CX306043

Overview
NameCX306043
Unique NameCX306043
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length302
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9835 contig Ccv1_Contig9835:1..297. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX306043 vs. ExPASy Swiss-Prot
Match: PR4B_TOBAC (Pathogenesis-related protein PR-4B OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 1.118e-22
Identity = 43/56 (76.79%), Postives = 47/56 (83.93%), Query Frame = 3
Query:  135 TYHLYHPEQIGWDLTAASAFCATWDANKPLAWRQKYGWTAFCHSGGPIGQAACGTC 302
            TYHLY+P+ I WDL AASAFCATWDA+KPLAWRQKYGWTAFC   GP GQ +CG C
Sbjct:   34 TYHLYNPQNINWDLRAASAFCATWDADKPLAWRQKYGWTAFCGPAGPRGQDSCGRC 89          
BLAST of CX306043 vs. ExPASy Swiss-Prot
Match: PR4A_TOBAC (Pathogenesis-related protein PR-4A OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 1.118e-22
Identity = 43/56 (76.79%), Postives = 47/56 (83.93%), Query Frame = 3
Query:  135 TYHLYHPEQIGWDLTAASAFCATWDANKPLAWRQKYGWTAFCHSGGPIGQAACGTC 302
            TYHLY+P+ I WDL AASAFCATWDA+KPLAWRQKYGWTAFC   GP GQ +CG C
Sbjct:   34 TYHLYNPQNINWDLRAASAFCATWDADKPLAWRQKYGWTAFCGPAGPRGQDSCGRC 89          
BLAST of CX306043 vs. ExPASy Swiss-Prot
Match: WIN1_SOLTU (Wound-induced protein WIN1 OS=Solanum tuberosum GN=WIN1 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 6.136e-21
Identity = 37/56 (66.07%), Postives = 47/56 (83.93%), Query Frame = 3
Query:  135 TYHLYHPEQIGWDLTAASAFCATWDANKPLAWRQKYGWTAFCHSGGPIGQAACGTC 302
            TYH+Y+P+ +GWDL A SA+C+TWDANKPL+WR+KYGWTAFC   GP G+ +CG C
Sbjct:   86 TYHIYNPQNVGWDLNAVSAYCSTWDANKPLSWRKKYGWTAFCGPVGPRGRDSCGKC 141          
BLAST of CX306043 vs. ExPASy Swiss-Prot
Match: PRP2_SOLLC (Pathogenesis-related protein P2 OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 6.136e-21
Identity = 38/56 (67.86%), Postives = 45/56 (80.36%), Query Frame = 3
Query:  135 TYHLYHPEQIGWDLTAASAFCATWDANKPLAWRQKYGWTAFCHSGGPIGQAACGTC 302
            TYHLY+P+ I WDL  AS +CATWDA+KPL WR++YGWTAFC   GP GQA+CG C
Sbjct:   32 TYHLYNPQNINWDLRTASVYCATWDADKPLEWRRRYGWTAFCGPAGPTGQASCGRC 87          
BLAST of CX306043 vs. ExPASy Swiss-Prot
Match: WIN2_SOLTU (Wound-induced protein WIN2 OS=Solanum tuberosum GN=WIN2 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.367e-20
Identity = 37/56 (66.07%), Postives = 45/56 (80.36%), Query Frame = 3
Query:  135 TYHLYHPEQIGWDLTAASAFCATWDANKPLAWRQKYGWTAFCHSGGPIGQAACGTC 302
            TYH+Y+P+ +GWDL A SA+C+TWDANKP AWR KYGWTAFC   GP G+ +CG C
Sbjct:   85 TYHIYNPQNVGWDLNAVSAYCSTWDANKPYAWRSKYGWTAFCGPVGPRGRDSCGKC 140          
BLAST of CX306043 vs. ExPASy Swiss-Prot
Match: HEVL_ARATH (Hevein-like protein OS=Arabidopsis thaliana GN=HEL PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 5.194e-20
Identity = 38/56 (67.86%), Postives = 43/56 (76.79%), Query Frame = 3
Query:  135 TYHLYHPEQIGWDLTAASAFCATWDANKPLAWRQKYGWTAFCHSGGPIGQAACGTC 302
            TYH Y+P Q  WDL A SA+C+TWDA+KP AWR KYGWTAFC   GP GQA+CG C
Sbjct:   80 TYHFYNPAQNNWDLRAVSAYCSTWDADKPYAWRSKYGWTAFCGPAGPRGQASCGKC 135          
BLAST of CX306043 vs. ExPASy Swiss-Prot
Match: HEVE_HEVBR (Pro-hevein OS=Hevea brasiliensis GN=HEV1 PE=1 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 3.367e-19
