CX306095

Overview
NameCX306095
Unique NameCX306095
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length375
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig875 contig Ccv1_Contig875:1..375. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX306095 vs. ExPASy Swiss-Prot
Match: CTPA_SYNP2 (Carboxyl-terminal-processing protease OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=ctpA PE=3 SV=2)

HSP 1 Score: 122.865 bits (307), Expect = 5.088e-28
Identity = 66/114 (57.89%), Postives = 86/114 (75.44%), Query Frame = 3
Query:    6 GLDVAQIWLDGDETLVNAVDREGHTLPINMVDGHAITHDPLVVLVNEGSASASEILAGALHDNGRAILVGHKTFGKGKIQSVTESHDGSALFVTVAKYLSPALHDIDQVGITPD 347
            G+++A++WLD  ET+V  V+R+G     + V G  +T  PLVVLVN+ +ASASEILAGAL DNGRA+LVG KTFGKG IQS+ E  DG+ + VTVAKY +P  HDI+++GI PD
Sbjct:  262 GIEIARLWLD-QETIVYTVNRQGIFESYSAV-GQPLTDAPLVVLVNQATASASEILAGALQDNGRAMLVGEKTFGKGLIQSLFELPDGAGMAVTVAKYETPLHHDINKLGIMPD 373          
BLAST of CX306095 vs. ExPASy Swiss-Prot
Match: CTPA_SYNY3 (Carboxyl-terminal-processing protease OS=Synechocystis sp. (strain PCC 6803) GN=ctpA PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 2.525e-27
Identity = 66/114 (57.89%), Postives = 83/114 (72.81%), Query Frame = 3
Query:    6 GLDVAQIWLDGDETLVNAVDREGHTLPINMVDGHAITHDPLVVLVNEGSASASEILAGALHDNGRAILVGHKTFGKGKIQSVTESHDGSALFVTVAKYLSPALHDIDQVGITPD 347
            G+D+A++WL  + T+V  V+R+G T      +G A T  PLVVLVN+G+ASASEILAGAL DN RA LVG KTFGKG IQS+ E  DG+ + VTVAKY +P  HDI ++GI PD
Sbjct:  265 GIDIARLWLP-ESTIVYTVNRQG-TQESFTANGEAATDRPLVVLVNQGTASASEILAGALQDNQRATLVGEKTFGKGLIQSLFELSDGAGIAVTVAKYETPQHHDIHKLGIMPD 376          
BLAST of CX306095 vs. ExPASy Swiss-Prot
Match: CTPA_BARBK (Carboxy-terminal-processing protease OS=Bartonella bacilliformis (strain ATCC 35685 / KC583) GN=ctpA PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.896e-15
Identity = 41/114 (35.96%), Postives = 67/114 (58.77%), Query Frame = 3
Query:    9 LDVAQIWLDGDETLVNAVDREGHTLPINMVDGHAITHDPLVVLVNEGSASASEILAGALHDNGRAILVGHKTFGKGKIQSVTESHDGSALFVTVAKYLSPALHDIDQVGITPDV 350
            + V   +L+  E +     ++   +  +   G      P++VL+N GSASASEI+AGAL D+ RA ++G ++FGKG +Q++    +  AL +T A Y +P+   I  +GITPD+
Sbjct:  245 ISVTDAFLNKGEIVSTRGRKQNDVMRFDAKLGDLTDEKPIIVLINGGSASASEIVAGALQDHRRATIIGTQSFGKGSVQTIIPLGENGALRLTTALYYTPSGTSIQGIGITPDI 358          
BLAST of CX306095 vs. ExPASy Swiss-Prot
Match: CTPAL_STAHJ (Probable ctpA-like serine protease OS=Staphylococcus haemolyticus (strain JCSC1435) GN=SH1486 PE=3 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 2.451e-14
Identity = 47/114 (41.23%), Postives = 65/114 (57.02%), Query Frame = 3
Query:   15 VAQIWLDGDETLVNAVDREGHTLPINMVDGHAITHDPLV-VLVNEGSASASEILAGALHDNGRAILVGHKTFGKGKIQSVTESHDGSALFVTVAKYLSPALHDIDQVGITPDVQ 353
