CX306013

Overview
NameCX306013
Unique NameCX306013
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length416
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig872 contig Ccv1_Contig872:1..416. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX306013 vs. ExPASy Swiss-Prot
Match: HSP17_ARATH (17.4 kDa class I heat shock protein OS=Arabidopsis thaliana GN=HSP17.4A PE=1 SV=2)

HSP 1 Score: 165.236 bits (417), Expect = 9.044e-41
Identity = 77/113 (68.14%), Postives = 90/113 (79.65%), Query Frame = 2
Query:   77 MSLIPSIFGGRRTNVFDPVSLDVWDPFDGFLSSALTNAPSSARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKF 415
            MSL+PS FGGRRTNVFDP SLDVWDPF+GFL+  LTNAP  A++ + F NA++DW+ETP+AHVFKAD+PGL+          G ILQISGERS E EEK+D WHRVERSSGKF
Sbjct:    1 MSLVPSFFGGRRTNVFDPFSLDVWDPFEGFLTPGLTNAP--AKDVAAFTNAKVDWRETPEAHVFKADVPGLKKEEVKVEVEDGNILQISGERSSENEEKSDTWHRVERSSGKF 111          
BLAST of CX306013 vs. ExPASy Swiss-Prot
Match: HS181_ARATH (18.1 kDa class I heat shock protein OS=Arabidopsis thaliana GN=HSP18.1 PE=2 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 2.015e-40
Identity = 81/115 (70.43%), Postives = 92/115 (80.00%), Query Frame = 2
Query:   77 MSLIPSIFGGRRTNVFDPVSLDVWDPFDGFL--SSALTNAPSSARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKF 415
            MSLIPSIFGGRR+NVFDP S D+WDPF+GF   SSAL NA S+AR+ + F NAR+DWKETP+AHVFKADLPGL+            +LQISGERSKE EEKNDKWHRVER+SGKF
Sbjct:    1 MSLIPSIFGGRRSNVFDPFSQDLWDPFEGFFTPSSALANA-STARDVAAFTNARVDWKETPEAHVFKADLPGLKKEEVKVEVEDKNVLQISGERSKENEEKNDKWHRVERASGKF 114          
BLAST of CX306013 vs. ExPASy Swiss-Prot
Match: HS17C_ARATH (17.6 kDa class I heat shock protein 3 OS=Arabidopsis thaliana GN=HSP17.6C PE=2 SV=2)

HSP 1 Score: 164.081 bits (414), Expect = 2.015e-40
Identity = 82/114 (71.93%), Postives = 91/114 (79.82%), Query Frame = 2
Query:   77 MSLIPSIFGGRRTNVFDPVSLDVWDPFDGFLS-SALTNAPSSARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKF 415
            MSLIPSIFGGRRTNVFDP SLDV+DPF+GFL+ S L NAP  A + + F NA++DW+ETP+AHVFKADLPGLR          G ILQISGERS E EEKNDKWHRVERSSGKF
Sbjct:    1 MSLIPSIFGGRRTNVFDPFSLDVFDPFEGFLTPSGLANAP--AMDVAAFTNAKVDWRETPEAHVFKADLPGLRKEEVKVEVEDGNILQISGERSNENEEKNDKWHRVERSSGKF 112          
BLAST of CX306013 vs. ExPASy Swiss-Prot
Match: HSP11_DAUCA (17.8 kDa class I heat shock protein OS=Daucus carota PE=3 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 3.217e-38
Identity = 75/113 (66.37%), Postives = 86/113 (76.11%), Query Frame = 2
Query:   77 MSLIPSIFGGRRTNVFDPVSLDVWDPFDGFLSSALTNAPSSARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKF 415
            MS+IPS FGGRR+NVFDP SLDVWDPF  F     ++A    +ET+ F N  IDWKETPQAHVFKADLPGL+          G++LQISGER+KE+EEKNDKWHRVERSSGKF
Sbjct:    1 MSIIPSFFGGRRSNVFDPFSLDVWDPFKDF-PLVTSSASEFGKETAAFVNTHIDWKETPQAHVFKADLPGLKKEEVKVELEEGKVLQISGERNKEKEEKNDKWHRVERSSGKF 112          
