CX306049

Overview
NameCX306049
Unique NameCX306049
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length519
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig6639 contig Ccv1_Contig6639:209..727. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX306049 vs. ExPASy Swiss-Prot
Match: SKP1B_ARATH (SKP1-like protein 1B OS=Arabidopsis thaliana GN=SKP1B PE=1 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 9.314e-41
Identity = 81/113 (71.68%), Postives = 91/113 (80.53%), Query Frame = -3
Query:  218 YCKKHVEAGSGDKKD-------------DKSTEDDLKTWDADFVKVDQNTLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFSPDEEEEVRRENQWAFE 517
            YCK+HVEA    +                 S+++DLKTWD++F+KVDQ TLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDF+P+EEEEVRRENQWAFE
Sbjct:   59 YCKRHVEAAEKSETTADAAAATTTTTVASGSSDEDLKTWDSEFIKVDQGTLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 171          
BLAST of CX306049 vs. ExPASy Swiss-Prot
Match: SKP1A_ARATH (SKP1-like protein 1A OS=Arabidopsis thaliana GN=SKP1A PE=1 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 6.037e-40
Identity = 78/103 (75.73%), Postives = 90/103 (87.38%), Query Frame = -3
Query:  218 YCKKHVEAGSGDKKDDK---STEDDLKTWDADFVKVDQNTLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFSPDEEEEVRRENQWAFE 517
            YCK+HVEA +   +  +   +++DDLK WDADF+K+DQ TLF+LILAANYLNIK LLDLTCQTVADMIKGKTPEEIR TFNIKNDF+P+EEEEVRRENQWAFE
Sbjct:   58 YCKRHVEAAASKAEAVEGAATSDDDLKAWDADFMKIDQATLFELILAANYLNIKNLLDLTCQTVADMIKGKTPEEIRTTFNIKNDFTPEEEEEVRRENQWAFE 160          
BLAST of CX306049 vs. ExPASy Swiss-Prot
Match: ASK4_ARATH (SKP1-like protein 4 OS=Arabidopsis thaliana GN=ASK4 PE=1 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 1.303e-34
Identity = 72/104 (69.23%), Postives = 85/104 (81.73%), Query Frame = -3
Query:  218 YCKKHVEAGS---GDKKDDKSTE-DDLKTWDADFVKVDQNTLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFSPDEEEEVRRENQWAFE 517
            YCKKHVEA +   GDK    S E D+LK WD++FVKVDQ TLFDLILAANYLNI GLLDLTC+ VAD ++GKTPE++R  FNIKND++P+EE EVR EN+WAFE
Sbjct:   60 YCKKHVEAAAEAGGDKDFYGSAENDELKNWDSEFVKVDQPTLFDLILAANYLNIGGLLDLTCKAVADQMRGKTPEQMRAHFNIKNDYTPEEEAEVRNENKWAFE 163          
BLAST of CX306049 vs. ExPASy Swiss-Prot
Match: ASK3_ARATH (SKP1-like protein 3 OS=Arabidopsis thaliana GN=ASK3 PE=1 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 1.440e-33
Identity = 70/104 (67.31%), Postives = 84/104 (80.77%), Query Frame = -3
Query:  218 YCKKHVEAGS---GDKKDDKSTED-DLKTWDADFVKVDQNTLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFSPDEEEEVRRENQWAFE 517
            YCKKHVEA +   GDK    STE+ +LKTWD DFVKVD  TLFDL+ AANYLNI GLLDLTC+ VAD ++GKTP ++R+ FNIKND++P+EE EVR EN+WAFE
Sbjct:   60 YCKKHVEAAAEAGGDKDFYGSTENHELKTWDNDFVKVDHPTLFDLLRAANYLNISGLLDLTCKAVADQMRGKTPAQMREHFNIKNDYTPEEEAEVRNENRWAFE 163          
