CX306130

Overview
NameCX306130
Unique NameCX306130
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length253
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10111 contig Ccv1_Contig10111:527..779. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX306130 vs. ExPASy Swiss-Prot
Match: ASP_THECC (21 kDa seed protein OS=Theobroma cacao GN=ASP PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.748e-12
Identity = 32/59 (54.24%), Postives = 39/59 (66.10%), Query Frame = -3 
Query:   75 GLDGHPGAETLLNWFKLEKTNLPGAYKIVHCPSVCESCVKLCSSVGRFSFEDGVRRLVL 251
            G+ G PG  TL +WFK+EK  + G YK   CPSVC+SC  LCS +GR S +DG  RL L
Sbjct:  140 GVKGEPGPNTLCSWFKIEKAGVLG-YKFRFCPSVCDSCTTLCSDIGRHSDDDGQIRLAL 197
The following BLAST results are available for this feature:
BLAST of CX306130 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
ASP_THECC8.748e-1254.2421 kDa seed protein OS=Theobroma cacao GN=ASP PE=2... [more]
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Properties
Property NameValue
Genbank descriptionC18014D01Rv Drought1 Citrus clementina cDNA clone C18014D01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX306130 ID=CX306130; Name=CX306130; organism=Citrus clementina; type=EST; length=253bp
ATTGATTACACAGACGTCGATCTTTCTCTAGCTGGAATTAACACAACAGG
AAAAGCCGGCTCATCATCACGAACCAGAACCAGACGTCGAACGCCATCCT
CAAACGAAAAGCGGCCAACGCTGCTGCAGAGTTTGACGCAAGACTCGCAA
ACAGATGGACAATGAACAATTTTGTATGCACCTGGTAGATTAGTTTTCTC
AAGCTTAAACCAATTTAGCAACGTTTCAGCTCCAGGGTGACCATCAAGTC
CCC
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