CX306051

Overview
NameCX306051
Unique NameCX306051
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length453
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig696 contig Ccv1_Contig696:346..789. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX306051 vs. ExPASy Swiss-Prot
Match: ELI_PEA (Early light-induced protein, chloroplastic OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 5.956e-42
Identity = 85/107 (79.44%), Postives = 95/107 (88.79%), Query Frame = -2
Query:  132 VFAFSGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLSDGGVAWFLGTSVLLTVASLVPLFKGVSVESKSDGFMTSDAELWNGRFAMLGLVALAFTEFVKGGTLV 452
            + AFSGPAPERINGRLAMIGFVAA+GVEI+KGQ +  QLS GGVAWFLGTSVLL++ASL+P F+GVSVESKS   M+SDAE WNGR AMLGLVALAFTEFVKG +LV
Sbjct:   90 LMAFSGPAPERINGRLAMIGFVAAMGVEIAKGQGLSEQLSGGGVAWFLGTSVLLSLASLIPFFQGVSVESKSKSIMSSDAEFWNGRIAMLGLVALAFTEFVKGTSLV 196          
BLAST of CX306051 vs. ExPASy Swiss-Prot
Match: DS22_CRAPL (Desiccation stress protein DSP-22, chloroplastic OS=Craterostigma plantagineum GN=DSP-22 PE=2 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 5.769e-37
Identity = 70/107 (65.42%), Postives = 94/107 (87.85%), Query Frame = -2
Query:  132 VFAFSGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLSDGGVAWFLGTSVLLTVASLVPLFKGVSVESKSDGFMTSDAELWNGRFAMLGLVALAFTEFVKGGTLV 452
            +F+F G APERINGR AMIGFVAA+GVE++ G+DVF+Q+ +GGV WFL TS +L +A+L+P+++G+S E+K++GF  SDAE+WNGRFAM+GLVALAFTE+VKGG L+
Sbjct:   91 LFSFDGLAPERINGRSAMIGFVAAVGVELATGRDVFSQVFNGGVMWFLLTSAVLVLATLIPIYRGLSPEAKNNGFWNSDAEIWNGRFAMIGLVALAFTEYVKGGPLI 197          
BLAST of CX306051 vs. ExPASy Swiss-Prot
Match: ELI5_HORVU (High molecular mass early light-inducible protein HV58, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 1.245e-31
Identity = 69/107 (64.49%), Postives = 83/107 (77.57%), Query Frame = -2
Query:  132 AFSGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLS--DGGVAWFLGTSVLLTVASLVPLFKGVSVESKSDGFMTSDAELWNGRFAMLGLVALAFTEFVKGGTLV 446
            AFSGPAPERINGRLAM+GFVAAL VE ++G  +  Q+     G+AWFL T+ + +VASL+PL +G SVESKS G  ++DAELWNGRFAMLGLVALA TEF+ G   V
Sbjct:  123 AFSGPAPERINGRLAMVGFVAALSVEAARGGGLLDQVGMWSSGLAWFLATAGVFSVASLLPLLQGQSVESKSSGIWSADAELWNGRFAMLGLVALAATEFITGAPFV 229          
BLAST of CX306051 vs. ExPASy Swiss-Prot
Match: ELI9_HORVU (Low molecular mass early light-inducible protein HV90, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 9.864e-29
Identity = 63/106 (59.43%), Postives = 77/106 (72.64%), Query Frame = -2
Query:  132 AFSGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLSDG-GVAWFLGTSVLLTVASLVPLFKGVSVESKSDGFMTSDAELWNGRFAMLGLVALAFTEFVKGGTLV 446
            AFSGPAPERINGRLAM+GFV AL VE  +G  + +QL  G G AWF  T  +L++ASLVPL +G S E ++   M ++AELWNGRFAMLGLVALA TE + G   +
