CX305820

Overview
NameCX305820
Unique NameCX305820
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length348
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9835 contig Ccv1_Contig9835:1..343. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX305820 vs. ExPASy Swiss-Prot
Match: PR4A_TOBAC (Pathogenesis-related protein PR-4A OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 5.250e-33
Identity = 63/103 (61.17%), Postives = 76/103 (73.79%), Query Frame = 3
Query:   42 KNMGRFGLCV-ILSVCLLMXXXXXXXXXNVRATYHLYHPEQIGWDLTAASAFCATWDANKPLAWRQKYGWTAFCHSGGPIGQAACGRCLRVTNSGTGAQQIVR 347
            + +  + LCV +L + ++M         NVR+TYHLY+P+ I WDL AASAFCATWDA+KPLAWRQKYGWTAFC   GP GQ +CGRCLRVTN+GTG Q  VR
Sbjct:    2 ERVNNYKLCVALLIISMVMAMAAAQSATNVRSTYHLYNPQNINWDLRAASAFCATWDADKPLAWRQKYGWTAFCGPAGPRGQDSCGRCLRVTNTGTGTQTTVR 104          
BLAST of CX305820 vs. ExPASy Swiss-Prot
Match: PR4B_TOBAC (Pathogenesis-related protein PR-4B OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 8.954e-33
Identity = 63/103 (61.17%), Postives = 76/103 (73.79%), Query Frame = 3
Query:   42 KNMGRFGLCV-ILSVCLLMXXXXXXXXXNVRATYHLYHPEQIGWDLTAASAFCATWDANKPLAWRQKYGWTAFCHSGGPIGQAACGRCLRVTNSGTGAQQIVR 347
            + +  + LCV +L + ++M         NVR+TYHLY+P+ I WDL AASAFCATWDA+KPLAWRQKYGWTAFC   GP GQ +CGRCLRVTN+GTG Q  VR
Sbjct:    2 ERVNNYKLCVALLIMSVMMAMAAAQSATNVRSTYHLYNPQNINWDLRAASAFCATWDADKPLAWRQKYGWTAFCGPAGPRGQDSCGRCLRVTNTGTGTQATVR 104          
BLAST of CX305820 vs. ExPASy Swiss-Prot
Match: PRP2_SOLLC (Pathogenesis-related protein P2 OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 4.913e-31
Identity = 59/96 (61.46%), Postives = 70/96 (72.92%), Query Frame = 3
Query:   63 LCVILSVC-LLMXXXXXXXXXNVRATYHLYHPEQIGWDLTAASAFCATWDANKPLAWRQKYGWTAFCHSGGPIGQAACGRCLRVTNSGTGAQQIVR 347
            LCV   V  ++M         NVRATYHLY+P+ I WDL  AS +CATWDA+KPL WR++YGWTAFC   GP GQA+CGRCLRVTN+GTG Q+ VR
Sbjct:    7 LCVAFFVINMMMAVAAAQSATNVRATYHLYNPQNINWDLRTASVYCATWDADKPLEWRRRYGWTAFCGPAGPTGQASCGRCLRVTNTGTGTQETVR 102          
BLAST of CX305820 vs. ExPASy Swiss-Prot
Match: WIN1_SOLTU (Wound-induced protein WIN1 OS=Solanum tuberosum GN=WIN1 PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 2.696e-29
Identity = 52/75 (69.33%), Postives = 64/75 (85.33%), Query Frame = 3
Query:  123 NVRATYHLYHPEQIGWDLTAASAFCATWDANKPLAWRQKYGWTAFCHSGGPIGQAACGRCLRVTNSGTGAQQIVR 347
            NVRATYH+Y+P+ +GWDL A SA+C+TWDANKPL+WR+KYGWTAFC   GP G+ +CG+CLRVTN+ TGAQ  VR
