CX305818

Overview
NameCX305818
Unique NameCX305818
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length380
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig868 contig Ccv1_Contig868:1..380. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX305818 vs. ExPASy Swiss-Prot
Match: ARD2_ARATH (1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 2 OS=Arabidopsis thaliana GN=ARD2 PE=2 SV=1)

HSP 1 Score: 214.927 bits (546), Expect = 1.010e-55
Identity = 98/109 (89.91%), Postives = 105/109 (96.33%), Query Frame = 3
Query:   54 APQDPREEVIQAWYMDDSDEDQRLPHHKDPKEFVSLDQLSELGVLSWRLDADNYETDEELKKIREDRGYSYMDFCEVCPEKLPNYEEKIKNFFEEHLHTDEEIRYCVAG 380
            A +D REEVIQAWYMDDS+EDQRLPHHKDPKEFVSLD+L+ELGVLSWRLDADNYETDE+LKKIRE RGYSYMDFCEVCPEKLPNYE K+K+FFEEHLHTDEEIRYCVAG
Sbjct:    4 AVKDGREEVIQAWYMDDSEEDQRLPHHKDPKEFVSLDKLAELGVLSWRLDADNYETDEDLKKIRESRGYSYMDFCEVCPEKLPNYEVKVKSFFEEHLHTDEEIRYCVAG 112          
BLAST of CX305818 vs. ExPASy Swiss-Prot
Match: ARD3_ARATH (1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 3 OS=Arabidopsis thaliana GN=ARD3 PE=2 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 3.837e-55
Identity = 96/107 (89.72%), Postives = 104/107 (97.20%), Query Frame = 3
Query:   60 QDPREEVIQAWYMDDSDEDQRLPHHKDPKEFVSLDQLSELGVLSWRLDADNYETDEELKKIREDRGYSYMDFCEVCPEKLPNYEEKIKNFFEEHLHTDEEIRYCVAG 380
            +D REEVIQAWYMDDS+EDQRLPHHKDPKEF+SLD+L+ELGVLSWRLDADNYETDE+LKKIRE RGYSYMDFCEVCPEKLPNYE K+K+FFEEHLHTDEEIRYCVAG
Sbjct:    6 KDGREEVIQAWYMDDSEEDQRLPHHKDPKEFLSLDKLAELGVLSWRLDADNYETDEDLKKIRESRGYSYMDFCEVCPEKLPNYEVKVKSFFEEHLHTDEEIRYCVAG 112          
BLAST of CX305818 vs. ExPASy Swiss-Prot
Match: ARD1_ARATH (1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 1 OS=Arabidopsis thaliana GN=ARD1 PE=2 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 1.155e-51
Identity = 90/109 (82.57%), Postives = 100/109 (91.74%), Query Frame = 3
Query:   54 APQDPREEVIQAWYMDDSDEDQRLPHHKDPKEFVSLDQLSELGVLSWRLDADNYETDEELKKIREDRGYSYMDFCEVCPEKLPNYEEKIKNFFEEHLHTDEEIRYCVAG 380
            A +D  EEVIQAWY+D+ +EDQ+LPHHKDPKEFVSLD+L+ELGVL WRLDADNYETDEELK+IRE RGYSYMD CEVCPEKLPNYEEK+K FFEEHLH DEEIRYC+AG
Sbjct:    4 AAKDQTEEVIQAWYLDNKEEDQKLPHHKDPKEFVSLDKLAELGVLCWRLDADNYETDEELKRIRESRGYSYMDLCEVCPEKLPNYEEKVKMFFEEHLHIDEEIRYCLAG 112          
BLAST of CX305818 vs. ExPASy Swiss-Prot
Match: ARD2_ORYSJ (1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 2 OS=Oryza sativa subsp. japonica GN=ARD2 PE=2 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 4.109e-49
Identity = 84/107 (78.50%), Postives = 98/107 (91.59%), Query Frame = 3
Query:   60 QDPREEVIQAWYMDDSDEDQRLPHHKDPKEFVSLDQLSELGVLSWRLDADNYETDEELKKIREDRGYSYMDFCEVCPEKLPNYEEKIKNFFEEHLHTDEEIRYCVAG 380
            QD +EEVI+AWYMDDS+EDQRLPHH++PKEF+ L +LSELG+LSWRL+AD++E DE LKKIRE RGYSYMD C+VCPEKLPNYE K+KNFFEEHLHTDEEIRYC+ G
Sbjct:    6 QDGKEEVIEAWYMDDSEEDQRLPHHREPKEFIPLSKLSELGILSWRLNADDWENDENLKKIREARGYSYMDICDVCPEKLPNYEAKLKNFFEEHLHTDEEIRYCLEG 112          
BLAST of CX305818 vs. ExPASy Swiss-Prot
Match: ARD2_ORYSI (1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 2 OS=Oryza sativa subsp. indica GN=ARD2 PE=2 SV=2)

