CX306104

Overview
NameCX306104
Unique NameCX306104
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length520
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX306104 vs. ExPASy Swiss-Prot
Match: ASP_THECC (21 kDa seed protein OS=Theobroma cacao GN=ASP PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 3.165e-20
Identity = 52/155 (33.55%), Postives = 86/155 (55.48%), Query Frame = 2
Query:   62 ATTLSFLILALASNSLLVLGTSSVPEPLLDVHGNKVESTLKYYIVSAIWXXXXXXXXXXXXXXXYCPLDVIQLPSDMQNGIELTLSPYNNST-IVRESTDLNLRFSVLLSGRD-YCNEQPLWKVDNYDAASGKWFITTGGLDGHPGAETLLNWFK 520
            AT +  L+ A  S S      ++   P+LD  G+++++ ++YY++S+I                 CP  V+Q  SD+ NG  +  S  ++   +VR STD+N+ F  +   RD  C+   +W++DNYD ++GKW++TT G+ G PG  TL +WFK
Sbjct:    4 ATAVVLLLFAFTSKSYFFGVANAANSPVLDTDGDELQTGVQYYVLSSISGAGGGGLALGRATGQSCPEIVVQRRSDLDNGTPVIFSNADSKDDVVRVSTDVNIEFVPI---RDRLCSTSTVWRLDNYDNSAGKWWVTTDGVKGEPGPNTLCSWFK 155          
BLAST of CX306104 vs. ExPASy Swiss-Prot
Match: MIRA_RICDU (Miraculin OS=Richadella dulcifica PE=1 SV=3)

HSP 1 Score: 90.1225 bits (222), Expect = 6.598e-18
Identity = 53/159 (33.33%), Postives = 81/159 (50.94%), Query Frame = 2
Query:   53 ISLATTLSFLILALASNSLLVLGTSSVPEPLLDVHGNKVESTLKYYIVSAI--WXXXXXXXXXXXXXXXYCPLDVIQLPSDMQNGIELTLSPYN-NSTIVRESTDLNLRFSVLLSGRDYCNEQPLWKVDNYDAASGKWFITTGGLDGHPGAETLLNWFK 520
            +SL+      +LA A+N LL     S P P+LD+ G K+ +   YYIV  +                   CP  V+Q   ++ +   L   P N    +VR STDLN+ FS  +  R       +W++D YD ++G++F+T GG+ G+PG ET+ +WFK
Sbjct:    7 LSLSFFFVSALLAAAANPLLS-AADSAPNPVLDIDGEKLRTGTNYYIVPVLRDHGGGLTVSATTPNGTFVCPPRVVQTRKEVDHDRPLAFFPENPKEDVVRVSTDLNINFSAFMPCR--WTSSTVWRLDKYDESTGQYFVTIGGVKGNPGPETISSWFK 162          
BLAST of CX306104 vs. ExPASy Swiss-Prot
Match: LSPI_CARPA (Latex serine proteinase inhibitor OS=Carica papaya PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.197e-13
Identity = 47/132 (35.61%), Postives = 67/132 (50.76%), Query Frame = 2
Query:  134 PEPLLDVHGNKVESTLKYYIVSAIWXXXXXXXXXXXXXXXY-CPLDVIQLPSDMQNGIELTLSPYNN--STIVRESTDLNLRFSVLLSGRDYCNEQPLWKVDNYDAASGKWFITTGGLDGHPGAETLLNWFK 520
            P+P++D+ G  V   + Y++VSAIW                 CPL V+Q P D  NG  +  S   N    IV ES DLN++F++ ++    CNE   WKVD +    G W +T GG  G+ G E+  + FK
Sbjct:    3 PKPIVDIDGKPVLYGVDYFVVSAIWGAGGGGLTVYGPGNKKKCPLSVVQDPFD--NGEPIIFSAIKNVKDNIVFESVDLNVKFNITIN----CNETTAWKVDRFPGVIG-WTVTLGGEKGYHGFESTHSMFK 127          
The following BLAST results are available for this feature:
BLAST of CX306104 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
ASP_THECC3.165e-2033.5521 kDa seed protein OS=Theobroma cacao GN=ASP PE=2... [more]
MIRA_RICDU6.598e-1833.33Miraculin OS=Richadella dulcifica PE=1 SV=3[more]
LSPI_CARPA2.197e-1335.61Latex serine proteinase inhibitor OS=Carica papaya... [more]
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Properties
Property NameValue
Genbank descriptionC18014A08Rv Drought1 Citrus clementina cDNA clone C18014A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX306104 ID=CX306104; Name=CX306104; organism=Citrus clementina; type=EST; length=520bp
GCGGGGAACGCGCATCAAACAGATATATAGCTTTGAAAACAACAAAATGA
AGATTTCATTAGCAACAACACTCTCTTTCCTTATCCTTGCCTTGGCCTCA
AACTCTTTGTTGGTCTTGGGCACCTCATCAGTTCCTGAACCTCTCCTTGA
TGTCCACGGAAACAAGGTCGAATCCACCCTTAAGTACTACATAGTCTCAG
CCATCTGGGGAGCTGGCGGTGGTGGAGTTAGCCTACACGGTGGCAGAAAC
GGATATTGTCCGCTGGACGTTATCCAGTTACCTTCTGATATGCAAAATGG
AATCGAATTAACACTGTCACCGTATAACAATTCTACAATTGTCCGAGAAT
CCACTGATCTCAACTTGAGATTCTCAGTGTTGCTATCTGGACGTGACTAT
TGTAACGAACAACCGTTGTGGAAAGTTGATAATTATGACGCGGCATCAGG
CAAATGGTTTATAACAACCGGGGGACTTGATGGTCACCCTGGAGCTGAAA
CTTTGCTAAATTGGTTTAAG
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