CX306117

Overview
NameCX306117
Unique NameCX306117
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length302
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX306117 vs. ExPASy Swiss-Prot
Match: AB21B_ARATH (ABC transporter B family member 21 OS=Arabidopsis thaliana GN=ABCB21 PE=1 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 8.522e-39
Identity = 83/92 (90.22%), Postives = 86/92 (93.48%), Query Frame = -1
Query:   27 RAIVKDPKILLLDEATSALDAESERVVQDALDRVMKNRTTVVVAHRLSTIKNADMIAVVKNGVIVEKGKHENLINIPDGFYASLIALHSSAS 302
            RAIVKDPK+LLLDEATSALDAESERVVQDALDRVM NRTTVVVAHRLSTIKNAD+IAVVKNGVIVEKGKHE LINI DG YASL+ LH SAS
Sbjct: 1200 RAIVKDPKVLLLDEATSALDAESERVVQDALDRVMVNRTTVVVAHRLSTIKNADVIAVVKNGVIVEKGKHETLINIKDGVYASLVQLHLSAS 1291          

HSP 2 Score: 129.413 bits (324), Expect = 5.537e-30
Identity = 64/87 (73.56%), Postives = 75/87 (86.21%), Query Frame = -1
Query:   42 RAIVKDPKILLLDEATSALDAESERVVQDALDRVMKNRTTVVVAHRLSTIKNADMIAVVKNGVIVEKGKHENLINIPDGFYASLIAL 302
            RAI+KDP+ILLLDEATSALDAESER+VQ+ALDR+M NRTTVVVAHRLST++NADMIAV+  G IVEKG H  L+  P+G Y+ LI L
Sbjct:  554 RAILKDPRILLLDEATSALDAESERIVQEALDRIMVNRTTVVVAHRLSTVRNADMIAVIHQGKIVEKGSHSELLRDPEGAYSQLIRL 640          
BLAST of CX306117 vs. ExPASy Swiss-Prot
Match: AB4B_ARATH (ABC transporter B family member 4 OS=Arabidopsis thaliana GN=ABCB4 PE=1 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 1.231e-37
Identity = 79/92 (85.87%), Postives = 86/92 (93.48%), Query Frame = -1
Query:   27 RAIVKDPKILLLDEATSALDAESERVVQDALDRVMKNRTTVVVAHRLSTIKNADMIAVVKNGVIVEKGKHENLINIPDGFYASLIALHSSAS 302
            RAIVKDPK+LLLDEATSALDAESERVVQDALDRVM NRTT+VVAHRLSTIKNAD+IAVVKNGVIVEKGKH+ LINI DG YASL+ LH +A+
Sbjct: 1194 RAIVKDPKVLLLDEATSALDAESERVVQDALDRVMVNRTTIVVAHRLSTIKNADVIAVVKNGVIVEKGKHDTLINIKDGVYASLVQLHLTAA 1285          

HSP 2 Score: 129.413 bits (324), Expect = 5.537e-30
Identity = 65/87 (74.71%), Postives = 75/87 (86.21%), Query Frame = -1
Query:   42 RAIVKDPKILLLDEATSALDAESERVVQDALDRVMKNRTTVVVAHRLSTIKNADMIAVVKNGVIVEKGKHENLINIPDGFYASLIAL 302
            RAI+KDP+ILLLDEATSALDAESERVVQ+ALDR+M NRTTVVVAHRLST++NADMIAV+  G IVEKG H  L+  P+G Y+ LI L
Sbjct:  535 RAILKDPRILLLDEATSALDAESERVVQEALDRIMVNRTTVVVAHRLSTVRNADMIAVIHQGKIVEKGSHTELLKDPEGAYSQLIRL 621          
BLAST of CX306117 vs. ExPASy Swiss-Prot
Match: AB3B_ARATH (ABC transporter B family member 3 OS=Arabidopsis thaliana GN=ABCB3 PE=1 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 6.107e-37
Identity = 81/92 (88.04%), Postives = 84/92 (91.30%), Query Frame = -1
Query:   27 RAIVKDPKILLLDEATSALDAESERVVQDALDRVMKNRTTVVVAHRLSTIKNADMIAVVKNGVIVEKGKHENLINIPDGFYASLIALHSSAS 302
            RAIVK+PKILLLDEATSALDAESERVVQDALDRVM NRTTVVVAHRLSTIKNAD+IAVVKNGVIVEKG HE LINI  G YASL+ LH SAS
Sbjct: 1137 RAIVKEPKILLLDEATSALDAESERVVQDALDRVMVNRTTVVVAHRLSTIKNADVIAVVKNGVIVEKGTHETLINIEGGVYASLVQLHISAS 1228          