Sbjct:   82 NVRATYHIYNPQNVGWDLNAVSAYCSTWDANKPLSWRKKYGWTAFCGPVGPRGRDSCGKCLRVTNTRTGAQTTVR 156          
BLAST of CX305820 vs. ExPASy Swiss-Prot
Match: WIN2_SOLTU (Wound-induced protein WIN2 OS=Solanum tuberosum GN=WIN2 PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 6.006e-29
Identity = 52/75 (69.33%), Postives = 62/75 (82.67%), Query Frame = 3
Query:  123 NVRATYHLYHPEQIGWDLTAASAFCATWDANKPLAWRQKYGWTAFCHSGGPIGQAACGRCLRVTNSGTGAQQIVR 347
            NVRATYH+Y+P+ +GWDL A SA+C+TWDANKP AWR KYGWTAFC   GP G+ +CG+CLRVTN+ TGAQ  VR
Sbjct:   81 NVRATYHIYNPQNVGWDLNAVSAYCSTWDANKPYAWRSKYGWTAFCGPVGPRGRDSCGKCLRVTNTRTGAQTTVR 155          
BLAST of CX305820 vs. ExPASy Swiss-Prot
Match: HEVE_HEVBR (Pro-hevein OS=Hevea brasiliensis GN=HEV1 PE=1 SV=2)

HSP 1 Score: 117.857 bits (294), Expect = 1.636e-26
Identity = 50/75 (66.67%), Postives = 60/75 (80.00%), Query Frame = 3
Query:  123 NVRATYHLYHPEQIGWDLTAASAFCATWDANKPLAWRQKYGWTAFCHSGGPIGQAACGRCLRVTNSGTGAQQIVR 347
            NV ATYHLY+ +  GWDL AASA+C+TWDANKP +WR KYGWTAFC   G  GQ++CG+CL VTN+GTGA+  VR
Sbjct:   72 NVLATYHLYNSQDHGWDLNAASAYCSTWDANKPYSWRSKYGWTAFCGPVGAHGQSSCGKCLSVTNTGTGAKTTVR 146          
BLAST of CX305820 vs. ExPASy Swiss-Prot
Match: BARW_HORVU (Barwin OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 2.790e-26
Identity = 53/77 (68.83%), Postives = 58/77 (75.32%), Query Frame = 3
Query:  123 NVRATYHLYHPEQIGWDL--TAASAFCATWDANKPLAWRQKYGWTAFCHSGGPIGQAACGRCLRVTNSGTGAQQIVR 347
            +VRATYH Y P Q  WDL   A SA+CATWDA+KPL+WR KYGWTAFC   GP GQAACG+CLRVTN  TGAQ   R
Sbjct:    5 DVRATYHYYRPAQNNWDLGAPAVSAYCATWDASKPLSWRSKYGWTAFCGPAGPRGQAACGKCLRVTNPATGAQITAR 81          
BLAST of CX305820 vs. ExPASy Swiss-Prot
Match: HEVL_ARATH (Hevein-like protein OS=Arabidopsis thaliana GN=HEL PE=1 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 3.644e-26
Identity = 50/75 (66.67%), Postives = 57/75 (76.00%), Query Frame = 3
Query:  123 NVRATYHLYHPEQIGWDLTAASAFCATWDANKPLAWRQKYGWTAFCHSGGPIGQAACGRCLRVTNSGTGAQQIVR 347
            NVRATYH Y+P Q  WDL A SA+C+TWDA+KP AWR KYGWTAFC   GP GQA+CG+CLRV N+ T A   VR
Sbjct:   76 NVRATYHFYNPAQNNWDLRAVSAYCSTWDADKPYAWRSKYGWTAFCGPAGPRGQASCGKCLRVKNTRTNAAVTVR 150          
BLAST of CX305820 vs. ExPASy Swiss-Prot
Match: WHW2_WHEAT (Wheatwin-2 OS=Triticum aestivum GN=PR4B PE=1 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 6.215e-26
Identity = 53/77 (68.83%), Postives = 57/77 (74.03%), Query Frame = 3