Sbjct:   65 AFSGPAPERINGRLAMVGFVTALAVEAGRGDGLLSQLGSGTGQAWFAYTVAVLSMASLVPLLQGESAEGRAGAIMNANAELWNGRFAMLGLVALAATEIITGAPFI 170          
BLAST of CX306051 vs. ExPASy Swiss-Prot
Match: ELI6_HORVU (Low molecular mass early light-inducible protein HV60, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 2.197e-28
Identity = 62/102 (60.78%), Postives = 76/102 (74.51%), Query Frame = -2
Query:  144 AFSGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLSDG-GVAWFLGTSVLLTVASLVPLFKGVSVESKSDGFMTSDAELWNGRFAMLGLVALAFTEFVKG 446
            AFSGPAPERINGRLAM+GFV AL VE  +G  + +QL  G G AWF  T  +L++ASLVPL +G S E ++   M ++AELWNGRFAM+GLVALA TE + G
Sbjct:   60 AFSGPAPERINGRLAMVGFVTALAVEAGRGDGLLSQLGSGTGQAWFAYTVAMLSMASLVPLLQGESAEGRAGAIMNANAELWNGRFAMIGLVALAATEIITG 161          
BLAST of CX306051 vs. ExPASy Swiss-Prot
Match: CBR_DUNBA (Carotene biosynthesis-related protein CBR, chloroplastic OS=Dunaliella bardawil GN=CBR PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 3.291e-16
Identity = 54/105 (51.43%), Postives = 64/105 (60.95%), Query Frame = -2
Query:  144 VFAFSGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLSDGGVAWFLGTSVLLTVASLVPLFKGVSVESKSD--GFMTSDAELWNGRFAMLGLVALAFTEFVKG 452
            V  FSG APE INGRLAM+GFVAALG E+S G+ V  QL D      L T VL + ASL+P F       K D  G  T DAE+ NGRFAM+G  A+   E ++G
Sbjct:   70 VMGFSG-APEIINGRLAMLGFVAALGAELSTGESVLTQLGDQPTLIAL-TFVLFSAASLIPAF----ARRKGDAMGPFTPDAEMTNGRFAMIGFAAMLVYEGIQG 168          
The following BLAST results are available for this feature:
BLAST of CX306051 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
ELI_PEA5.956e-4279.44Early light-induced protein, chloroplastic OS=Pisu... [more]
DS22_CRAPL5.769e-3765.42Desiccation stress protein DSP-22, chloroplastic O... [more]
ELI5_HORVU1.245e-3164.49High molecular mass early light-inducible protein ... [more]
ELI9_HORVU9.864e-2959.43Low molecular mass early light-inducible protein H... [more]
ELI6_HORVU2.197e-2860.78Low molecular mass early light-inducible protein H... [more]
CBR_DUNBA3.291e-1651.43Carotene biosynthesis-related protein CBR, chlorop... [more]
back to top
Properties
Property NameValue
Genbank descriptionC18013D05Rv Drought1 Citrus clementina cDNA clone C18013D05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX306051 ID=CX306051; Name=CX306051; organism=Citrus clementina; type=EST; length=453bp
TTTTTTTTTTTTTTTTTTTTTGGGTGAATTACAGAATGGCATGAGAAATA
GAGATTTAATTACAGTAGGATCTCATACATTAATTAGTTAAAAAAAGTAC
AGATCTACAGATCTAAACAAAATTAAGCTTAAACAAGGGTGCCACCCTTA
ACAAACTCGGTGAAAGCCAAAGCAACAAGGCCCAGCATAGCAAACCTCCC
ATTCCACAACTCAGCATCCGAAGTCATGAACCCATCCGATTTAGACTCCA
CGCTGACACCTTTAAACAAAGGAACCAGGGACGCAACCGTGAGCAAAACA
CTGGTCCCCAAGAACCAGGCAACCCCACCGTCTGATAACTGGGCAAACAC
ATCCTGACCCTTGGATATCTCCACCCCCAATGCAGCCACGAACCCAATCA
TCGCAAGCCTCCCGTTTATCCTCTCCGGTGCCGGCCCGCTGAACGCGAAC
ACC
back to top