CX305824

Overview
NameCX305824
Unique NameCX305824
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length335
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX305824_ssr126 microsatellite CX305824_ssr126:126..137. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig9835 contig Ccv1_Contig9835:334..668. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX305824 vs. ExPASy Swiss-Prot
Match: PR4A_TOBAC (Pathogenesis-related protein PR-4A OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 7.729e-16
Identity = 36/45 (80.00%), Postives = 41/45 (91.11%), Query Frame = -1
Query:  198 VRIVDRCANGGLDLDEGVFKKLDTNGIGYQQGFLTVSYEFVNCND 332
            VRIVD+C+NGGLDLD  VF +LDTNG+GYQQG LTV+YEFVNCND
Sbjct:  103 VRIVDQCSNGGLDLDVNVFNQLDTNGVGYQQGHLTVNYEFVNCND 147          
BLAST of CX305824 vs. ExPASy Swiss-Prot
Match: PR4B_TOBAC (Pathogenesis-related protein PR-4B OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 5.010e-15
Identity = 35/45 (77.78%), Postives = 40/45 (88.89%), Query Frame = -1
Query:  198 VRIVDRCANGGLDLDEGVFKKLDTNGIGYQQGFLTVSYEFVNCND 332
            VRIVD+C+NGGLDLD  VF +LDTNG+GYQQG L V+YEFVNCND
Sbjct:  103 VRIVDQCSNGGLDLDVNVFNQLDTNGLGYQQGHLIVNYEFVNCND 147          
BLAST of CX305824 vs. ExPASy Swiss-Prot
Match: PRP2_SOLLC (Pathogenesis-related protein P2 OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.124e-13
Identity = 32/43 (74.42%), Postives = 37/43 (86.05%), Query Frame = -1
Query:  204 VRIVDRCANGGLDLDEGVFKKLDTNGIGYQQGFLTVSYEFVNC 332
            VRIVD+C NGGLDLD  VF +LDTNG+GYQ+G L V+YEFVNC
Sbjct:  101 VRIVDQCRNGGLDLDVNVFNRLDTNGLGYQRGNLNVNYEFVNC 143          
BLAST of CX305824 vs. ExPASy Swiss-Prot
Match: WIN_SOYBN (Wound-induced protein (Fragment) OS=Glycine max GN=WIN PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.045e-12
Identity = 31/46 (67.39%), Postives = 40/46 (86.96%), Query Frame = -1
Query:  198 IVRIVDRCANGGLDLDEGVFKKLDTNGIGYQQGFLTVSYEFVNCND 335
            IVRIVD+C+NGGLDLD GVF ++DT+G GYQQG L V+Y+FV+C +
Sbjct:   42 IVRIVDQCSNGGLDLDVGVFNRIDTDGRGYQQGHLIVNYQFVDCGN 87          
BLAST of CX305824 vs. ExPASy Swiss-Prot
Match: WHW2_WHEAT (Wheatwin-2 OS=Triticum aestivum GN=PR4B PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.364e-12
Identity = 33/45 (73.33%), Postives = 39/45 (86.67%), Query Frame = -1
Query:  198 RIVDRCANGGLDLD-EGVFKKLDTNGIGYQQGFLTVSYEFVNCND 329
            RIVD+CANGGLDLD + VF K+DTNGIGYQQG L V+Y+FV+C D
Sbjct:  104 RIVDQCANGGLDLDWDTVFTKIDTNGIGYQQGHLNVNYQFVDCRD 148          
BLAST of CX305824 vs. ExPASy Swiss-Prot
Match: WHW1_WHEAT (Wheatwin-1 OS=Triticum aestivum GN=PR4A PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.364e-12
Identity = 33/45 (73.33%), Postives = 39/45 (86.67%), Query Frame = -1
Query:  198 RIVDRCANGGLDLD-EGVFKKLDTNGIGYQQGFLTVSYEFVNCND 329
            RIVD+CANGGLDLD + VF K+DTNGIGYQQG L V+Y+FV+C D
Sbjct:  102 RIVDQCANGGLDLDWDTVFTKIDTNGIGYQQGHLNVNYQFVDCRD 146          
BLAST of CX305824 vs. ExPASy Swiss-Prot
Match: BARW_HORVU (Barwin OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.364e-12
Identity = 33/45 (73.33%), Postives = 39/45 (86.67%), Query Frame = -1