HSP 2 Score: 124.405 bits (311), Expect = 1.781e-28
Identity = 63/87 (72.41%), Postives = 74/87 (85.06%), Query Frame = -1
Query:   42 RAIVKDPKILLLDEATSALDAESERVVQDALDRVMKNRTTVVVAHRLSTIKNADMIAVVKNGVIVEKGKHENLINIPDGFYASLIAL 302
            RAI+KDP+ILLLDEATSALDAESERVVQ+ALDRVM +RTTV+VAHRLST++NADMIAV+  G IVE+G H  L+   +G YA LI L
Sbjct:  499 RAILKDPRILLLDEATSALDAESERVVQEALDRVMMSRTTVIVAHRLSTVRNADMIAVIHRGKIVEEGSHSELLKDHEGAYAQLIRL 585          
BLAST of CX306117 vs. ExPASy Swiss-Prot
Match: AB5B_ARATH (ABC transporter B family member 5 OS=Arabidopsis thaliana GN=ABCB5 PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 5.170e-36
Identity = 78/92 (84.78%), Postives = 83/92 (90.22%), Query Frame = -1
Query:   27 RAIVKDPKILLLDEATSALDAESERVVQDALDRVMKNRTTVVVAHRLSTIKNADMIAVVKNGVIVEKGKHENLINIPDGFYASLIALHSSAS 302
            RAIVK+PKILLLDEATSALDAESERVVQDALDRVM NRTT+VVAHRLSTIKNAD+IAVVKNGVI EKG HE LINI  G YASL+ LH +AS
Sbjct: 1138 RAIVKEPKILLLDEATSALDAESERVVQDALDRVMVNRTTIVVAHRLSTIKNADVIAVVKNGVIAEKGTHETLINIEGGVYASLVQLHINAS 1229          

HSP 2 Score: 122.094 bits (305), Expect = 8.839e-28
Identity = 60/87 (68.97%), Postives = 74/87 (85.06%), Query Frame = -1
Query:   42 RAIVKDPKILLLDEATSALDAESERVVQDALDRVMKNRTTVVVAHRLSTIKNADMIAVVKNGVIVEKGKHENLINIPDGFYASLIAL 302
            RAI+KDP+ILLLDEATSALDAESERVVQ+ALDR+M NRTTV+VAHRLST++NAD+IAV+  G IVE+G H  L+   +G Y+ L+ L
Sbjct:  504 RAILKDPRILLLDEATSALDAESERVVQEALDRIMVNRTTVIVAHRLSTVRNADIIAVIHRGKIVEEGSHSELLKDHEGAYSQLLRL 590          
BLAST of CX306117 vs. ExPASy Swiss-Prot
Match: AB11B_ARATH (ABC transporter B family member 11 OS=Arabidopsis thaliana GN=ABCB11 PE=2 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 1.965e-35
Identity = 77/92 (83.70%), Postives = 82/92 (89.13%), Query Frame = -1
Query:   27 RAIVKDPKILLLDEATSALDAESERVVQDALDRVMKNRTTVVVAHRLSTIKNADMIAVVKNGVIVEKGKHENLINIPDGFYASLIALHSSAS 302
            RAIVK+PKILLLDEATSALDAESERVVQDALDRVM NRTT+VVAHRLSTIKNAD+IAVVKNGVI EKG HE LI I  G YASL+ LH +AS
Sbjct: 1186 RAIVKEPKILLLDEATSALDAESERVVQDALDRVMVNRTTIVVAHRLSTIKNADVIAVVKNGVIAEKGTHETLIKIEGGVYASLVQLHMTAS 1277          