HSP 1 Score: 192.971 bits (489), Expect = 4.109e-49
Identity = 84/107 (78.50%), Postives = 98/107 (91.59%), Query Frame = 3
Query:   60 QDPREEVIQAWYMDDSDEDQRLPHHKDPKEFVSLDQLSELGVLSWRLDADNYETDEELKKIREDRGYSYMDFCEVCPEKLPNYEEKIKNFFEEHLHTDEEIRYCVAG 380
            QD +EEVI+AWYMDDS+EDQRLPHH++PKEF+ L +LSELG+LSWRL+AD++E DE LKKIRE RGYSYMD C+VCPEKLPNYE K+KNFFEEHLHTDEEIRYC+ G
Sbjct:    6 QDGKEEVIEAWYMDDSEEDQRLPHHREPKEFIPLSKLSELGILSWRLNADDWENDENLKKIREARGYSYMDICDVCPEKLPNYEAKLKNFFEEHLHTDEEIRYCLEG 112          
BLAST of CX305818 vs. ExPASy Swiss-Prot
Match: ARD1_ORYSJ (1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 1 OS=Oryza sativa subsp. japonica GN=ARD1 PE=2 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 4.252e-46
Identity = 79/107 (73.83%), Postives = 96/107 (89.72%), Query Frame = 3
Query:   60 QDPREEVIQAWYMDDSDEDQRLPHHKDPKEFVSLDQLSELGVLSWRLDADNYETDEELKKIREDRGYSYMDFCEVCPEKLPNYEEKIKNFFEEHLHTDEEIRYCVAG 380
            QD + EVI+AWYMDDS+EDQRLPHH++PKEF+ +D+L+ELGV+SWRL+ DN+E  E LK+IRE RGYSY+D C+VCPEKLPNYE KIK+FFEEHLHTDEEIRYC+ G
Sbjct:    6 QDGKTEVIEAWYMDDSEEDQRLPHHREPKEFIHVDKLTELGVISWRLNPDNWENCENLKRIREARGYSYVDICDVCPEKLPNYETKIKSFFEEHLHTDEEIRYCLEG 112          
BLAST of CX305818 vs. ExPASy Swiss-Prot
Match: ARD1_ORYSI (1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 1 OS=Oryza sativa subsp. indica GN=ARD1 PE=1 SV=2)

HSP 1 Score: 182.956 bits (463), Expect = 4.252e-46
Identity = 79/107 (73.83%), Postives = 96/107 (89.72%), Query Frame = 3
Query:   60 QDPREEVIQAWYMDDSDEDQRLPHHKDPKEFVSLDQLSELGVLSWRLDADNYETDEELKKIREDRGYSYMDFCEVCPEKLPNYEEKIKNFFEEHLHTDEEIRYCVAG 380
            QD + EVI+AWYMDDS+EDQRLPHH++PKEF+ +D+L+ELGV+SWRL+ DN+E  E LK+IRE RGYSY+D C+VCPEKLPNYE KIK+FFEEHLHTDEEIRYC+ G
Sbjct:    6 QDGKTEVIEAWYMDDSEEDQRLPHHREPKEFIHVDKLTELGVISWRLNPDNWENCENLKRIREARGYSYVDICDVCPEKLPNYETKIKSFFEEHLHTDEEIRYCLEG 112          
BLAST of CX305818 vs. ExPASy Swiss-Prot
Match: ARD4_ARATH (1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 4 OS=Arabidopsis thaliana GN=ARD4 PE=2 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 2.414e-41
Identity = 71/100 (71.00%), Postives = 87/100 (87.00%), Query Frame = 3
Query:   81 IQAWYMDDSDEDQRLPHHKDPKEFVSLDQLSELGVLSWRLDADNYETDEELKKIREDRGYSYMDFCEVCPEKLPNYEEKIKNFFEEHLHTDEEIRYCVAG 380
            ++AW+MDDS+EDQRLPHH++PKE VSLD L+ELGVL W+L+ +NYE D EL KIREDRGY YMD  ++CPEK+ NYEEK+KNFF EH+H DEEIRYC+AG
Sbjct:    3 LEAWFMDDSNEDQRLPHHRNPKELVSLDYLAELGVLYWKLNPENYENDSELSKIREDRGYDYMDLLDLCPEKVSNYEEKLKNFFTEHIHKDEEIRYCLAG 102          
BLAST of CX305818 vs. ExPASy Swiss-Prot
Match: ARD3_ORYSJ (Putative 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 3 OS=Oryza sativa subsp. japonica GN=ARD3 PE=3 SV=3)