BLAST of CX306049 vs. ExPASy Swiss-Prot
Match: ASK11_ARATH (SKP1-like protein 11 OS=Arabidopsis thaliana GN=ASK11 PE=1 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 4.191e-33
Identity = 67/100 (67.00%), Postives = 81/100 (81.00%), Query Frame = -3
Query:  218 YCKKHVEAGSGDKKDDKSTEDDLKTWDADFVKVDQNTLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFSPDEEEEVRRENQWAFE 517
            YCKKH        + +  +E+DL  WD  F+ ++Q+T+F+LILAANYLNIK LLDLTCQTVADMIKGKTPEEIR TFNI+NDF+P+EEE VR+ENQWAFE
Sbjct:   58 YCKKHHV-----DEANPISEEDLNNWDEKFMDLEQSTIFELILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRSTFNIENDFTPEEEEAVRKENQWAFE 152          
BLAST of CX306049 vs. ExPASy Swiss-Prot
Match: ASK12_ARATH (SKP1-like protein 12 OS=Arabidopsis thaliana GN=ASK12 PE=1 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 2.080e-32
Identity = 67/101 (66.34%), Postives = 81/101 (80.20%), Query Frame = -3
Query:  218 YCKK-HVEAGSGDKKDDKSTEDDLKTWDADFVKVDQNTLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFSPDEEEEVRRENQWAFE 517
            YCKK HV+  +        +E+DL  WD  F+ ++Q+T+F+LILAANYLNIK L DLTCQTVADMIKGKTPEEIR TFNI+NDF+P+EEE VR+ENQWAFE
Sbjct:   58 YCKKYHVDEAN------PISEEDLNKWDEKFMDLEQSTIFELILAANYLNIKSLFDLTCQTVADMIKGKTPEEIRSTFNIENDFTPEEEEAVRKENQWAFE 152          
BLAST of CX306049 vs. ExPASy Swiss-Prot
Match: SKP1B_DICDI (SCF ubiquitin ligase complex protein SKP1b OS=Dictyostelium discoideum GN=fpaB-1 PE=1 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 1.348e-31
Identity = 64/99 (64.65%), Postives = 81/99 (81.82%), Query Frame = -3
Query:  227 YCKKHVEAGS--GDKKDDKSTEDDLKTWDADFVKVDQNTLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFSPDEEEEVRRENQW 517
            YC+ H +  S  GD K D+   DD+  +D DF KVDQ TLF+LILAANYL+IK LLD+TC+TVA+MI+GKTPEEIRK FNIKNDF+P+EEE++R+EN+W
Sbjct:   57 YCRHHHQHPSPQGDDKKDEKRLDDIPPYDRDFCKVDQPTLFELILAANYLDIKPLLDVTCKTVANMIRGKTPEEIRKIFNIKNDFTPEEEEQIRKENEW 155          
BLAST of CX306049 vs. ExPASy Swiss-Prot
Match: SKP1A_DICDI (SCF ubiquitin ligase complex protein SKP1a OS=Dictyostelium discoideum GN=fpaA PE=1 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 1.348e-31
Identity = 64/99 (64.65%), Postives = 81/99 (81.82%), Query Frame = -3
Query:  227 YCKKHVEAGS--GDKKDDKSTEDDLKTWDADFVKVDQNTLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFSPDEEEEVRRENQW 517
            YC+ H +  S  GD K D+   DD+  +D DF KVDQ TLF+LILAANYL+IK LLD+TC+TVA+MI+GKTPEEIRK FNIKNDF+P+EEE++R+EN+W
Sbjct:   57 YCRHHHQHPSPQGDDKKDEKRLDDIPPYDRDFCKVDQPTLFELILAANYLDIKPLLDVTCKTVANMIRGKTPEEIRKIFNIKNDFTPEEEEQIRKENEW 155          
BLAST of CX306049 vs. ExPASy Swiss-Prot
Match: SKP1_XENLA (S-phase kinase-associated protein 1 OS=Xenopus laevis GN=skp1 PE=1 SV=3)

HSP 1 Score: 133.65 bits (335), Expect = 5.123e-31