            +A I++D D+T+V     +         D      D  V +LVNEGSASASE+  GA+ D+ +A + G KTFGKG +Q+  E  DGS L  T  K+L+P  H+I   GI PD +
Sbjct:  281 MANIFIDKDQTVVKLEKGDDTESIKTSNDASNEAKDMKVSILVNEGSASASEVFTGAMRDHKKAKVYGSKTFGKGIVQTTREFKDGSLLKYTQMKWLTPDGHNIHGKGIQPDTK 394          
BLAST of CX306095 vs. ExPASy Swiss-Prot
Match: CTPAL_STAS1 (Probable ctpA-like serine protease OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=SSP1319 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.461e-14
Identity = 49/114 (42.98%), Postives = 68/114 (59.65%), Query Frame = 3
Query:   15 VAQIWLDGDETLVNAVDREGHTLPI---NMVDGHAITHDPLVVLVNEGSASASEILAGALHDNGRAILVGHKTFGKGKIQSVTESHDGSALFVTVAKYLSPALHDIDQVGITPD 347
            +A I++D +ET+V  +++  H   I   N     A   D + +LVN+GSASASE+  GA+ D  +A + G KTFGKG +Q+  E  DGS L  T  K+L+P  H I   GITPD
Sbjct:  276 MANIFIDKNETVVQ-LEKGKHKEAIKASNDASKEAKDMD-VSILVNKGSASASEVFTGAMKDYNKAKVYGSKTFGKGIVQTTREFEDGSLLKFTNMKWLTPKSHYIHGKGITPD 387          
BLAST of CX306095 vs. ExPASy Swiss-Prot
Match: CTPAL_STAAW (Probable ctpA-like serine protease OS=Staphylococcus aureus (strain MW2) GN=MW1310 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.315e-14
Identity = 41/77 (53.25%), Postives = 49/77 (63.64%), Query Frame = 3
Query:  132 VLVNEGSASASEILAGALHDNGRAILVGHKTFGKGKIQSVTESHDGSALFVTVAKYLSPALHDIDQVGITPDVQCTT 362
            +LVNEGSASASE+  GAL D  +A + G KTFGKG +Q+  E  DGS L  T  K+L+P  H I   GI PDV   T
Sbjct:  321 ILVNEGSASASEVFTGALKDYNKAKVYGSKTFGKGVVQTTREFKDGSLLKYTEMKWLTPDGHYIHGKGIKPDVTIDT 397          
BLAST of CX306095 vs. ExPASy Swiss-Prot
Match: CTPAL_STAAS (Probable ctpA-like serine protease OS=Staphylococcus aureus (strain MSSA476) GN=SAS1363 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.315e-14
Identity = 41/77 (53.25%), Postives = 49/77 (63.64%), Query Frame = 3
Query:  132 VLVNEGSASASEILAGALHDNGRAILVGHKTFGKGKIQSVTESHDGSALFVTVAKYLSPALHDIDQVGITPDVQCTT 362
            +LVNEGSASASE+  GAL D  +A + G KTFGKG +Q+  E  DGS L  T  K+L+P  H I   GI PDV   T
Sbjct:  321 ILVNEGSASASEVFTGALKDYNKAKVYGSKTFGKGVVQTTREFKDGSLLKYTEMKWLTPDGHYIHGKGIKPDVTIDT 397          
BLAST of CX306095 vs. ExPASy Swiss-Prot
Match: CTPAL_STAAR (Probable ctpA-like serine protease OS=Staphylococcus aureus (strain MRSA252) GN=SAR1432 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.315e-14
Identity = 41/77 (53.25%), Postives = 49/77 (63.64%), Query Frame = 3
Query:  132 VLVNEGSASASEILAGALHDNGRAILVGHKTFGKGKIQSVTESHDGSALFVTVAKYLSPALHDIDQVGITPDVQCTT 362
            +LVNEGSASASE+  GAL D  +A + G KTFGKG +Q+  E  DGS L  T  K+L+P  H I   GI PDV   T
Sbjct:  321 ILVNEGSASASEVFTGALKDYNKAKVYGSKTFGKGVVQTTREFKDGSLLKYTEMKWLTPDGHYIHGKGIKPDVTIDT 397          
BLAST of CX306095 vs. ExPASy Swiss-Prot
