CX306056

Overview
NameCX306056
Unique NameCX306056
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length428
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig696 contig Ccv1_Contig696:348..775. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX306056 vs. ExPASy Swiss-Prot
Match: ELI_PEA (Early light-induced protein, chloroplastic OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 6.568e-42
Identity = 85/105 (80.95%), Postives = 94/105 (89.52%), Query Frame = -3
Query:  109 AFSGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLSDGGVAWFLGTSVLLTVASLVPLFKGVSVESKSDGFMTSDAELWNGRFAMLGLVALAFTEFVKGGTLV 423
            AFSGPAPERINGRLAMIGFVAA+GVEI+KGQ +  QLS GGVAWFLGTSVLL++ASL+P F+GVSVESKS   M+SDAE WNGR AMLGLVALAFTEFVKG +LV
Sbjct:   92 AFSGPAPERINGRLAMIGFVAAMGVEIAKGQGLSEQLSGGGVAWFLGTSVLLSLASLIPFFQGVSVESKSKSIMSSDAEFWNGRIAMLGLVALAFTEFVKGTSLV 196          
BLAST of CX306056 vs. ExPASy Swiss-Prot
Match: DS22_CRAPL (Desiccation stress protein DSP-22, chloroplastic OS=Craterostigma plantagineum GN=DSP-22 PE=2 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 6.362e-37
Identity = 70/106 (66.04%), Postives = 93/106 (87.74%), Query Frame = -3
Query:  109 FAFSGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLSDGGVAWFLGTSVLLTVASLVPLFKGVSVESKSDGFMTSDAELWNGRFAMLGLVALAFTEFVKGGTLV 426
            F+F G APERINGR AMIGFVAA+GVE++ G+DVF+Q+ +GGV WFL TS +L +A+L+P+++G+S E+K++GF  SDAE+WNGRFAM+GLVALAFTE+VKGG L+
Sbjct:   92 FSFDGLAPERINGRSAMIGFVAAVGVELATGRDVFSQVFNGGVMWFLLTSAVLVLATLIPIYRGLSPEAKNNGFWNSDAEIWNGRFAMIGLVALAFTEYVKGGPLI 197          
BLAST of CX306056 vs. ExPASy Swiss-Prot
Match: ELI5_HORVU (High molecular mass early light-inducible protein HV58, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 1.051e-31
Identity = 69/107 (64.49%), Postives = 83/107 (77.57%), Query Frame = -3
Query:  109 AFSGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLS--DGGVAWFLGTSVLLTVASLVPLFKGVSVESKSDGFMTSDAELWNGRFAMLGLVALAFTEFVKGGTLV 423
            AFSGPAPERINGRLAM+GFVAAL VE ++G  +  Q+     G+AWFL T+ + +VASL+PL +G SVESKS G  ++DAELWNGRFAMLGLVALA TEF+ G   V
Sbjct:  123 AFSGPAPERINGRLAMVGFVAALSVEAARGGGLLDQVGMWSSGLAWFLATAGVFSVASLLPLLQGQSVESKSSGIWSADAELWNGRFAMLGLVALAATEFITGAPFV 229          
BLAST of CX306056 vs. ExPASy Swiss-Prot
Match: ELI9_HORVU (Low molecular mass early light-inducible protein HV90, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 8.328e-29
Identity = 63/106 (59.43%), Postives = 77/106 (72.64%), Query Frame = -3
Query:  109 AFSGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLSDG-GVAWFLGTSVLLTVASLVPLFKGVSVESKSDGFMTSDAELWNGRFAMLGLVALAFTEFVKGGTLV 423
            AFSGPAPERINGRLAM+GFV AL VE  +G  + +QL  G G AWF  T  +L++ASLVPL +G S E ++   M ++AELWNGRFAMLGLVALA TE + G   +
Sbjct:   65 AFSGPAPERINGRLAMVGFVTALAVEAGRGDGLLSQLGSGTGQAWFAYTVAVLSMASLVPLLQGESAEGRAGAIMNANAELWNGRFAMLGLVALAATEIITGAPFI 170          
