CX305827

Overview
NameCX305827
Unique NameCX305827
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length318
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10111 contig Ccv1_Contig10111:604..921. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX305827 vs. ExPASy Swiss-Prot
Match: ASP_THECC (21 kDa seed protein OS=Theobroma cacao GN=ASP PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 1.293e-23
Identity = 49/102 (48.04%), Postives = 69/102 (67.65%), Query Frame = 1
Query:   10 IVRESTDLNLRFVGLLSGSKQCNELPLWKVDNYDASSGRWFITTGGLDGHPGAETLLNWFKLEKTNLPGAYKIVHCPSVCESCVKFCSSVGRFSFEDGVRRL 315
            +VR STD+N+ FV +    + C+   +W++DNYD S+G+W++TT G+ G PG  TL +WFK+EK  + G YK   CPSVC+SC   CS +GR S +DG  RL
Sbjct:   97 VVRVSTDVNIEFVPIRD--RLCSTSTVWRLDNYDNSAGKWWVTTDGVKGEPGPNTLCSWFKIEKAGVLG-YKFRFCPSVCDSCTTLCSDIGRHSDDDGQIRL 195          
BLAST of CX305827 vs. ExPASy Swiss-Prot
Match: MIRA_RICDU (Miraculin OS=Richadella dulcifica PE=1 SV=3)

HSP 1 Score: 93.5893 bits (231), Expect = 3.295e-19
Identity = 44/102 (43.14%), Postives = 65/102 (63.73%), Query Frame = 1
Query:   10 IVRESTDLNLRFVGLLSGSKQCNELPLWKVDNYDASSGRWFITTGGLDGHPGAETLLNWFKLEKTNLPGAYKIVHCPSVCESCVKFCSSVGRFSFEDGVRRL 315
            +VR STDLN+ F   +    +     +W++D YD S+G++F+T GG+ G+PG ET+ +WFK+E+    G YK+V CP+VC SC   C  VG +  + G RRL
Sbjct:  104 VVRVSTDLNINFSAFMPC--RWTSSTVWRLDKYDESTGQYFVTIGGVKGNPGPETISSWFKIEEFCGSGFYKLVFCPTVCGSCKVKCGDVGIYIDQKGRRRL 203          
BLAST of CX305827 vs. ExPASy Swiss-Prot
Match: LSPI_CARPA (Latex serine proteinase inhibitor OS=Carica papaya PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.303e-11
Identity = 39/103 (37.86%), Postives = 58/103 (56.31%), Query Frame = 1
Query:   10 IVRESTDLNLRFVGLLSGSKQCNELPLWKVDNYDASSGRWFITTGGLDGHPGAETLLNWFKLEKTNLPGAYKIVHCPSVCESCVKFCSSVGRFSFEDGVRRLV 318
            IV ES DLN++F   ++    CNE   WKVD +    G W +T GG  G+ G E+  + FK++K  LP +YK   CPS   + +  C++V  F  +  +RRL+
Sbjct:   72 IVFESVDLNVKFNITIN----CNETTAWKVDRFPGVIG-WTVTLGGEKGYHGFESTHSMFKIKKAGLPFSYKFHFCPSYPRTRLIPCNNVDIFFDKYRIRRLI 169          
The following BLAST results are available for this feature:
BLAST of CX305827 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
ASP_THECC1.293e-2348.0421 kDa seed protein OS=Theobroma cacao GN=ASP PE=2... [more]
MIRA_RICDU3.295e-1943.14Miraculin OS=Richadella dulcifica PE=1 SV=3[more]
LSPI_CARPA3.303e-1137.86Latex serine proteinase inhibitor OS=Carica papaya... [more]
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Properties
Property NameValue
Genbank descriptionC18010G05Rv Drought1 Citrus clementina cDNA clone C18010G05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX305827 ID=CX305827; Name=CX305827; organism=Citrus clementina; type=EST; length=318bp
GCGGGTACAATTGTCAGAGAATCCACTGATCTCAACTTGAGATTCGTAGG
GTTACTATCTGGAAGTAAGCAATGTAACGAGCTACCGTTGTGGAAAGTTG
ATAACTATGACGCTTCATCAGGCAGATGGTTTATAACAACCGGGGGACTT
GATGGTCACCCTGGAGCTGAAACGTTGCTAAATTGGTTTAAGCTTGAGAA
AACTAATCTACCAGGTGCATACAAAATTGTTCATTGTCCATCTGTTTGCG
AGTCTTGCGTCAAATTCTGCAGCAGCGTTGGCCGCTTTTCGTTTGAGGAT
GGCGTTCGACGTCTGGTT
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