HSP 1 Score: 143.665 bits (361), Expect = 2.859e-34
Identity = 66/106 (62.26%), Postives = 82/106 (77.36%), Query Frame = 3
Query:   72 EEVIQAWYMDDSD---EDQRLPHHKDPKEFVSLDQLSELGVLSWRLDADNYETDEELKKIREDRGYSYMDFCEVCPEKLPNYEEKIKNFFEEHLHTDEEIRYCVAG 380
            EEV+QAWYMDD D   EDQRLPH + P + + L +L +LG+++ RLDADN+E DE LK +RE RGY +MD  E+ PEK+PNYE  IK FFEEHLHTDEE+RYC+ G
Sbjct:    9 EEVVQAWYMDDDDNAEEDQRLPHRRQPDDLLPLAKLLDLGLVAMRLDADNHEHDENLKIMREQRGYLHMDIVELTPEKMPNYEVMIKRFFEEHLHTDEEVRYCLDG 114          
BLAST of CX305818 vs. ExPASy Swiss-Prot
Match: MTND_HUMAN (1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase OS=Homo sapiens GN=ADI1 PE=1 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 1.201e-32
Identity = 62/101 (61.39%), Postives = 75/101 (74.26%), Query Frame = 3
Query:   78 VIQAWYMDDSDEDQRLPHHKDPKEFVSLDQLSELGVLSWRLDADNYETDEELKKIREDRGYSYMDFCEVCPEKLPNYEEKIKNFFEEHLHTDEEIRYCVAG 380
            ++QAWYMDD+  D R PH  DP   V L+QL  LGVL W+LDAD YE D EL+KIR +R YS+MD   +C +KLPNYEEKIK F+EEHLH D+EIRY + G
Sbjct:    1 MVQAWYMDDAPGDPRQPHRPDPGRPVGLEQLRRLGVLYWKLDADKYENDPELEKIRRERNYSWMDIITICKDKLPNYEEKIKMFYEEHLHLDDEIRYILDG 101          
The following BLAST results are available for this feature:
BLAST of CX305818 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
ARD2_ARATH1.010e-5589.911,2-dihydroxy-3-keto-5-methylthiopentene dioxygena... [more]
ARD3_ARATH3.837e-5589.721,2-dihydroxy-3-keto-5-methylthiopentene dioxygena... [more]
ARD1_ARATH1.155e-5182.571,2-dihydroxy-3-keto-5-methylthiopentene dioxygena... [more]
ARD2_ORYSJ4.109e-4978.501,2-dihydroxy-3-keto-5-methylthiopentene dioxygena... [more]
ARD2_ORYSI4.109e-4978.501,2-dihydroxy-3-keto-5-methylthiopentene dioxygena... [more]
ARD1_ORYSJ4.252e-4673.831,2-dihydroxy-3-keto-5-methylthiopentene dioxygena... [more]
ARD1_ORYSI4.252e-4673.831,2-dihydroxy-3-keto-5-methylthiopentene dioxygena... [more]
ARD4_ARATH2.414e-4171.001,2-dihydroxy-3-keto-5-methylthiopentene dioxygena... [more]
ARD3_ORYSJ2.859e-3462.26Putative 1,2-dihydroxy-3-keto-5-methylthiopentene ... [more]
MTND_HUMAN1.201e-3261.391,2-dihydroxy-3-keto-5-methylthiopentene dioxygena... [more]

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Properties
Property NameValue
Genbank descriptionC18010F06Rv Drought1 Citrus clementina cDNA clone C18010F06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX305818 ID=CX305818; Name=CX305818; organism=Citrus clementina; type=EST; length=380bp
GCGGGATTGCGTTGCCACCAAGCGTTGTTCAAAGAATTTCAGAAACCATG
GTCGCCCCTCAGGATCCTAGAGAGGAAGTTATTCAGGCATGGTACATGGA
TGATAGTGATGAAGATCAAAGACTCCCCCATCACAAGGATCCAAAGGAAT
TTGTGTCCCTGGACCAGCTTTCTGAACTTGGAGTACTCAGCTGGCGATTA
GATGCTGATAACTATGAAACTGATGAGGAACTGAAGAAGATTCGTGAAGA
TCGCGGATATTCTTACATGGACTTTTGTGAGGTTTGCCCAGAAAAACTGC
CAAATTATGAAGAGAAGATCAAAAACTTTTTCGAAGAACATCTTCATACA
GATGAAGAGATCCGCTACTGTGTGGCAGGA
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