CX306118

Overview
NameCX306118
Unique NameCX306118
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length449
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig696 contig Ccv1_Contig696:324..773. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX306118 vs. ExPASy Swiss-Prot
Match: ELI_PEA (Early light-induced protein, chloroplastic OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 2.001e-42
Identity = 86/110 (78.18%), Postives = 96/110 (87.27%), Query Frame = -3
Query:  106 FSKVFAFSGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLSDGGVAWFLGTSVLLTAASLVPLFKGVSVESKSDGFMTSDAELWNGRFAMLGLVALAFTEFVRGGTLV 435
            FS + AFSGPAPERINGRLAMIGFVAA+GVEI+KGQ +  QLS GGVAWFLGTSVLL+ ASL+P F+GVSVESKS   M+SDAE WNGR AMLGLVALAFTEFV+G +LV
Sbjct:   87 FSDLMAFSGPAPERINGRLAMIGFVAAMGVEIAKGQGLSEQLSGGGVAWFLGTSVLLSLASLIPFFQGVSVESKSKSIMSSDAEFWNGRIAMLGLVALAFTEFVKGTSLV 196          
BLAST of CX306118 vs. ExPASy Swiss-Prot
Match: DS22_CRAPL (Desiccation stress protein DSP-22, chloroplastic OS=Craterostigma plantagineum GN=DSP-22 PE=2 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 2.142e-36
Identity = 69/107 (64.49%), Postives = 93/107 (86.92%), Query Frame = -3
Query:  106 VFAFSGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLSDGGVAWFLGTSVLLTAASLVPLFKGVSVESKSDGFMTSDAELWNGRFAMLGLVALAFTEFVRGGTLV 426
            +F+F G APERINGR AMIGFVAA+GVE++ G+DVF+Q+ +GGV WFL TS +L  A+L+P+++G+S E+K++GF  SDAE+WNGRFAM+GLVALAFTE+V+GG L+
Sbjct:   91 LFSFDGLAPERINGRSAMIGFVAAVGVELATGRDVFSQVFNGGVMWFLLTSAVLVLATLIPIYRGLSPEAKNNGFWNSDAEIWNGRFAMIGLVALAFTEYVKGGPLI 197          
BLAST of CX306118 vs. ExPASy Swiss-Prot
Match: ELI5_HORVU (High molecular mass early light-inducible protein HV58, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 3.540e-31
Identity = 68/107 (63.55%), Postives = 82/107 (76.64%), Query Frame = -3
Query:  106 AFSGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLS--DGGVAWFLGTSVLLTAASLVPLFKGVSVESKSDGFMTSDAELWNGRFAMLGLVALAFTEFVRGGTLV 420
            AFSGPAPERINGRLAM+GFVAAL VE ++G  +  Q+     G+AWFL T+ + + ASL+PL +G SVESKS G  ++DAELWNGRFAMLGLVALA TEF+ G   V
Sbjct:  123 AFSGPAPERINGRLAMVGFVAALSVEAARGGGLLDQVGMWSSGLAWFLATAGVFSVASLLPLLQGQSVESKSSGIWSADAELWNGRFAMLGLVALAATEFITGAPFV 229          
BLAST of CX306118 vs. ExPASy Swiss-Prot
Match: ELI9_HORVU (Low molecular mass early light-inducible protein HV90, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 1.644e-28
Identity = 63/106 (59.43%), Postives = 76/106 (71.70%), Query Frame = -3
Query:  106 AFSGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLSDG-GVAWFLGTSVLLTAASLVPLFKGVSVESKSDGFMTSDAELWNGRFAMLGLVALAFTEFVRGGTLV 420
            AFSGPAPERINGRLAM+GFV AL VE  +G  + +QL  G G AWF  T  +L+ ASLVPL +G S E ++   M ++AELWNGRFAMLGLVALA TE + G   +
Sbjct:   65 AFSGPAPERINGRLAMVGFVTALAVEAGRGDGLLSQLGSGTGQAWFAYTVAVLSMASLVPLLQGESAEGRAGAIMNANAELWNGRFAMLGLVALAATEIITGAPFI 170          