Match: CTPAL_STAAN (Probable ctpA-like serine protease OS=Staphylococcus aureus (strain N315) GN=SA1253 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.315e-14
Identity = 41/77 (53.25%), Postives = 49/77 (63.64%), Query Frame = 3
Query:  132 VLVNEGSASASEILAGALHDNGRAILVGHKTFGKGKIQSVTESHDGSALFVTVAKYLSPALHDIDQVGITPDVQCTT 362
            +LVNEGSASASE+  GAL D  +A + G KTFGKG +Q+  E  DGS L  T  K+L+P  H I   GI PDV   T
Sbjct:  321 ILVNEGSASASEVFTGALKDYNKAKVYGSKTFGKGVVQTTREFKDGSLLKYTEMKWLTPDGHYIHGKGIKPDVTIDT 397          
BLAST of CX306095 vs. ExPASy Swiss-Prot
Match: CTPAL_STAAM (Probable ctpA-like serine protease OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=SAV1420 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.315e-14
Identity = 41/77 (53.25%), Postives = 49/77 (63.64%), Query Frame = 3
Query:  132 VLVNEGSASASEILAGALHDNGRAILVGHKTFGKGKIQSVTESHDGSALFVTVAKYLSPALHDIDQVGITPDVQCTT 362
            +LVNEGSASASE+  GAL D  +A + G KTFGKG +Q+  E  DGS L  T  K+L+P  H I   GI PDV   T
Sbjct:  321 ILVNEGSASASEVFTGALKDYNKAKVYGSKTFGKGVVQTTREFKDGSLLKYTEMKWLTPDGHYIHGKGIKPDVTIDT 397          
The following BLAST results are available for this feature:
BLAST of CX306095 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
CTPA_SYNP25.088e-2857.89Carboxyl-terminal-processing protease OS=Synechoco... [more]
CTPA_SYNY32.525e-2757.89Carboxyl-terminal-processing protease OS=Synechocy... [more]
CTPA_BARBK2.896e-1535.96Carboxy-terminal-processing protease OS=Bartonella... [more]
CTPAL_STAHJ2.451e-1441.23Probable ctpA-like serine protease OS=Staphylococc... [more]
CTPAL_STAS15.461e-1442.98Probable ctpA-like serine protease OS=Staphylococc... [more]
CTPAL_STAAW9.315e-1453.25Probable ctpA-like serine protease OS=Staphylococc... [more]
CTPAL_STAAS9.315e-1453.25Probable ctpA-like serine protease OS=Staphylococc... [more]
CTPAL_STAAR9.315e-1453.25Probable ctpA-like serine protease OS=Staphylococc... [more]
CTPAL_STAAN9.315e-1453.25Probable ctpA-like serine protease OS=Staphylococc... [more]
CTPAL_STAAM9.315e-1453.25Probable ctpA-like serine protease OS=Staphylococc... [more]

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Properties
Property NameValue
Genbank descriptionC18013H07Rv Drought1 Citrus clementina cDNA clone C18013H07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX306095 ID=CX306095; Name=CX306095; organism=Citrus clementina; type=EST; length=375bp
GCGGGGGACTTGATGTTGCCCAAATATGGCTAGATGGAGACGAGACTCTT
GTGAACGCAGTTGACAGGGAAGGACATACGTTACCTATTAACATGGTCGA
TGGGCATGCCATAACTCATGATCCACTGGTGGTCCTTGTCAATGAGGGAA
GTGCGAGTGCGAGTGAGATTTTAGCGGGGGCATTGCATGATAATGGTCGT
GCCATCCTTGTGGGGCACAAAACCTTTGGCAAAGGCAAAATTCAGAGTGT
CACAGAGTCGCACGATGGATCAGCTCTGTTTGTCACGGTGGCAAAGTATC
TATCACCTGCACTTCACGACATAGATCAGGTTGGCATAACGCCTGATGTG
CAGTGCACAACAGACATGCTGAGCT
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