Identity = 63/90 (70.00%), Postives = 78/90 (86.67%), Query Frame = -3
Query:  218 KDDKSTE---DDLKTWDADFVKVDQNTLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFSPDEEEEVRRENQWAFE 478
            +DD++ E   DD+  WD +F+KVDQ TLF+LILAANYL+IKGLLD+TC+TVA+MIKGKTPEEIRKTFNIKNDF+ +EE +VR+ENQW  E
Sbjct:   73 EDDENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWCEE 162          
BLAST of CX306049 vs. ExPASy Swiss-Prot
Match: SKP1_RAT (S-phase kinase-associated protein 1 OS=Rattus norvegicus GN=Skp1 PE=2 SV=3)

HSP 1 Score: 133.65 bits (335), Expect = 5.123e-31
Identity = 63/90 (70.00%), Postives = 78/90 (86.67%), Query Frame = -3
Query:  218 KDDKSTE---DDLKTWDADFVKVDQNTLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFSPDEEEEVRRENQWAFE 478
            +DD++ E   DD+  WD +F+KVDQ TLF+LILAANYL+IKGLLD+TC+TVA+MIKGKTPEEIRKTFNIKNDF+ +EE +VR+ENQW  E
Sbjct:   73 EDDENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWCEE 162          
The following BLAST results are available for this feature:
BLAST of CX306049 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
SKP1B_ARATH9.314e-4171.68SKP1-like protein 1B OS=Arabidopsis thaliana GN=SK... [more]
SKP1A_ARATH6.037e-4075.73SKP1-like protein 1A OS=Arabidopsis thaliana GN=SK... [more]
ASK4_ARATH1.303e-3469.23SKP1-like protein 4 OS=Arabidopsis thaliana GN=ASK... [more]
ASK3_ARATH1.440e-3367.31SKP1-like protein 3 OS=Arabidopsis thaliana GN=ASK... [more]
ASK11_ARATH4.191e-3367.00SKP1-like protein 11 OS=Arabidopsis thaliana GN=AS... [more]
ASK12_ARATH2.080e-3266.34SKP1-like protein 12 OS=Arabidopsis thaliana GN=AS... [more]
SKP1B_DICDI1.348e-3164.65SCF ubiquitin ligase complex protein SKP1b OS=Dict... [more]
SKP1A_DICDI1.348e-3164.65SCF ubiquitin ligase complex protein SKP1a OS=Dict... [more]
SKP1_XENLA5.123e-3170.00S-phase kinase-associated protein 1 OS=Xenopus lae... [more]
SKP1_RAT5.123e-3170.00S-phase kinase-associated protein 1 OS=Rattus norv... [more]

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Properties
Property NameValue
Genbank descriptionC18013D03Rv Drought1 Citrus clementina cDNA clone C18013D03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX306049 ID=CX306049; Name=CX306049; organism=Citrus clementina; type=EST; length=519bp
CGAGGAACTTTTTTTTTTTTTTTTTTTTTTTTTTTTATGCAATAGACAAG
GGTTCAATGACATTTATATCGAGCAGCATTCACAGGTTCACGACAAAAGG
AAATGTTGATGTTCAATACTAGACACCTACTGGCAACATACTAAAAGACC
ACTATCATTATAACGACATTCCTATCACAAATATTAATTACCGAGCCTTC
ATCACTTCAGTCCTTCACTCGAATGCCCATTGGTTCTCTCTCCGAACCTC
CTCTTCTTCATCGGGAGAGAAGTCATTCTTGATGTTGAAGGTCTTGCGGA
TCTCCTCTGGAGTCTTCCCCTTGATCATGTCTGCAACAGTTTGGCAGGTC
AAGTCCAGCAAACCCTTAATGTTCAGGTAATTGGCGGCCAAGATTAGGTC
AAAGAGGGTATTCTGATCAACCTTGACGAAGTCTGCATCCCAGGTCTTGA
GATCATCCTCGGTCGACTTGTCGTCCTTCTTGTCCCCTGACCCAGCCTCA
ACGTGCTTCTTGCAGTACT
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