BLAST of CX306118 vs. ExPASy Swiss-Prot
Match: ELI6_HORVU (Low molecular mass early light-inducible protein HV60, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 3.663e-28
Identity = 62/102 (60.78%), Postives = 75/102 (73.53%), Query Frame = -3
Query:  118 AFSGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLSDG-GVAWFLGTSVLLTAASLVPLFKGVSVESKSDGFMTSDAELWNGRFAMLGLVALAFTEFVRG 420
            AFSGPAPERINGRLAM+GFV AL VE  +G  + +QL  G G AWF  T  +L+ ASLVPL +G S E ++   M ++AELWNGRFAM+GLVALA TE + G
Sbjct:   60 AFSGPAPERINGRLAMVGFVTALAVEAGRGDGLLSQLGSGTGQAWFAYTVAMLSMASLVPLLQGESAEGRAGAIMNANAELWNGRFAMIGLVALAATEIITG 161          
BLAST of CX306118 vs. ExPASy Swiss-Prot
Match: CBR_DUNBA (Carotene biosynthesis-related protein CBR, chloroplastic OS=Dunaliella bardawil GN=CBR PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 6.481e-17
Identity = 55/107 (51.40%), Postives = 67/107 (62.62%), Query Frame = -3
Query:  118 SKVFAFSGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLSDGGVAWFLGTSVLLTAASLVPLFKGVSVESKSD--GFMTSDAELWNGRFAMLGLVALAFTEFVRG 432
            ++V  FSG APE INGRLAM+GFVAALG E+S G+ V  QL D      L T VL +AASL+P F       K D  G  T DAE+ NGRFAM+G  A+   E ++G
Sbjct:   68 TEVMGFSG-APEIINGRLAMLGFVAALGAELSTGESVLTQLGDQPTLIAL-TFVLFSAASLIPAF----ARRKGDAMGPFTPDAEMTNGRFAMIGFAAMLVYEGIQG 168          
The following BLAST results are available for this feature:
BLAST of CX306118 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
ELI_PEA2.001e-4278.18Early light-induced protein, chloroplastic OS=Pisu... [more]
DS22_CRAPL2.142e-3664.49Desiccation stress protein DSP-22, chloroplastic O... [more]
ELI5_HORVU3.540e-3163.55High molecular mass early light-inducible protein ... [more]
ELI9_HORVU1.644e-2859.43Low molecular mass early light-inducible protein H... [more]
ELI6_HORVU3.663e-2860.78Low molecular mass early light-inducible protein H... [more]
CBR_DUNBA6.481e-1751.40Carotene biosynthesis-related protein CBR, chlorop... [more]
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Properties
Property NameValue
Genbank descriptionC18014B10Rv Drought1 Citrus clementina cDNA clone C18014B10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX306118 ID=CX306118; Name=CX306118; organism=Citrus clementina; type=EST; length=449bp
TTTTTTTTTTTTTTTTTTTTTTTTTGGGAATTAATTACAGTAGGATCTCA
TACATTAATTAGTTAAAAAAATACCGATCTACAGATCTAAACAAAATTAA
GCTTAAACAAGGGTGCCACCCCTAACAAACTCGGTGAAAGCCAAAGCAAC
AAGGCCCAGCATAGCAAACCTCCCATTCCACAACTCAGCATCCGAAGTCA
TGAACCCATCCGATTTAGACTCCACGCTGACACCTTTAAACAAAGGAACC
AGGGACGCAGCCGTGAGCAAAACACTGGTCCCCAAGAACCAGGCAACCCC
ACCGTCTGATAACTGGGCAAACACATCCTGACCCTTGGATATCTCCACCC
CCAATGCAGCCACGAACCCAATCATCGCAAGCCTCCCGTTTATCCTCTCC
GGTGCCGGCCCGCTGAACGCGAACACCTTAGAGAACCCCCGCGTACCTG
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