BLAST of CX306056 vs. ExPASy Swiss-Prot
Match: ELI6_HORVU (Low molecular mass early light-inducible protein HV60, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 1.855e-28
Identity = 62/102 (60.78%), Postives = 76/102 (74.51%), Query Frame = -3
Query:  121 AFSGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLSDG-GVAWFLGTSVLLTVASLVPLFKGVSVESKSDGFMTSDAELWNGRFAMLGLVALAFTEFVKG 423
            AFSGPAPERINGRLAM+GFV AL VE  +G  + +QL  G G AWF  T  +L++ASLVPL +G S E ++   M ++AELWNGRFAM+GLVALA TE + G
Sbjct:   60 AFSGPAPERINGRLAMVGFVTALAVEAGRGDGLLSQLGSGTGQAWFAYTVAMLSMASLVPLLQGESAEGRAGAIMNANAELWNGRFAMIGLVALAATEIITG 161          
BLAST of CX306056 vs. ExPASy Swiss-Prot
Match: CBR_DUNBA (Carotene biosynthesis-related protein CBR, chloroplastic OS=Dunaliella bardawil GN=CBR PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 8.085e-16
Identity = 53/102 (51.96%), Postives = 63/102 (61.76%), Query Frame = -3
Query:  121 FSGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLSDGGVAWFLGTSVLLTVASLVPLFKGVSVESKSD--GFMTSDAELWNGRFAMLGLVALAFTEFVKG 420
            FSG APE INGRLAM+GFVAALG E+S G+ V  QL D      L T VL + ASL+P F       K D  G  T DAE+ NGRFAM+G  A+   E ++G
Sbjct:   73 FSG-APEIINGRLAMLGFVAALGAELSTGESVLTQLGDQPTLIAL-TFVLFSAASLIPAF----ARRKGDAMGPFTPDAEMTNGRFAMIGFAAMLVYEGIQG 168          
The following BLAST results are available for this feature:
BLAST of CX306056 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
ELI_PEA6.568e-4280.95Early light-induced protein, chloroplastic OS=Pisu... [more]
DS22_CRAPL6.362e-3766.04Desiccation stress protein DSP-22, chloroplastic O... [more]
ELI5_HORVU1.051e-3164.49High molecular mass early light-inducible protein ... [more]
ELI9_HORVU8.328e-2959.43Low molecular mass early light-inducible protein H... [more]
ELI6_HORVU1.855e-2860.78Low molecular mass early light-inducible protein H... [more]
CBR_DUNBA8.085e-1651.96Carotene biosynthesis-related protein CBR, chlorop... [more]
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Properties
Property NameValue
Genbank descriptionC18013D10Rv Drought1 Citrus clementina cDNA clone C18013D10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX306056 ID=CX306056; Name=CX306056; organism=Citrus clementina; type=EST; length=428bp
TTTTTTTTTTTTTTTTTTTTTTTTTGCGAGATTTAATTACAGTAGGATCT
CATACATTAATTAGTTAAAAAAAATACAGATCTACAGATCTAAACAAAAT
TAAGCTTAAACAAGGGTGCCACCCTTAACAAACTCGGTGAAAGCCAAAGC
AACAAGGCCCAGCATAGCAAACCTCCCATTCCACAACTCAGCATCCGAAG
TCATGAACCCATCCGATTTAGACTCCACGCTGACACCTTTAAACAAAGGA
ACCAGGGACGCAACCGTGAGCAAAACACTGGTCCCCAAGAACCAGGCAAC
CCCACCGTCTGATAACTGGGCAAACACATCCTGACCCTTGGATATCTCCA
CCCCCAATGCAGCCACGAACCCAATCATCGCAAGCCTCCCGTTTATCCTC
TCCGGTGCCGGCCCGCTGAACGCGAACA
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