Query:  123 NVRATYHLYHPEQIGWDL--TAASAFCATWDANKPLAWRQKYGWTAFCHSGGPIGQAACGRCLRVTNSGTGAQQIVR 347
            NVRATYH Y P Q  WDL   A SA+CATWDA+KPL+WR KYGWTAFC   G  GQAACG+CLRVTN  TGAQ   R
Sbjct:   28 NVRATYHYYRPAQNNWDLGAPAVSAYCATWDASKPLSWRSKYGWTAFCGPAGAHGQAACGKCLRVTNPATGAQITAR 104          
BLAST of CX305820 vs. ExPASy Swiss-Prot
Match: WHW1_WHEAT (Wheatwin-1 OS=Triticum aestivum GN=PR4A PE=1 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 1.808e-25
Identity = 53/97 (54.64%), Postives = 62/97 (63.92%), Query Frame = 3
Query:   63 LCVILSVCLLMXXXXXXXXXNVRATYHLYHPEQIGWDL--TAASAFCATWDANKPLAWRQKYGWTAFCHSGGPIGQAACGRCLRVTNSGTGAQQIVR 347
            + V+  +C            NVRATYH Y P Q  WDL   A SA+CATWDA+KPL+WR KYGWTAFC   G  GQA+CG+CL+VTN  TGAQ   R
Sbjct:    6 MLVVALLCAAAAAATAQQATNVRATYHYYRPAQNNWDLGAPAVSAYCATWDASKPLSWRSKYGWTAFCGPAGAHGQASCGKCLQVTNPATGAQITAR 102          
The following BLAST results are available for this feature:
BLAST of CX305820 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
PR4A_TOBAC5.250e-3361.17Pathogenesis-related protein PR-4A OS=Nicotiana ta... [more]
PR4B_TOBAC8.954e-3361.17Pathogenesis-related protein PR-4B OS=Nicotiana ta... [more]
PRP2_SOLLC4.913e-3161.46Pathogenesis-related protein P2 OS=Solanum lycoper... [more]
WIN1_SOLTU2.696e-2969.33Wound-induced protein WIN1 OS=Solanum tuberosum GN... [more]
WIN2_SOLTU6.006e-2969.33Wound-induced protein WIN2 OS=Solanum tuberosum GN... [more]
HEVE_HEVBR1.636e-2666.67Pro-hevein OS=Hevea brasiliensis GN=HEV1 PE=1 SV=2[more]
BARW_HORVU2.790e-2668.83Barwin OS=Hordeum vulgare PE=1 SV=1[more]
HEVL_ARATH3.644e-2666.67Hevein-like protein OS=Arabidopsis thaliana GN=HEL... [more]
WHW2_WHEAT6.215e-2668.83Wheatwin-2 OS=Triticum aestivum GN=PR4B PE=1 SV=1[more]
WHW1_WHEAT1.808e-2554.64Wheatwin-1 OS=Triticum aestivum GN=PR4A PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC18010F08Rv Drought1 Citrus clementina cDNA clone C18010F08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX305820 ID=CX305820; Name=CX305820; organism=Citrus clementina; type=EST; length=348bp
GCGGGGGTGCAACGGATAAGTTAAGCTTAGAACATTAAGAGAAAAATATG
GGGAGGTTCGGTCTCTGTGTGATTCTGTCAGTTTGTCTACTGATGGCAGC
TGCTTCTGCCCAAAGTGCTTCTAATGTGAGAGCCACGTATCATCTCTACC
ACCCTGAGCAAATTGGATGGGACTTGACGGCAGCGAGCGCTTTCTGCGCA
ACATGGGATGCCAACAAGCCCTTGGCCTGGCGCCAGAAATATGGCTGGAC
TGCTTTCTGTCATTCGGGCGGACCCATTGGACAAGCTGCTTGTGGCAGGT
GCTTAAGGGTCACAAACAGTGGTACAGGAGCCCAACAAATTGTGAGAA
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