CX306101

Overview
NameCX306101
Unique NameCX306101
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length492
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX306101 vs. ExPASy Swiss-Prot
Match: RL34_PEA (60S ribosomal protein L34 OS=Pisum sativum GN=RPL34 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.445e-21
Identity = 43/47 (91.49%), Postives = 43/47 (91.49%), Query Frame = -3
Query:  314 KGIQGIPHLRPAEYKRSRLSRNHRTVNRTYGGVLSGGAVRERIIRAF 454
            K IQGIPHLRP EYKRSRLSRN RTVNR YGGVLSGGAVRERIIRAF
Sbjct:   49 KRIQGIPHLRPTEYKRSRLSRNRRTVNRAYGGVLSGGAVRERIIRAF 95          

HSP 2 Score: 32.3426 bits (72), Expect = 4.445e-21
Identity = 13/13 (100.00%), Postives = 13/13 (100.00%), Query Frame = -2
Query:  450 RASGPKCPVTGKR 488
            RASGPKCPVTGKR
Sbjct:   38 RASGPKCPVTGKR 50          
BLAST of CX306101 vs. ExPASy Swiss-Prot
Match: RL341_ARATH (60S ribosomal protein L34-1 OS=Arabidopsis thaliana GN=RPL34A PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.656e-20
Identity = 42/47 (89.36%), Postives = 43/47 (91.49%), Query Frame = -3
Query:  314 KGIQGIPHLRPAEYKRSRLSRNHRTVNRTYGGVLSGGAVRERIIRAF 454
            K IQGIPHLRP+EYKRSRLSRN RTVNR YGGVLSG AVRERIIRAF
Sbjct:   49 KRIQGIPHLRPSEYKRSRLSRNRRTVNRAYGGVLSGSAVRERIIRAF 95          

HSP 2 Score: 32.3426 bits (72), Expect = 1.656e-20
Identity = 13/13 (100.00%), Postives = 13/13 (100.00%), Query Frame = -2
Query:  450 RASGPKCPVTGKR 488
            RASGPKCPVTGKR
Sbjct:   38 RASGPKCPVTGKR 50          
BLAST of CX306101 vs. ExPASy Swiss-Prot
Match: RL34_TOBAC (60S ribosomal protein L34 OS=Nicotiana tabacum GN=RPL34 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.155e-20
Identity = 42/47 (89.36%), Postives = 42/47 (89.36%), Query Frame = -3
Query:  314 KGIQGIPHLRPAEYKRSRLSRNHRTVNRTYGGVLSGGAVRERIIRAF 454
            K IQGIPHLRP EYKRSRLSRN RTVNR YGGVLSG AVRERIIRAF
Sbjct:   49 KRIQGIPHLRPTEYKRSRLSRNRRTVNRAYGGVLSGSAVRERIIRAF 95          

HSP 2 Score: 32.3426 bits (72), Expect = 2.155e-20
Identity = 13/13 (100.00%), Postives = 13/13 (100.00%), Query Frame = -2
Query:  450 RASGPKCPVTGKR 488
            RASGPKCPVTGKR
Sbjct:   38 RASGPKCPVTGKR 50          
BLAST of CX306101 vs. ExPASy Swiss-Prot
Match: RL342_ARATH (60S ribosomal protein L34-2 OS=Arabidopsis thaliana GN=RPL34B PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.155e-20
Identity = 42/47 (89.36%), Postives = 42/47 (89.36%), Query Frame = -3
Query:  314 KGIQGIPHLRPAEYKRSRLSRNHRTVNRTYGGVLSGGAVRERIIRAF 454
            K IQGIPHLRP EYKRSRLSRN RTVNR YGGVLSG AVRERIIRAF
Sbjct:   49 KRIQGIPHLRPTEYKRSRLSRNRRTVNRAYGGVLSGSAVRERIIRAF 95          

HSP 2 Score: 32.3426 bits (72), Expect = 2.155e-20
Identity = 13/13 (100.00%), Postives = 13/13 (100.00%), Query Frame = -2
Query:  450 RASGPKCPVTGKR 488
            RASGPKCPVTGKR
Sbjct:   38 RASGPKCPVTGKR 50          
BLAST of CX306101 vs. ExPASy Swiss-Prot
Match: RL343_ARATH (60S ribosomal protein L34-3 OS=Arabidopsis thaliana GN=RPL34C PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.744e-20
Identity = 41/47 (87.23%), Postives = 43/47 (91.49%), Query Frame = -3
Query:  314 KGIQGIPHLRPAEYKRSRLSRNHRTVNRTYGGVLSGGAVRERIIRAF 454
            K IQGIPHLRPAEYKRSRL+RN RTVNR YGGVLSG AVRERI+RAF
Sbjct:   49 KRIQGIPHLRPAEYKRSRLARNERTVNRAYGGVLSGVAVRERIVRAF 95          

HSP 2 Score: 32.3426 bits (72), Expect = 4.744e-20
Identity = 13/13 (100.00%), Postives = 13/13 (100.00%), Query Frame = -2
Query:  450 RASGPKCPVTGKR 488
            RASGPKCPVTGKR
Sbjct:   38 RASGPKCPVTGKR 50          
The following BLAST results are available for this feature:
BLAST of CX306101 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
RL34_PEA4.445e-2191.4960S ribosomal protein L34 OS=Pisum sativum GN=RPL3... [more]
RL341_ARATH1.656e-2089.3660S ribosomal protein L34-1 OS=Arabidopsis thalian... [more]
RL34_TOBAC2.155e-2089.3660S ribosomal protein L34 OS=Nicotiana tabacum GN=... [more]
RL342_ARATH2.155e-2089.3660S ribosomal protein L34-2 OS=Arabidopsis thalian... [more]
RL343_ARATH4.744e-2087.2360S ribosomal protein L34-3 OS=Arabidopsis thalian... [more]
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Properties
Property NameValue
Genbank descriptionC18014A05Rv Drought1 Citrus clementina cDNA clone C18014A05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX306101 ID=CX306101; Name=CX306101; organism=Citrus clementina; type=EST; length=492bp
TTTTTTTTTTTTTTTTTTTTGAACGAGGGTCTCAAAATTAACTACTTAAT
TTTAATAAACCAAGAACCGGTAATTGATTTCTCTTCAAAATTTAAGTAAT
CAATATCAAACAGACTAAATAATATAAAAGAACGTTCAACTCTCTCAGTA
CCACATCATTGATCATAACCACACCAAAATTTCTCTATCCCACGTTCTAC
AGTTGAAAAAGGATTAGCTTTTATCTTCCCATTTTCTAGCTCTTTAAGGC
CTGCTTTTCCTTTGCTTTCTGGATCTTCAAAACTTTCTTCACAATCTTCT
GTTCTTCCACCAAGAATGCTCGAATTATCCTCTCCCTGACAGCCCCACCA
GACAATACTCCACCATAAGTGCGATTCACAGTCCTGTGGTTTCTTGACAA
TCTAGACCTCTTGTACTCAGCAGGTCTCAAGTGAGGAATTCCTTGGATCC
CTTTTTCCAGTGACAGGACACTTAGGCCCACTTGCTCTCCCG
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