VR +TD+N+ F  +   RD  C+   +W++DNYD ++GKW++TT G+ G PG  TL +WFK+EK G     YK   CPSVC+
Sbjct:   73 VVQRRSDLDNGTPVIFSNADSKDDVVRVSTDVNIEFVPI---RDRLCSTSTVWRLDNYDNSAGKWWVTTDGVKGEPGPNTLCSWFKIEKAGVLG--YKFRFCPSVCD 174
[Close]
BLAST of CX305809 vs. ExPASy Swiss-Prot
Match: MIRA_RICDU (Miraculin OS=Richadella dulcifica PE=1 SV=3)

HSP 1 Score: 83.5741 bits (205), Expect = 3.507e-16
Identity = 40/105 (38.10%), Postives = 64/105 (60.95%), Query Frame = 1 
Query:   10 VIQLPSDMQNGIELTLSPYN-NSTIVRETTDLNLRFSVLLSGRDYCNEQPLWKVDNYDAASGKWFITTGGLDGHPGAETLLNWFKLEKIGNFPGIYKIVHCPSVC 321
            V+Q   ++ +   L   P N    +VR +TDLN+ FS  +  R       +W++D YD ++G++F+T GG+ G+PG ET+ +WFK+E+     G YK+V CP+VC
Sbjct:   80 VVQTRKEVDHDRPLAFFPENPKEDVVRVSTDLNINFSAFMPCR--WTSSTVWRLDKYDESTGQYFVTIGGVKGNPGPETISSWFKIEEFCG-SGFYKLVFCPTVC 181
The following BLAST results are available for this feature:
BLAST of CX305809 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
ASP_THECC1.090e-1742.0621 kDa seed protein OS=Theobroma cacao GN=ASP PE=2... [more]
MIRA_RICDU3.507e-1638.10Miraculin OS=Richadella dulcifica PE=1 SV=3[more]
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Properties
Property NameValue
Genbank descriptionC18010E07Rv Drought1 Citrus clementina cDNA clone C18010E07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX305809 ID=CX305809; Name=CX305809; organism=Citrus clementina; type=EST; length=325bp
GCGGGGGACGTTATCCAATTACCTTCTGATATGCAAAATGGAATCGAATT
AACACTGTCACCGTATAACAATTCTACAATTGTCCGAGAAACCACTGATC
TCAACTTGAGATTCTCAGTGTTGCTATCTGGACGTGACTATTGTAACGAA
CAACCGTTGTGGAAAGTTGATAATTATGACGCGGCATCAGGCAAATGGTT
TATAACAACCGGGGGACTTGATGGTCACCCTGGAGCTGAAACTTTGCTAA
ATTGGTTTAAGCTTGAGAAAATTGGAAATTTTCCAGGTATATACAAAATC
GTTCATTGTCCATCCGTTTGCGAGT
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