Identity = 37/56 (66.07%), Postives = 44/56 (78.57%), Query Frame = 3
Query:  135 TYHLYHPEQIGWDLTAASAFCATWDANKPLAWRQKYGWTAFCHSGGPIGQAACGTC 302
            TYHLY+ +  GWDL AASA+C+TWDANKP +WR KYGWTAFC   G  GQ++CG C
Sbjct:   76 TYHLYNSQDHGWDLNAASAYCSTWDANKPYSWRSKYGWTAFCGPVGAHGQSSCGKC 131          
BLAST of CX306043 vs. ExPASy Swiss-Prot
Match: BARW_HORVU (Barwin OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 3.367e-19
Identity = 40/58 (68.97%), Postives = 43/58 (74.14%), Query Frame = 3
Query:  135 TYHLYHPEQIGWDL--TAASAFCATWDANKPLAWRQKYGWTAFCHSGGPIGQAACGTC 302
            TYH Y P Q  WDL   A SA+CATWDA+KPL+WR KYGWTAFC   GP GQAACG C
Sbjct:    9 TYHYYRPAQNNWDLGAPAVSAYCATWDASKPLSWRSKYGWTAFCGPAGPRGQAACGKC 66          
BLAST of CX306043 vs. ExPASy Swiss-Prot
Match: WHW2_WHEAT (Wheatwin-2 OS=Triticum aestivum GN=PR4B PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.850e-18
Identity = 39/58 (67.24%), Postives = 42/58 (72.41%), Query Frame = 3
Query:  135 TYHLYHPEQIGWDL--TAASAFCATWDANKPLAWRQKYGWTAFCHSGGPIGQAACGTC 302
            TYH Y P Q  WDL   A SA+CATWDA+KPL+WR KYGWTAFC   G  GQAACG C
Sbjct:   32 TYHYYRPAQNNWDLGAPAVSAYCATWDASKPLSWRSKYGWTAFCGPAGAHGQAACGKC 89          
BLAST of CX306043 vs. ExPASy Swiss-Prot
Match: WHW1_WHEAT (Wheatwin-1 OS=Triticum aestivum GN=PR4A PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 6.349e-18
Identity = 38/58 (65.52%), Postives = 42/58 (72.41%), Query Frame = 3
Query:  135 TYHLYHPEQIGWDL--TAASAFCATWDANKPLAWRQKYGWTAFCHSGGPIGQAACGTC 302
            TYH Y P Q  WDL   A SA+CATWDA+KPL+WR KYGWTAFC   G  GQA+CG C
Sbjct:   30 TYHYYRPAQNNWDLGAPAVSAYCATWDASKPLSWRSKYGWTAFCGPAGAHGQASCGKC 87          
The following BLAST results are available for this feature:
BLAST of CX306043 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
PR4B_TOBAC1.118e-2276.79Pathogenesis-related protein PR-4B OS=Nicotiana ta... [more]
PR4A_TOBAC1.118e-2276.79Pathogenesis-related protein PR-4A OS=Nicotiana ta... [more]
WIN1_SOLTU6.136e-2166.07Wound-induced protein WIN1 OS=Solanum tuberosum GN... [more]
PRP2_SOLLC6.136e-2167.86Pathogenesis-related protein P2 OS=Solanum lycoper... [more]
WIN2_SOLTU1.367e-2066.07Wound-induced protein WIN2 OS=Solanum tuberosum GN... [more]
HEVL_ARATH5.194e-2067.86Hevein-like protein OS=Arabidopsis thaliana GN=HEL... [more]
HEVE_HEVBR3.367e-1966.07Pro-hevein OS=Hevea brasiliensis GN=HEV1 PE=1 SV=2[more]
BARW_HORVU3.367e-1968.97Barwin OS=Hordeum vulgare PE=1 SV=1[more]
WHW2_WHEAT2.850e-1867.24Wheatwin-2 OS=Triticum aestivum GN=PR4B PE=1 SV=1[more]
WHW1_WHEAT6.349e-1865.52Wheatwin-1 OS=Triticum aestivum GN=PR4A PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC18013C08Rv Drought1 Citrus clementina cDNA clone C18013C08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX306043 ID=CX306043; Name=CX306043; organism=Citrus clementina; type=EST; length=302bp
GCGGGGGTACAACGGATAAGTTAAGCTTACAACATTAAGACAAAAATATG
GGGAGGTTCGGTCTCTGTGTGATTCTGTCAGTTTGTCTACTGGTGGCAGC
TGCTTCTGCCCAAAGTGCTTCTAATGTGATAGCCACGTATCATCTCTACC
ACCCTGAGCAAATTGGATGGGACTTGACTGCAGCGAGCGCTTTCTGCGCA
ACATGGGATGCCAACAAGCCCTTGGCCTGGCGCCAGAAATATGGCTGGAC
TGCTTTCTGTCATTCGGGCGGACCCATTGGACAAGCTGCTTGTGGCACGT
GC
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