CX306031

Overview
NameCX306031
Unique NameCX306031
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length432
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX306031_ssr82 microsatellite CX306031_ssr82:82..93. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig9835 contig Ccv1_Contig9835:193..621. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX306031 vs. ExPASy Swiss-Prot
Match: PR4A_TOBAC (Pathogenesis-related protein PR-4A OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 7.164e-39
Identity = 71/93 (76.34%), Postives = 78/93 (83.87%), Query Frame = -1
Query:  154 ATWDANKPLAWRQKYGWTAFCHSGGPIGQAACGRCLRVTNSGTGAQQIVRIVDQCANGGLDLSQGVFKKLDTNGIGYHQGFLTVSYEFVNSND 432
            ATWDA+KPLAWRQKYGWTAFC   GP GQ +CGRCLRVTN+GTG Q  VRIVDQC+NGGLDL   VF +LDTNG+GY QG LTV+YEFVN ND
Sbjct:   55 ATWDADKPLAWRQKYGWTAFCGPAGPRGQDSCGRCLRVTNTGTGTQTTVRIVDQCSNGGLDLDVNVFNQLDTNGVGYQQGHLTVNYEFVNCND 147          
BLAST of CX306031 vs. ExPASy Swiss-Prot
Match: PR4B_TOBAC (Pathogenesis-related protein PR-4B OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 4.644e-38
Identity = 70/93 (75.27%), Postives = 77/93 (82.80%), Query Frame = -1
Query:  154 ATWDANKPLAWRQKYGWTAFCHSGGPIGQAACGRCLRVTNSGTGAQQIVRIVDQCANGGLDLSQGVFKKLDTNGIGYHQGFLTVSYEFVNSND 432
            ATWDA+KPLAWRQKYGWTAFC   GP GQ +CGRCLRVTN+GTG Q  VRIVDQC+NGGLDL   VF +LDTNG+GY QG L V+YEFVN ND
Sbjct:   55 ATWDADKPLAWRQKYGWTAFCGPAGPRGQDSCGRCLRVTNTGTGTQATVRIVDQCSNGGLDLDVNVFNQLDTNGLGYQQGHLIVNYEFVNCND 147          
BLAST of CX306031 vs. ExPASy Swiss-Prot
Match: PRP2_SOLLC (Pathogenesis-related protein P2 OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 5.677e-36
Identity = 65/90 (72.22%), Postives = 75/90 (83.33%), Query Frame = -1
Query:  163 ATWDANKPLAWRQKYGWTAFCHSGGPIGQAACGRCLRVTNSGTGAQQIVRIVDQCANGGLDLSQGVFKKLDTNGIGYHQGFLTVSYEFVN 432
            ATWDA+KPL WR++YGWTAFC   GP GQA+CGRCLRVTN+GTG Q+ VRIVDQC NGGLDL   VF +LDTNG+GY +G L V+YEFVN
Sbjct:   53 ATWDADKPLEWRRRYGWTAFCGPAGPTGQASCGRCLRVTNTGTGTQETVRIVDQCRNGGLDLDVNVFNRLDTNGLGYQRGNLNVNYEFVN 142          
BLAST of CX306031 vs. ExPASy Swiss-Prot
Match: BARW_HORVU (Barwin OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 1.826e-34
Identity = 67/94 (71.28%), Postives = 74/94 (78.72%), Query Frame = -1
Query:  154 ATWDANKPLAWRQKYGWTAFCHSGGPIGQAACGRCLRVTNSGTGAQQIVRIVDQCANGGLDLS-QGVFKKLDTNGIGYHQGFLTVSYEFVNSND 432
            ATWDA+KPL+WR KYGWTAFC   GP GQAACG+CLRVTN  TGAQ   RIVDQCANGGLDL    VF K+DTNGIGY QG L V+Y+FV+  D
Sbjct:   32 ATWDASKPLSWRSKYGWTAFCGPAGPRGQAACGKCLRVTNPATGAQITARIVDQCANGGLDLDWDTVFTKIDTNGIGYQQGHLNVNYQFVDCRD 125          