HSP 2 Score: 125.561 bits (314), Expect = 7.995e-29
Identity = 63/87 (72.41%), Postives = 74/87 (85.06%), Query Frame = -1
Query:   42 RAIVKDPKILLLDEATSALDAESERVVQDALDRVMKNRTTVVVAHRLSTIKNADMIAVVKNGVIVEKGKHENLINIPDGFYASLIAL 302
            RAI+KDP+ILLLDEATSALDAESERVVQ+ALDRVM NRTTV+VAHRLST++NADMIAV+  G +VEKG H  L+   +G Y+ LI L
Sbjct:  532 RAILKDPRILLLDEATSALDAESERVVQEALDRVMVNRTTVIVAHRLSTVRNADMIAVIHRGKMVEKGSHSELLKDSEGAYSQLIRL 618          
BLAST of CX306117 vs. ExPASy Swiss-Prot
Match: AB12B_ARATH (ABC transporter B family member 12 OS=Arabidopsis thaliana GN=ABCB12 PE=2 SV=2)

HSP 1 Score: 142.895 bits (359), Expect = 4.839e-34
Identity = 74/92 (80.43%), Postives = 81/92 (88.04%), Query Frame = -1
Query:   27 RAIVKDPKILLLDEATSALDAESERVVQDALDRVMKNRTTVVVAHRLSTIKNADMIAVVKNGVIVEKGKHENLINIPDGFYASLIALHSSAS 302
            RAIVK+PKILLLDEATSALDAESER+VQDALDRV+ NRTTVVVAHRLSTIKNAD+IA+VKNGVI E G HE LI I  G YASL+ LH +AS
Sbjct: 1181 RAIVKEPKILLLDEATSALDAESERLVQDALDRVIVNRTTVVVAHRLSTIKNADVIAIVKNGVIAENGTHETLIKIDGGVYASLVQLHMTAS 1272          

HSP 2 Score: 121.324 bits (303), Expect = 1.508e-27
Identity = 61/85 (71.76%), Postives = 72/85 (84.71%), Query Frame = -1
Query:   48 RAIVKDPKILLLDEATSALDAESERVVQDALDRVMKNRTTVVVAHRLSTIKNADMIAVVKNGVIVEKGKHENLINIPDGFYASLI 302
            RAI+KDP++LLLDEATSALD ESERVVQ+ALDRVM NRTTVVVAHRLST++NADMIAV+ +G +VEKG H  L+    G Y+ LI
Sbjct:  519 RAILKDPRVLLLDEATSALDTESERVVQEALDRVMVNRTTVVVAHRLSTVRNADMIAVIHSGKMVEKGSHSELLKDSVGAYSQLI 603          
BLAST of CX306117 vs. ExPASy Swiss-Prot
Match: AB7B_ARATH (ABC transporter B family member 7 OS=Arabidopsis thaliana GN=ABCB7 PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 1.557e-32
Identity = 72/92 (78.26%), Postives = 81/92 (88.04%), Query Frame = -1
Query:   27 RAIVKDPKILLLDEATSALDAESERVVQDALDRVMKNRTTVVVAHRLSTIKNADMIAVVKNGVIVEKGKHENLINIPDGFYASLIALHSSAS 302
            RAI+KDPKILLLDEATSALDAESERVVQDALD+VM NRTTVVVAH L+TIK+ADMIAVVKNGVI E G+HE L+ I  G YASL+A + SA+
Sbjct: 1157 RAILKDPKILLLDEATSALDAESERVVQDALDQVMVNRTTVVVAHLLTTIKDADMIAVVKNGVIAESGRHETLMEISGGAYASLVAFNMSAN 1248          