BLAST of CX306013 vs. ExPASy Swiss-Prot
Match: HSP12_MEDSA (18.2 kDa class I heat shock protein OS=Medicago sativa GN=HSP18.2 PE=2 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 3.932e-36
Identity = 71/113 (62.83%), Postives = 84/113 (74.34%), Query Frame = 2
Query:   77 MSLIPSIFGGRRTNVFDPVSLDVWDPFDGFLSSALTNAPSSARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKF 415
            MSLIPS FGGRR+NVFDP SLDVWDPF  F  +    + S  RE S F + R+DWKETP+AHVFKADLPG++           R+LQISGERS E+E+KND+WHR+ERSSGKF
Sbjct:    1 MSLIPSFFGGRRSNVFDPFSLDVWDPFKDFPFNNSALSASFPRENSAFVSTRVDWKETPEAHVFKADLPGMKKEEVKVEIEDDRVLQISGERSVEKEDKNDQWHRLERSSGKF 113          
BLAST of CX306013 vs. ExPASy Swiss-Prot
Match: HSP16_SOYBN (18.5 kDa class I heat shock protein OS=Glycine max GN=HSP18.5-C PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 2.549e-35
Identity = 73/118 (61.86%), Postives = 86/118 (72.88%), Query Frame = 2
Query:   77 MSLIPSIFGGRRTNVFDPVSLDVWDPFDGF-----LSSALTNAPSSARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKF 415
            MSLIP+ FGGRR NVFDP SLDVWDPF  F     LSSA  + P  +RE S F + R+DWKETP+AHVFKAD+PGL+           ++LQISGER+ E+E+KND WHRVERSSGKF
Sbjct:    1 MSLIPNFFGGRRNNVFDPFSLDVWDPFKDFPFPNTLSSA--SFPEFSRENSAFVSTRVDWKETPEAHVFKADIPGLKKEEVKVQIEDDKVLQISGERNVEKEDKNDTWHRVERSSGKF 116          
BLAST of CX306013 vs. ExPASy Swiss-Prot
Match: HSP11_PEA (18.1 kDa class I heat shock protein OS=Pisum sativum GN=HSP18.1 PE=2 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 2.549e-35
Identity = 71/113 (62.83%), Postives = 82/113 (72.57%), Query Frame = 2
Query:   77 MSLIPSIFGGRRTNVFDPVSLDVWDPFDGFLSSALTNAPSSARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKF 415
            MSLIPS F GRR+NVFDP SLDVWDP   F  S  + + S  RE   F + R+DWKETP+AHVFKADLPGL+           R+LQISGERS E+E+KND+WHRVERSSGKF
Sbjct:    1 MSLIPSFFSGRRSNVFDPFSLDVWDPLKDFPFSNSSPSASFPRENPAFVSTRVDWKETPEAHVFKADLPGLKKEEVKVEVEDDRVLQISGERSVEKEDKNDEWHRVERSSGKF 113          
BLAST of CX306013 vs. ExPASy Swiss-Prot
Match: HSP11_HELAN (17.6 kDa class I heat shock protein OS=Helianthus annuus GN=HSP17.6 PE=2 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 5.678e-35
Identity = 69/113 (61.06%), Postives = 82/113 (72.57%), Query Frame = 2
Query:   77 MSLIPSIFGGRRTNVFDPVSLDVWDPFDGFLSSALTNAPSSARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKF 415
            MS+IPS F  +R+N+FDP SLD WDPF G +S+        ARET+   NARIDWKETP+AHV KADLPG++          GR+LQISGER +EQEEK+D WHRVERSSGKF
Sbjct:    1 MSIIPSFFTSKRSNIFDPFSLDTWDPFQGIIST------EPARETAAIVNARIDWKETPEAHVLKADLPGMKKEEVKVEVEDGRVLQISGERCREQEEKDDTWHRVERSSGKF 107          
BLAST of CX306013 vs. ExPASy Swiss-Prot
Match: HSP12_DAUCA (18.0 kDa class I heat shock protein OS=Daucus carota PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 9.686e-35
Identity = 69/114 (60.53%), Postives = 85/114 (74.56%), Query Frame = 2