BLAST of CX306031 vs. ExPASy Swiss-Prot
Match: WHW2_WHEAT (Wheatwin-2 OS=Triticum aestivum GN=PR4B PE=1 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 1.546e-33
Identity = 66/94 (70.21%), Postives = 73/94 (77.66%), Query Frame = -1
Query:  154 ATWDANKPLAWRQKYGWTAFCHSGGPIGQAACGRCLRVTNSGTGAQQIVRIVDQCANGGLDLS-QGVFKKLDTNGIGYHQGFLTVSYEFVNSND 432
            ATWDA+KPL+WR KYGWTAFC   G  GQAACG+CLRVTN  TGAQ   RIVDQCANGGLDL    VF K+DTNGIGY QG L V+Y+FV+  D
Sbjct:   55 ATWDASKPLSWRSKYGWTAFCGPAGAHGQAACGKCLRVTNPATGAQITARIVDQCANGGLDLDWDTVFTKIDTNGIGYQQGHLNVNYQFVDCRD 148          
BLAST of CX306031 vs. ExPASy Swiss-Prot
Match: WIN1_SOLTU (Wound-induced protein WIN1 OS=Solanum tuberosum GN=WIN1 PE=2 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 5.874e-33
Identity = 61/93 (65.59%), Postives = 76/93 (81.72%), Query Frame = -1
Query:  154 ATWDANKPLAWRQKYGWTAFCHSGGPIGQAACGRCLRVTNSGTGAQQIVRIVDQCANGGLDLSQGVFKKLDTNGIGYHQGFLTVSYEFVNSND 432
            +TWDANKPL+WR+KYGWTAFC   GP G+ +CG+CLRVTN+ TGAQ  VRIVDQC+NGGLDL   VF+++DT+G G HQG L V+Y+FV+  D
Sbjct:  107 STWDANKPLSWRKKYGWTAFCGPVGPRGRDSCGKCLRVTNTRTGAQTTVRIVDQCSNGGLDLDVNVFRQIDTDGNGNHQGHLIVNYQFVDCGD 199          
BLAST of CX306031 vs. ExPASy Swiss-Prot
Match: WIN2_SOLTU (Wound-induced protein WIN2 OS=Solanum tuberosum GN=WIN2 PE=2 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 1.002e-32
Identity = 61/93 (65.59%), Postives = 74/93 (79.57%), Query Frame = -1
Query:  154 ATWDANKPLAWRQKYGWTAFCHSGGPIGQAACGRCLRVTNSGTGAQQIVRIVDQCANGGLDLSQGVFKKLDTNGIGYHQGFLTVSYEFVNSND 432
            +TWDANKP AWR KYGWTAFC   GP G+ +CG+CLRVTN+ TGAQ  VRIVDQC+NGGLDL   VF+++DT+G+G  QG L V+Y+FVN  D
Sbjct:  106 STWDANKPYAWRSKYGWTAFCGPVGPRGRDSCGKCLRVTNTRTGAQTTVRIVDQCSNGGLDLDINVFQQIDTDGVGNQQGHLIVNYQFVNCGD 198          
BLAST of CX306031 vs. ExPASy Swiss-Prot
Match: WHW1_WHEAT (Wheatwin-1 OS=Triticum aestivum GN=PR4A PE=1 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 1.002e-32
Identity = 64/94 (68.09%), Postives = 73/94 (77.66%), Query Frame = -1
Query:  154 ATWDANKPLAWRQKYGWTAFCHSGGPIGQAACGRCLRVTNSGTGAQQIVRIVDQCANGGLDLS-QGVFKKLDTNGIGYHQGFLTVSYEFVNSND 432
            ATWDA+KPL+WR KYGWTAFC   G  GQA+CG+CL+VTN  TGAQ   RIVDQCANGGLDL    VF K+DTNGIGY QG L V+Y+FV+  D
Sbjct:   53 ATWDASKPLSWRSKYGWTAFCGPAGAHGQASCGKCLQVTNPATGAQITARIVDQCANGGLDLDWDTVFTKIDTNGIGYQQGHLNVNYQFVDCRD 146          
BLAST of CX306031 vs. ExPASy Swiss-Prot
Match: HEVE_HEVBR (Pro-hevein OS=Hevea brasiliensis GN=HEV1 PE=1 SV=2)

HSP 1 Score: 137.117 bits (344), Expect = 2.915e-32
Identity = 59/93 (63.44%), Postives = 75/93 (80.65%), Query Frame = -1