HSP 2 Score: 120.553 bits (301), Expect = 2.572e-27
Identity = 59/91 (64.84%), Postives = 76/91 (83.52%), Query Frame = -1
Query:   30 RAIVKDPKILLLDEATSALDAESERVVQDALDRVMKNRTTVVVAHRLSTIKNADMIAVVKNGVIVEKGKHENLINIPDGFYASLIALHSSA 302
            RAI+K+PKILLLDEATSALDAESER+VQDAL ++M +RTTVVVAHRL+TI+ ADMIAVV+ G ++EKG H+ +I  P+G Y+ L+ L   +
Sbjct:  508 RAILKNPKILLLDEATSALDAESERIVQDALVKLMLSRTTVVVAHRLTTIRTADMIAVVQQGKVIEKGTHDEMIKDPEGTYSQLVRLQEGS 598          
BLAST of CX306117 vs. ExPASy Swiss-Prot
Match: AB2B_ARATH (ABC transporter B family member 2 OS=Arabidopsis thaliana GN=ABCB2 PE=1 SV=2)

HSP 1 Score: 129.798 bits (325), Expect = 4.239e-30
Identity = 68/92 (73.91%), Postives = 78/92 (84.78%), Query Frame = -1
Query:   27 RAIVKDPKILLLDEATSALDAESERVVQDALDRVMKNRTTVVVAHRLSTIKNADMIAVVKNGVIVEKGKHENLINIPDGFYASLIALHSSAS 302
            RAIVK+P ILLLDEATSALDAESE+ VQ+ALDRVM  RTTVVVAHRLST++NAD+IAVV  G IVE G HENLI+ PDG Y+SL+ L  +AS
Sbjct:  512 RAIVKNPSILLLDEATSALDAESEKSVQEALDRVMVGRTTVVVAHRLSTVRNADIIAVVHEGKIVEFGNHENLISNPDGAYSSLLRLQETAS 603          

HSP 2 Score: 114.005 bits (284), Expect = 2.407e-25
Identity = 61/87 (70.11%), Postives = 69/87 (79.31%), Query Frame = -1
Query:   42 RAIVKDPKILLLDEATSALDAESERVVQDALDRVMKNRTTVVVAHRLSTIKNADMIAVVKNGVIVEKGKHENLINIPDGFYASLIAL 302
            RAI+K+P ILLLDEATSALD ESERVVQ ALDR+M NRTTVVVAHRLSTIKNAD I+V+  G IVE+G H  L+    G Y  LI+L
Sbjct: 1141 RAILKNPAILLLDEATSALDVESERVVQQALDRLMANRTTVVVAHRLSTIKNADTISVLHGGKIVEQGSHRKLVLNKSGPYFKLISL 1227          
BLAST of CX306117 vs. ExPASy Swiss-Prot
Match: AB9B_ARATH (ABC transporter B family member 9 OS=Arabidopsis thaliana GN=ABCB9 PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 1.233e-29
Identity = 66/73 (90.41%), Postives = 70/73 (95.89%), Query Frame = -1
Query:   84 RAIVKDPKILLLDEATSALDAESERVVQDALDRVMKNRTTVVVAHRLSTIKNADMIAVVKNGVIVEKGKHENL 302
            RAI+KDPKILLLDEATSALDAESERVVQDALDRVM NRTTVVVAHRL+TIKNAD+IAVVKNGVI EKG+HE L
Sbjct: 1187 RAILKDPKILLLDEATSALDAESERVVQDALDRVMVNRTTVVVAHRLTTIKNADVIAVVKNGVIAEKGRHETL 1259          

HSP 2 Score: 120.939 bits (302), Expect = 1.969e-27
Identity = 61/91 (67.03%), Postives = 74/91 (81.32%), Query Frame = -1
Query:   30 RAIVKDPKILLLDEATSALDAESERVVQDALDRVMKNRTTVVVAHRLSTIKNADMIAVVKNGVIVEKGKHENLINIPDGFYASLIALHSSA 302
            RAI+K+PKILLLDEATSALDAESER+VQDAL  +M NRTTVVVAHRL+TI+ AD+IAVV  G IVEKG H+ +I  P+G Y+ L+ L   +
Sbjct:  506 RAILKNPKILLLDEATSALDAESERIVQDALVNLMSNRTTVVVAHRLTTIRTADVIAVVHQGKIVEKGTHDEMIQDPEGAYSQLVRLQEGS 596          
BLAST of CX306117 vs. ExPASy Swiss-Prot
Match: AB10B_ARATH (ABC transporter B family member 10 OS=Arabidopsis thaliana GN=ABCB10 PE=1 SV=2)

