CX306030

Overview
NameCX306030
Unique NameCX306030
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length523
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX306030 vs. ExPASy Swiss-Prot
Match: GSTX1_TOBAC (Probable glutathione S-transferase OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 3.805e-13
Identity = 37/88 (42.05%), Postives = 53/88 (60.23%), Query Frame = -2
Query:  259 LKGKRFFGGEKIGLADLALGWLANLIGVFEEVIGVKLIEKERFPLLSAWMQEFAEAPVIKESWPPHEKLVTKFRAIREPYVAAAAQPK 522
            LK K+FF G+K G AD+A   +A  +GVFEE  GV L+  E+FP    W  E+     IKES PP ++L+  +R+  +   A+A+ PK
Sbjct:  136 LKDKKFFVGDKFGFADIAANLVAFWLGVFEEASGVVLVTSEKFPNFCKWRGEYINCSQIKESLPPRDELLAFYRSRCQAAAASASAPK 223          
BLAST of CX306030 vs. ExPASy Swiss-Prot
Match: GSTX6_SOYBN (Probable glutathione S-transferase OS=Glycine max GN=HSP26-A PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 4.970e-13
Identity = 35/83 (42.17%), Postives = 51/83 (61.45%), Query Frame = -2
Query:  274 LKGKRFFGGEKIGLADLALGWLANLIGVFEEVIGVKLIEKERFPLLSAWMQEFAEAPVIKESWPPHEKLVTKFRAIREPYVAA 522
            LK K+FFGGE+ GL D+A  ++A  I +F+E+ G++L   E+FP+L  W QEF   P + E  PP + L   F+A  E   A+
Sbjct:  142 LKDKKFFGGEEFGLVDIAAVFIAFWIPIFQEIAGLQLFTSEKFPILYKWSQEFLNHPFVHEVLPPRDPLFAYFKARYESLSAS 224          
BLAST of CX306030 vs. ExPASy Swiss-Prot
Match: GSTX2_TOBAC (Probable glutathione S-transferase OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 4.970e-13
Identity = 36/88 (40.91%), Postives = 52/88 (59.09%), Query Frame = -2
Query:  259 LKGKRFFGGEKIGLADLALGWLANLIGVFEEVIGVKLIEKERFPLLSAWMQEFAEAPVIKESWPPHEKLVTKFRAIREPYVAAAAQPK 522
            LK K+FF G+K G AD+A   +   +GVFEE  G  L++ E+FP  S W  E+     + ES PP ++L+  FRA  +  VA+ + PK
Sbjct:  136 LKDKKFFAGDKFGFADIAANLVGFWLGVFEEGYGDVLVKSEKFPNFSKWRDEYINCSQVNESLPPRDELLAFFRARFQAVVASRSAPK 223          
BLAST of CX306030 vs. ExPASy Swiss-Prot
Match: GSTX3_TOBAC (Probable glutathione S-transferase OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 6.491e-13
Identity = 37/88 (42.05%), Postives = 52/88 (59.09%), Query Frame = -2
Query:  259 LKGKRFFGGEKIGLADLALGWLANLIGVFEEVIGVKLIEKERFPLLSAWMQEFAEAPVIKESWPPHEKLVTKFRAIREPYVAAAAQPK 522
            LK K+FF G+K G AD+A   +   +GVFEE  GV L+  E+FP  S W  E+     +KES P  ++L+  FRA  +  VA+ + PK
Sbjct:  136 LKDKKFFVGDKFGFADIAANLVGFWLGVFEEGYGVVLVTSEKFPNFSRWRDEYINCSQVKESLPSRDELLAFFRARFQAVVASISAPK 223          
The following BLAST results are available for this feature:
BLAST of CX306030 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
GSTX1_TOBAC3.805e-1342.05Probable glutathione S-transferase OS=Nicotiana ta... [more]
GSTX6_SOYBN4.970e-1342.17Probable glutathione S-transferase OS=Glycine max ... [more]
GSTX2_TOBAC4.970e-1340.91Probable glutathione S-transferase OS=Nicotiana ta... [more]
GSTX3_TOBAC6.491e-1342.05Probable glutathione S-transferase OS=Nicotiana ta... [more]
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Properties
Property NameValue
Genbank descriptionC18013B07Rv Drought1 Citrus clementina cDNA clone C18013B07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX306030 ID=CX306030; Name=CX306030; organism=Citrus clementina; type=EST; length=523bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTGGGAAAAGGGCAAAAGGCAAATT
TTATTCCAATCTTTAGCGAATGAGAAACAGAACATTCATGAAGCTAACAC
AATTACATTCCTTATCAAATTCCAGCAATTAAGCTCCGTTATTTGCATAA
AAACATACACAGCTAACATCTACAACCAGACAACCTTGTTGGTTTAGCCT
CTTGCAGTCGAAACAAGAGCGCAAGGCTCAAAATCCCCCACACATACTAA
ATTTGTCATTTAGGCTGGGCAGCAGCTGCAACATAAGGCTCTCGGATGGC
ACGAAATTTGGTGACTAGTTTTTCATGAGGTGGCCAGCTTTCTTTGATTA
CAGGGGCCTCAGCAAACTCTTGCATCCAAGCTGACAGCAGTGGAAACCGC
TCCTTTTCTATCAGTTTCACACCAATTACCTCTTCAAATACGCCGATCAA
ATTAGCAAGCCAGCCCAATGCAAGATCTGCCAATCCAATCTTCTCTCCAC
CAAAAAATCTCTTTCCCTTCAGC
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