Query:  154 ATWDANKPLAWRQKYGWTAFCHSGGPIGQAACGRCLRVTNSGTGAQQIVRIVDQCANGGLDLSQGVFKKLDTNGIGYHQGFLTVSYEFVNSND 432
            +TWDANKP +WR KYGWTAFC   G  GQ++CG+CL VTN+GTGA+  VRIVDQC+NGGLDL   VF++LDT+G GY +G +TV+Y+FV+  D
Sbjct:   97 STWDANKPYSWRSKYGWTAFCGPVGAHGQSSCGKCLSVTNTGTGAKTTVRIVDQCSNGGLDLDVNVFRQLDTDGKGYERGHITVNYQFVDCGD 189          
BLAST of CX306031 vs. ExPASy Swiss-Prot
Match: PR4_PRUPE (Pathogenesis-related protein PR-4 (Fragment) OS=Prunus persica PE=2 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 4.973e-32
Identity = 61/93 (65.59%), Postives = 73/93 (78.49%), Query Frame = -1
Query:  154 ATWDANKPLAWRQKYGWTAFCHSGGPIGQAACGRCLRVTNSGTGAQQIVRIVDQCANGGLDLSQGVFKKLDTNGIGYHQGFLTVSYEFVNSND 432
            ATWDA+KPL+WR KYGWTAFC   GP GQ +CG+CL VTN+GTGA+  VRIVDQC+NGGLDL   VF ++DTNG G  QG L V+Y+FV+  D
Sbjct:   15 ATWDADKPLSWRSKYGWTAFCGPVGPTGQDSCGKCLLVTNTGTGAKVTVRIVDQCSNGGLDLDVNVFNQIDTNGQGNAQGHLIVNYDFVDCGD 107          
The following BLAST results are available for this feature:
BLAST of CX306031 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
PR4A_TOBAC7.164e-3976.34Pathogenesis-related protein PR-4A OS=Nicotiana ta... [more]
PR4B_TOBAC4.644e-3875.27Pathogenesis-related protein PR-4B OS=Nicotiana ta... [more]
PRP2_SOLLC5.677e-3672.22Pathogenesis-related protein P2 OS=Solanum lycoper... [more]
BARW_HORVU1.826e-3471.28Barwin OS=Hordeum vulgare PE=1 SV=1[more]
WHW2_WHEAT1.546e-3370.21Wheatwin-2 OS=Triticum aestivum GN=PR4B PE=1 SV=1[more]
WIN1_SOLTU5.874e-3365.59Wound-induced protein WIN1 OS=Solanum tuberosum GN... [more]
WIN2_SOLTU1.002e-3265.59Wound-induced protein WIN2 OS=Solanum tuberosum GN... [more]
WHW1_WHEAT1.002e-3268.09Wheatwin-1 OS=Triticum aestivum GN=PR4A PE=1 SV=1[more]
HEVE_HEVBR2.915e-3263.44Pro-hevein OS=Hevea brasiliensis GN=HEV1 PE=1 SV=2[more]
PR4_PRUPE4.973e-3265.59Pathogenesis-related protein PR-4 (Fragment) OS=Pr... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC18013B08Rv Drought1 Citrus clementina cDNA clone C18013B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX306031 ID=CX306031; Name=CX306031; organism=Citrus clementina; type=EST; length=432bp
CGAACTTCATTGATTACACAGACGTGGATGATACTTTATCAGAAGTTTAA
ATTTTATGTATTGACTAATTATATAGAGGGATAATTAATTAATAAATTAA
CCCTATTACAGCGTTAAGCTTCCATCGATCATGGAATTATAGATGGAGCT
TTAATCATTGGAGTTTACAAACTCGTAGCTGACAGTGAGGAAGCCTTGAT
GATAGCCTATTCCATTGGTGTCCAATTTCTTGAACACTCCTTGCGACAAA
TCTAAGCCTCCATTGGCACACTGATCAACAATTCTCACAATTTGTTGGGC
TCCTGTACCACTGTTTGTGACCCTTAAGCACCTGCCACAAGCAGCTTGTC
CAATGGGTCCGCCCGAATGACAGAAAGCAGTCCAGCCATATTTCTGGCGC
CAGGCCAAGGGCTTGTTGGCATCCCATGTTGC
back to top