HSP 1 Score: 127.872 bits (320), Expect = 1.611e-29
Identity = 64/92 (69.57%), Postives = 78/92 (84.78%), Query Frame = -1
Query:   27 RAIVKDPKILLLDEATSALDAESERVVQDALDRVMKNRTTVVVAHRLSTIKNADMIAVVKNGVIVEKGKHENLINIPDGFYASLIALHSSAS 302
            RAIVK+P ILLLDEATSALDAESE++VQ+ALDRVM  RTTVVVAHRLST++NAD+IAVV  G I+E G H+ LI+ PDG Y+SL+ +  +AS
Sbjct:  512 RAIVKNPSILLLDEATSALDAESEKIVQEALDRVMVGRTTVVVAHRLSTVRNADIIAVVGGGKIIESGSHDELISNPDGAYSSLLRIQEAAS 603          

HSP 2 Score: 117.857 bits (294), Expect = 1.667e-26
Identity = 58/87 (66.67%), Postives = 76/87 (87.36%), Query Frame = -1
Query:   42 RAIVKDPKILLLDEATSALDAESERVVQDALDRVMKNRTTVVVAHRLSTIKNADMIAVVKNGVIVEKGKHENLINIPDGFYASLIAL 302
            RA++K+P+ILLLDEATSALD ESERVVQ ALDR+M++RTTVVVAHRLSTIKN+DMI+V+++G I+E+G H  L+   +G Y+ LI+L
Sbjct: 1133 RAVLKNPEILLLDEATSALDVESERVVQQALDRLMRDRTTVVVAHRLSTIKNSDMISVIQDGKIIEQGSHNILVENKNGPYSKLISL 1219          
The following BLAST results are available for this feature:
BLAST of CX306117 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 313
Match NameE-valueIdentityDescription
AB21B_ARATH8.522e-3990.22ABC transporter B family member 21 OS=Arabidopsis ... [more]
AB4B_ARATH1.231e-3785.87ABC transporter B family member 4 OS=Arabidopsis t... [more]
AB3B_ARATH6.107e-3788.04ABC transporter B family member 3 OS=Arabidopsis t... [more]
AB5B_ARATH5.170e-3684.78ABC transporter B family member 5 OS=Arabidopsis t... [more]
AB11B_ARATH1.965e-3583.70ABC transporter B family member 11 OS=Arabidopsis ... [more]
AB12B_ARATH4.839e-3480.43ABC transporter B family member 12 OS=Arabidopsis ... [more]
AB7B_ARATH1.557e-3278.26ABC transporter B family member 7 OS=Arabidopsis t... [more]
AB2B_ARATH4.239e-3073.91ABC transporter B family member 2 OS=Arabidopsis t... [more]
AB9B_ARATH1.233e-2990.41ABC transporter B family member 9 OS=Arabidopsis t... [more]
AB10B_ARATH1.611e-2969.57ABC transporter B family member 10 OS=Arabidopsis ... [more]

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Properties
Property NameValue
Genbank descriptionC18014B09Rv Drought1 Citrus clementina cDNA clone C18014B09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX306117 ID=CX306117; Name=CX306117; organism=Citrus clementina; type=EST; length=302bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTGAAGCACTAGAGTGAAGTGCTAT
TAAGGAGGCATAAAATCCATCAGGAATATTAATCAAATTCTCATGCTTTC
CTTTCTCCACTATAACTCCATTTTTGACCACTGCAATCATGTCTGCATTC
TTGATAGTGGACAAACGATGAGCTACCACAACTGTGGTTCTGTTCTTCAT
TACCCGGTCCAATGCATCTTGAACTACCCGTTCAGATTCAGCATCAAGCG
CACTGGTAGCTTCATCTAAGAGTAATATCTTAGGATCTTTAACTATAGCT
CG
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