CX306044

Overview
NameCX306044
Unique NameCX306044
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length572
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1030 contig Ccv1_Contig1030:186..757. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX306044 vs. ExPASy Swiss-Prot
Match: ASP_THECC (21 kDa seed protein OS=Theobroma cacao GN=ASP PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 3.443e-24
Identity = 60/134 (44.78%), Postives = 83/134 (61.94%), Query Frame = 3
Query:   69 CPLDVTQLPSDTQNGIKLTLSPYNNST-IVRESTDLNLRFSVLLSGRD-YCNEQPLWKVDNYDAASGKWFITTGGLDGHPGAETLLNWFKLEKIGNFPGTYKIVHCPSVCESCVKLCNNVGR-SFEDGVRRLVL 461
            CP  V Q  SD  NG  +  S  ++   +VR STD+N+ F  +   RD  C+   +W++DNYD ++GKW++TT G+ G PG  TL +WFK+EK G     YK   CPSVC+SC  LC+++GR S +DG  RL L
Sbjct:   69 CPEIVVQRRSDLDNGTPVIFSNADSKDDVVRVSTDVNIEFVPI---RDRLCSTSTVWRLDNYDNSAGKWWVTTDGVKGEPGPNTLCSWFKIEKAGVL--GYKFRFCPSVCDSCTTLCSDIGRHSDDDGQIRLAL 197          
BLAST of CX306044 vs. ExPASy Swiss-Prot
Match: MIRA_RICDU (Miraculin OS=Richadella dulcifica PE=1 SV=3)

HSP 1 Score: 100.138 bits (248), Expect = 7.938e-21
Identity = 53/140 (37.86%), Postives = 78/140 (55.71%), Query Frame = 3
Query:   69 CPLDVTQLPSDTQNGIKLTLSPYN-NSTIVRESTDLNLRFSVLLSGRDYCNEQPLWKVDNYDAASGKWFITTGGLDGHPGAETLLNWFKLEKIGNFPGTYKIVHCPSVCESCVKLCNNVGRSFEDGVRRLVLVRDDEPAF 485
            CP  V Q   +  +   L   P N    +VR STDLN+ FS  +  R       +W++D YD ++G++F+T GG+ G+PG ET+ +WFK+E+     G YK+V CP+VC SC   C +VG   +   RR + + D   AF
Sbjct:   76 CPPRVVQTRKEVDHDRPLAFFPENPKEDVVRVSTDLNINFSAFMPCR--WTSSTVWRLDKYDESTGQYFVTIGGVKGNPGPETISSWFKIEEFCG-SGFYKLVFCPTVCGSCKVKCGDVGIYIDQKGRRRLALSDKPFAF 212          
BLAST of CX306044 vs. ExPASy Swiss-Prot
Match: LSPI_CARPA (Latex serine proteinase inhibitor OS=Carica papaya PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 5.887e-16
Identity = 54/137 (39.42%), Postives = 74/137 (54.01%), Query Frame = 3
Query:   69 CPLDVTQLPSDTQNGIKLTLSPYNN--STIVRESTDLNLRFSVLLSGRDYCNEQPLWKVDNYDAASGKWFITTGGLDGHPGAETLLNWFKLEKIGNFPGTYKIVHCPSVCESCVKLCNNVGRSFED-GVRRLVLVRD 470
            CPL V Q P D  NG  +  S   N    IV ES DLN++F++ ++    CNE   WKVD +    G W +T GG  G+ G E+  + FK++K G  P +YK   CPS   + +  CNNV   F+   +RRL+L  D
Sbjct:   45 CPLSVVQDPFD--NGEPIIFSAIKNVKDNIVFESVDLNVKFNITIN----CNETTAWKVDRFPGVIG-WTVTLGGEKGYHGFESTHSMFKIKKAG-LPFSYKFHFCPSYPRTRLIPCNNVDIFFDKYRIRRLILTND 173          
The following BLAST results are available for this feature:
BLAST of CX306044 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
ASP_THECC3.443e-2444.7821 kDa seed protein OS=Theobroma cacao GN=ASP PE=2... [more]
MIRA_RICDU7.938e-2137.86Miraculin OS=Richadella dulcifica PE=1 SV=3[more]
LSPI_CARPA5.887e-1639.42Latex serine proteinase inhibitor OS=Carica papaya... [more]
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Properties
Property NameValue
Genbank descriptionC18013C09Rv Drought1 Citrus clementina cDNA clone C18013C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX306044 ID=CX306044; Name=CX306044; organism=Citrus clementina; type=EST; length=572bp
ATATAGTCTCAGCCATCTGGGGAGCTGGCGGTGGTGGAGCTAGCCTACAC
GGTGGCAGAAACGGATATTGTCCGCTGGACGTTACCCAATTACCTTCTGA
TACGCAAAATGGAATCAAATTAACACTGTCACCGTATAACAATTCTACAA
TTGTCCGAGAATCCACTGATCTCAACTTGAGATTCTCAGTGTTGCTATCT
GGACGTGACTATTGTAACGAACAACCGTTGTGGAAAGTTGATAATTATGA
CGCGGCATCAGGCAAATGGTTTATAACAACCGGGGGACTTGATGGTCACC
CTGGAGCTGAAACTTTGCTAAATTGGTTTAAGCTTGAGAAAATTGGAAAT
TTTCCAGGTACATACAAAATCGTTCATTGTCCATCCGTTTGCGAGTCTTG
TGTCAAACTTTGCAACAACGTTGGCCGTTCGTTTGAGGATGGCGTTCGAC
GTCTGGTTCTGGTTCGTGATGATGAGCCGGCATTTCCTGTTGTGTTAATT
CCCGCTACAGAAAGATCAACGTCTGTGTAATCAATGTACCCTAACCAGCT
AGCGGTATTATTATTCTAAATA
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