Query:   77 MSLIPSIFGGRRTNVFDPVSLDVWDPFDGF-LSSALTNAPSSARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKF 415
            MS+IPS FG RR+NV +P SLD+WDPF  + L ++   +    +ET+ FAN  IDWKETPQAHVFKADLPGL+          G++LQISGER+KE+EEKN+KWHRVE SSGKF
Sbjct:    1 MSIIPSFFGSRRSNVLNPFSLDIWDPFQDYPLITSSGTSSEFGKETAAFANTHIDWKETPQAHVFKADLPGLKKEEVKVEVEEGKVLQISGERNKEKEEKNNKWHRVEFSSGKF 114          
BLAST of CX306013 vs. ExPASy Swiss-Prot
Match: HSP13_SOYBN (17.5 kDa class I heat shock protein OS=Glycine max GN=HSP17.5-M PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 2.158e-34
Identity = 71/114 (62.28%), Postives = 84/114 (73.68%), Query Frame = 2
Query:   77 MSLIPSIFGGRRTNVFDPVSLDVWDPFDGFLSSALTNAPSS-ARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKF 415
            MSLIPSIFGGRR+NVFDP SLDVWDPF  F      + P+S + E S F N R+DWKETP+AHVF+AD+PGL+           R+LQISGER+ E+E+KND WHRVERSSG F
Sbjct:    1 MSLIPSIFGGRRSNVFDPFSLDVWDPFKDF------HFPTSLSAENSAFVNTRVDWKETPEAHVFEADIPGLKKEEVKVQIEDDRVLQISGERNLEKEDKNDTWHRVERSSGNF 108          
The following BLAST results are available for this feature:
BLAST of CX306013 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
HSP17_ARATH9.044e-4168.1417.4 kDa class I heat shock protein OS=Arabidopsis... [more]
HS181_ARATH2.015e-4070.4318.1 kDa class I heat shock protein OS=Arabidopsis... [more]
HS17C_ARATH2.015e-4071.9317.6 kDa class I heat shock protein 3 OS=Arabidops... [more]
HSP11_DAUCA3.217e-3866.3717.8 kDa class I heat shock protein OS=Daucus caro... [more]
HSP12_MEDSA3.932e-3662.8318.2 kDa class I heat shock protein OS=Medicago sa... [more]
HSP16_SOYBN2.549e-3561.8618.5 kDa class I heat shock protein OS=Glycine max... [more]
HSP11_PEA2.549e-3562.8318.1 kDa class I heat shock protein OS=Pisum sativ... [more]
HSP11_HELAN5.678e-3561.0617.6 kDa class I heat shock protein OS=Helianthus ... [more]
HSP12_DAUCA9.686e-3560.5318.0 kDa class I heat shock protein OS=Daucus caro... [more]
HSP13_SOYBN2.158e-3462.2817.5 kDa class I heat shock protein OS=Glycine max... [more]

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Properties
Property NameValue
Genbank descriptionC18013A01Rv Drought1 Citrus clementina cDNA clone C18013A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX306013 ID=CX306013; Name=CX306013; organism=Citrus clementina; type=EST; length=416bp
GCGGGGATCTTCAAATTGATTGATCAAAGCATTTCCGAAGTTGTTGAGCA
TTTAATTAGCGTCCCAGTTTGCCATAATGTCACTCATTCCAAGCATCTTC
GGTGGCCGAAGAACCAACGTGTTCGATCCAGTTTCATTAGATGTATGGGA
TCCTTTCGACGGGTTCTTGTCCTCTGCCCTTACCAACGCGCCGTCTTCGG
CTAGGGAAACATCCCAATTCGCCAATGCAAGAATTGACTGGAAAGAGACT
CCTCAGGCTCACGTATTCAAAGCTGATCTTCCAGGGCTGAGGAAAGAAGA
AGTAAAAGTTGAGGTTGAAGAGGGCAGGATTCTGCAGATAAGCGGAGAGA
GGAGCAAGGAGCAGGAAGAGAAGAATGACAAGTGGCATCGCGTCGAGAGG
AGCAGTGGCAAGTTCC
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