CX305842

Overview
NameCX305842
Unique NameCX305842
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length370
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig860 contig Ccv1_Contig860:188..557. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX305842 vs. ExPASy Swiss-Prot
Match: ASP_THECC (21 kDa seed protein OS=Theobroma cacao GN=ASP PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.629e-16
Identity = 41/95 (43.16%), Postives = 61/95 (64.21%), Query Frame = 1
Query:   70 CPLDVIQLPSDMQNGIELTLSPYNNST-IVRESTDLNLRFSVLLSGRD-YCNEQPLWKVDNYDAASGKWFITTGGLDGHPGAETLLNWFKLEKIG 348
            CP  V+Q  SD+ NG  +  S  ++   +VR STD+N+ F  +   RD  C+   +W++DNYD ++GKW++TT G+ G PG  TL +WFK+EK G
Sbjct:   69 CPEIVVQRRSDLDNGTPVIFSNADSKDDVVRVSTDVNIEFVPI---RDRLCSTSTVWRLDNYDNSAGKWWVTTDGVKGEPGPNTLCSWFKIEKAG 160          
BLAST of CX305842 vs. ExPASy Swiss-Prot
Match: MIRA_RICDU (Miraculin OS=Richadella dulcifica PE=1 SV=3)

HSP 1 Score: 75.485 bits (184), Expect = 9.350e-14
Identity = 38/101 (37.62%), Postives = 59/101 (58.42%), Query Frame = 1
Query:   70 CPLDVIQLPSDMQNGIELTLSPYN-NSTIVRESTDLNLRFSVLLSGRDYCNEQPLWKVDNYDAASGKWFITTGGLDGHPGAETLLNWFKLEKIGNFPGIYK 369
            CP  V+Q   ++ +   L   P N    +VR STDLN+ FS  +  R       +W++D YD ++G++F+T GG+ G+PG ET+ +WFK+E+     G YK
Sbjct:   76 CPPRVVQTRKEVDHDRPLAFFPENPKEDVVRVSTDLNINFSAFMPCR--WTSSTVWRLDKYDESTGQYFVTIGGVKGNPGPETISSWFKIEEFCG-SGFYK 173          
BLAST of CX305842 vs. ExPASy Swiss-Prot
Match: LSPI_CARPA (Latex serine proteinase inhibitor OS=Carica papaya PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.546e-11
Identity = 46/126 (36.51%), Postives = 63/126 (50.00%), Query Frame = 1
Query:    1 YIVSAIWXXXXXXXXXXXXXXXY-CPLDVIQLPSDMQNGIELTLSPYNN--STIVRESTDLNLRFSVLLSGRDYCNEQPLWKVDNYDAASGKWFITTGGLDGHPGAETLLNWFKLEKIGNFPGIYK 369
            ++VSAIW                 CPL V+Q P D  NG  +  S   N    IV ES DLN++F++ ++    CNE   WKVD +    G W +T GG  G+ G E+  + FK++K G  P  YK
Sbjct:   21 FVVSAIWGAGGGGLTVYGPGNKKKCPLSVVQDPFD--NGEPIIFSAIKNVKDNIVFESVDLNVKFNITIN----CNETTAWKVDRFPGVIG-WTVTLGGEKGYHGFESTHSMFKIKKAG-LPFSYK 138          
The following BLAST results are available for this feature:
BLAST of CX305842 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
ASP_THECC2.629e-1643.1621 kDa seed protein OS=Theobroma cacao GN=ASP PE=2... [more]
MIRA_RICDU9.350e-1437.62Miraculin OS=Richadella dulcifica PE=1 SV=3[more]
LSPI_CARPA2.546e-1136.51Latex serine proteinase inhibitor OS=Carica papaya... [more]
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Properties
Property NameValue
Genbank descriptionC18010H08Rv Drought1 Citrus clementina cDNA clone C18010H08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX305842 ID=CX305842; Name=CX305842; organism=Citrus clementina; type=EST; length=370bp
TACATAGTCTCAGCCATCTGGGGAGCTGGCGGTGGTGGAGTTAGCCTACA
CGGTGGCAGAAACGGATATTGTCCGCTGGACGTTATCCAGTTACCTTCTG
ATATGCAAAATGGAATCGAATTAACACTGTCACCGTATAACAATTCTACA
ATTGTCCGAGAATCCACTGATCTCAACTTGAGATTCTCAGTGTTGCTATC
TGGACGTGACTATTGTAACGAACAACCGTTGTGGAAAGTTGATAATTATG
ACGCGGCATCAGGCAAATGGTTTATAACAACCGGGGGACTTGATGGTCAC
CCTGGAGCTGAAACTTTGCTAAATTGGTTTAAGCTTGAGAAAATTGGAAA
TTTTCCAGGTATATACAAAA
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