CX305835

Overview
NameCX305835
Unique NameCX305835
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length321
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX305835_ssr233 microsatellite CX305835_ssr233:233..244. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig857 contig Ccv1_Contig857:230..548. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX305835 vs. ExPASy Swiss-Prot
Match: ITH5_CUCMA (Inhibitor of trypsin and hageman factor OS=Cucurbita maxima PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 5.621e-19
Identity = 42/65 (64.62%), Postives = 52/65 (80.00%), Query Frame = 2
Query:    8 PRKSSWPELVGKNGEVAAAIIEKENPCVHAIVLLEGTPVTRDYRIDRVRVWVNKKGRVIRVPRIG 202
            P KSSWP LVG  G VA AIIE++NP V A++L EGTPVT+D+R +RVR+WVNK+G V+  PRIG
Sbjct:    4 PGKSSWPHLVGVGGSVAKAIIERQNPNVKAVILEEGTPVTKDFRCNRVRIWVNKRGLVVSPPRIG 68          
BLAST of CX305835 vs. ExPASy Swiss-Prot
Match: BGIA_MOMCH (Glu S.griseus protease inhibitor OS=Momordica charantia PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.770e-15
Identity = 36/63 (57.14%), Postives = 46/63 (73.02%), Query Frame = 2
Query:   14 KSSWPELVGKNGEVAAAIIEKENPCVHAIVLLEGTPVTRDYRIDRVRVWVNKKGRVIRVPRIG 202
            K SWP+LVG  G  A A+IE+ENP V A+++  G+PVT D+R DRVRVWV ++G V R P IG
Sbjct:    6 KRSWPQLVGSTGAAAKAVIERENPRVRAVIVRVGSPVTADFRCDRVRVWVTERGIVARPPAIG 68          
BLAST of CX305835 vs. ExPASy Swiss-Prot
Match: ICI_LINUS (Proteinase inhibitor OS=Linum usitatissimum PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.871e-14
Identity = 39/66 (59.09%), Postives = 49/66 (74.24%), Query Frame = 2
Query:    2 RGPRKSSWPELVGKNGEVAAAIIEKENPCVHAIVLLEGTPVTRDYRIDRVRVWVNKKGRVIRVPRI 199
            R P K++WPELVGK+G +AAA +E+EN  VHAIVL EG+ +T+D+R DRV V VN  G V  VP I
Sbjct:    3 RCPGKNAWPELVGKSGNMAAATVERENRNVHAIVLKEGSAMTKDFRCDRVWVIVNDHGVVTSVPHI 68          
BLAST of CX305835 vs. ExPASy Swiss-Prot
Match: HPI_HEVBR (Protease inhibitor HPI OS=Hevea brasiliensis GN=PI1 PE=1 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 2.069e-13
Identity = 36/65 (55.38%), Postives = 48/65 (73.85%), Query Frame = 2
Query:    8 PRKSSWPELVGKNGEVAAAIIEKENPCVHAIVLLEGTPVTRDYRIDRVRVWVNKKGRVIRVPRIG 202
            P K+SWPELVG NG++AA II+ EN  V AIV+ EG P+T+D   +RVRV+V++   V +VP IG
Sbjct:    6 PVKNSWPELVGTNGDIAAGIIQTENANVKAIVVKEGLPITQDLNFNRVRVFVDENRVVTQVPAIG 70          
BLAST of CX305835 vs. ExPASy Swiss-Prot
Match: ICI1_SOLPE (Wound-induced proteinase inhibitor 1 OS=Solanum peruvianum PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.135e-11
Identity = 33/63 (52.38%), Postives = 45/63 (71.43%), Query Frame = 2
Query:   14 KSSWPELVGKNGEVAAAIIEKENPCVHAI-VLLEGTPVTRDYRIDRVRVWVNKKGRVIRVPRI 199
            K  WPEL+G     A  IIEKENP +  I +LL G+PVT+D+R DRVR++VN  G V+++PR+
Sbjct:   48 KQFWPELIGVPALYAKGIIEKENPSITNIPILLNGSPVTKDFRCDRVRLFVNILGDVVQIPRV 110          
BLAST of CX305835 vs. ExPASy Swiss-Prot
Match: ATSI_AMACA (Trypsin/subtilisin inhibitor OS=Amaranthus caudatus PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.135e-11
Identity = 35/64 (54.69%), Postives = 44/64 (68.75%), Query Frame = 2
Query:    8 PRKSSWPELVGKNGEVAAAIIEKENPCVHAIVLLEGTPVTRDYRIDRVRVWVNKKGRVIRVPRI 199
            P K  WPELVG+ G  AAAIIE+ENP V +IV  E +  T+D+R DRV V V+  G V+R PR+
Sbjct:    5 PGKQEWPELVGEYGYKAAAIIERENPNVRSIVKHERSGFTKDFRCDRVWVVVDSTGVVVRTPRV 68          
BLAST of CX305835 vs. ExPASy Swiss-Prot
Match: ICI2_HORVU (Subtilisin-chymotrypsin inhibitor-2A OS=Hordeum vulgare PE=1 SV=2)

HSP 1 Score: 65.4698 bits (158), Expect = 9.610e-11
Identity = 32/63 (50.79%), Postives = 44/63 (69.84%), Query Frame = 2
Query:   14 KSSWPELVGKNGEVAAAIIEKENPCVHAIVLLEGTPVTRDYRIDRVRVWVNKKGRVIRVPRIG 202
            K+ WPELVGK+ E A  +I ++ P    IVL  GT VT +YRIDRVR++V+K   + +VPR+G
Sbjct:   22 KTEWPELVGKSVEEAKKVILQDKPEAQIIVLPVGTIVTMEYRIDRVRLFVDKLDNIAQVPRVG 84          
The following BLAST results are available for this feature:
BLAST of CX305835 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
ITH5_CUCMA5.621e-1964.62Inhibitor of trypsin and hageman factor OS=Cucurbi... [more]
BGIA_MOMCH3.770e-1557.14Glu S.griseus protease inhibitor OS=Momordica char... [more]
ICI_LINUS1.871e-1459.09Proteinase inhibitor OS=Linum usitatissimum PE=1 S... [more]
HPI_HEVBR2.069e-1355.38Protease inhibitor HPI OS=Hevea brasiliensis GN=PI... [more]
ICI1_SOLPE1.135e-1152.38Wound-induced proteinase inhibitor 1 OS=Solanum pe... [more]
ATSI_AMACA1.135e-1154.69Trypsin/subtilisin inhibitor OS=Amaranthus caudatu... [more]
ICI2_HORVU9.610e-1150.79Subtilisin-chymotrypsin inhibitor-2A OS=Hordeum vu... [more]
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Properties
Property NameValue
Genbank descriptionC18010H01Rv Drought1 Citrus clementina cDNA clone C18010H01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX305835 ID=CX305835; Name=CX305835; organism=Citrus clementina; type=EST; length=321bp
GCGGGGTCCACGCAAGAGCTCATGGCCAGAGCTGGTTGGTAAAAACGGGG
AGGTTGCTGCTGCTATTATAGAGAAAGAGAATCCTTGTGTTCATGCAATC
GTATTACTTGAGGGAACTCCAGTTACTCGGGACTATAGGATTGACAGGGT
TCGTGTTTGGGTCAACAAGAAAGGGAGGGTGATTAGGGTTCCTCGTATTG
GTTGAATTTCCTCCATCGACTATCTCATAACTAATAAATAAATAAATGAA
ATAAGTGTTGTTGTAGGCTATGAGATAATGCATGCTTGGACTAATTTGCT
CCTCAAAAAAAAAAAAAAAAA
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