Query:  198 RIVDRCANGGLDLD-EGVFKKLDTNGIGYQQGFLTVSYEFVNCND 329
            RIVD+CANGGLDLD + VF K+DTNGIGYQQG L V+Y+FV+C D
Sbjct:   81 RIVDQCANGGLDLDWDTVFTKIDTNGIGYQQGHLNVNYQFVDCRD 125          
BLAST of CX305824 vs. ExPASy Swiss-Prot
Match: WIN2_SOLTU (Wound-induced protein WIN2 OS=Solanum tuberosum GN=WIN2 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.039e-12
Identity = 30/45 (66.67%), Postives = 39/45 (86.67%), Query Frame = -1
Query:  198 VRIVDRCANGGLDLDEGVFKKLDTNGIGYQQGFLTVSYEFVNCND 332
            VRIVD+C+NGGLDLD  VF+++DT+G+G QQG L V+Y+FVNC D
Sbjct:  154 VRIVDQCSNGGLDLDINVFQQIDTDGVGNQQGHLIVNYQFVNCGD 198          
BLAST of CX305824 vs. ExPASy Swiss-Prot
Match: HEVE_HEVBR (Pro-hevein OS=Hevea brasiliensis GN=HEV1 PE=1 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 3.969e-12
Identity = 29/45 (64.44%), Postives = 40/45 (88.89%), Query Frame = -1
Query:  198 VRIVDRCANGGLDLDEGVFKKLDTNGIGYQQGFLTVSYEFVNCND 332
            VRIVD+C+NGGLDLD  VF++LDT+G GY++G +TV+Y+FV+C D
Sbjct:  145 VRIVDQCSNGGLDLDVNVFRQLDTDGKGYERGHITVNYQFVDCGD 189          
BLAST of CX305824 vs. ExPASy Swiss-Prot
Match: HEVL_ARATH (Hevein-like protein OS=Arabidopsis thaliana GN=HEL PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.573e-11
Identity = 28/45 (62.22%), Postives = 37/45 (82.22%), Query Frame = -1
Query:  198 VRIVDRCANGGLDLDEGVFKKLDTNGIGYQQGFLTVSYEFVNCND 332
            VRIVD+C+NGGLDLD  +F ++DT+G GYQQG L V Y+FV+C +
Sbjct:  149 VRIVDQCSNGGLDLDVAMFNQIDTDGFGYQQGHLIVDYQFVDCGN 193          
The following BLAST results are available for this feature:
BLAST of CX305824 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
PR4A_TOBAC7.729e-1680.00Pathogenesis-related protein PR-4A OS=Nicotiana ta... [more]
PR4B_TOBAC5.010e-1577.78Pathogenesis-related protein PR-4B OS=Nicotiana ta... [more]
PRP2_SOLLC6.124e-1374.42Pathogenesis-related protein P2 OS=Solanum lycoper... [more]
WIN_SOYBN1.045e-1267.39Wound-induced protein (Fragment) OS=Glycine max GN... [more]
WHW2_WHEAT1.364e-1273.33Wheatwin-2 OS=Triticum aestivum GN=PR4B PE=1 SV=1[more]
WHW1_WHEAT1.364e-1273.33Wheatwin-1 OS=Triticum aestivum GN=PR4A PE=1 SV=1[more]
BARW_HORVU1.364e-1273.33Barwin OS=Hordeum vulgare PE=1 SV=1[more]
WIN2_SOLTU3.039e-1266.67Wound-induced protein WIN2 OS=Solanum tuberosum GN... [more]
HEVE_HEVBR3.969e-1264.44Pro-hevein OS=Hevea brasiliensis GN=HEV1 PE=1 SV=2[more]
HEVL_ARATH2.573e-1162.22Hevein-like protein OS=Arabidopsis thaliana GN=HEL... [more]

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Properties
Property NameValue
Genbank descriptionC18010G01Rv Drought1 Citrus clementina cDNA clone C18010G01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX305824 ID=CX305824; Name=CX305824; organism=Citrus clementina; type=EST; length=335bp
TTTTTTTTTTTTTTTTTTTTTTGGAAAAAAAGGAAACTTTTATTACATAA
CTGTAGTGCCCATGAGCACTTCTTGATACTTCATCAGAAGTTTTATTTTA
TTTATGAACTAAGTATATAGAGGGATAATTAATTAATAAATTAACCCTAT
TACAGCATTAAGCTTCGATCGATCATGGAATTATAGATGGTGCTTTAATC
ATTGCAGTTCACAAACTCGTAGCTGACAGTAAGGAAGCCTTGTTGATAGC
CTATTCCATTGGTGTCCAATTTCTTGAACACTCCTTCGTCCAAATCTAAG
CCTCCATTGGCACACCGATCAACAATTCTCACAAT
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