CX306110

Overview
NameCX306110
Unique NameCX306110
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length517
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14593 contig Ccv1_Contig14593:504..1020. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX306110 vs. ExPASy Swiss-Prot
Match: DHAR1_ARATH (Glutathione S-transferase DHAR1, mitochondrial OS=Arabidopsis thaliana GN=DHAR1 PE=1 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 3.922e-31
Identity = 60/80 (75.00%), Postives = 70/80 (87.50%), Query Frame = -1 
Query:  275 HLKTHGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVHGYTKKLFALESFQKTKAEKQYVIAGWVPKVN 514
            HLK+H GPFIAGE+V+AVDLSLAPKLYHLQVAL HFK W+VPES  HVH Y K LF+L+SF+KTK E++YVI+GW PKVN
Sbjct:  133 HLKSHDGPFIAGERVSAVDLSLAPKLYHLQVALGHFKSWSVPESFPHVHNYMKTLFSLDSFEKTKTEEKYVISGWAPKVN 212
The following BLAST results are available for this feature:
BLAST of CX306110 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
DHAR1_ARATH3.922e-3175.00Glutathione S-transferase DHAR1, mitochondrial OS=... [more]
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Properties
Property NameValue
Genbank descriptionC18014B02Rv Drought1 Citrus clementina cDNA clone C18014B02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX306110 ID=CX306110; Name=CX306110; organism=Citrus clementina; type=EST; length=517bp
TTTTTTTTTTTTTTTTTTTTTGGAACTTGGATTTGACAAAATCCAATGGA
TTTAAACCATTTAATACCCGTAGGAGATATCCAGGAACTAAGAGTAAATA
CCATTCAACCAGGAGGTTTCATTATAACAAATAGCAAATATCATCGTAGC
CACCTTTATTGGATGATACAAACCCCCAGTGAACATTCTAATTATACTCC
AAGTCTCACACATACATTACTCGCATTTCATTAGCTAGATTTCAAACACC
GCATAGCTTAGAACTAGTTCATGCATTGACCTTCGGCACCCATCCTGCAA
TCACGTATTGCTTTTCAGCCTTAGTCTTCTGAAAGGATTCCAGAGCAAAA
AGCTTCTTCGTGTACCCATGGACATGAGCCAAGCTCTCAGGGACAGTCCA
CTGCTTGAAATGTTCAAGAGCTACCTGAAGGTGGTACAGCTTTGGTGCCA
AGCTCAAATCTACAGCAGTGACCTTCTCTCCAGCAATGAATGGACCTCCA
TGAGTCTTAAGATGCTC
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