CX306131

Overview
NameCX306131
Unique NameCX306131
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length346
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9835 contig Ccv1_Contig9835:1..341. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX306131 vs. ExPASy Swiss-Prot
Match: PR4A_TOBAC (Pathogenesis-related protein PR-4A OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 1.134e-35
Identity = 68/102 (66.67%), Postives = 81/102 (79.41%), Query Frame = 3
Query:   42 KNMGRFGLCVILSVCLLVTA-ASAQSASNVRATYHLYHPEQIGWDLTAASAFCATWDANKPLAWRQKYGWTAFCHSGGPIGQAACGRCLRVTNSGTGAQQIV 344
            + +  + LCV L +  +V A A+AQSA+NVR+TYHLY+P+ I WDL AASAFCATWDA+KPLAWRQKYGWTAFC   GP GQ +CGRCLRVTN+GTG Q  V
Sbjct:    2 ERVNNYKLCVALLIISMVMAMAAAQSATNVRSTYHLYNPQNINWDLRAASAFCATWDADKPLAWRQKYGWTAFCGPAGPRGQDSCGRCLRVTNTGTGTQTTV 103          
BLAST of CX306131 vs. ExPASy Swiss-Prot
Match: PR4B_TOBAC (Pathogenesis-related protein PR-4B OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 2.527e-35
Identity = 66/102 (64.71%), Postives = 82/102 (80.39%), Query Frame = 3
Query:   42 KNMGRFGLCV-ILSVCLLVTAASAQSASNVRATYHLYHPEQIGWDLTAASAFCATWDANKPLAWRQKYGWTAFCHSGGPIGQAACGRCLRVTNSGTGAQQIV 344
            + +  + LCV +L + +++  A+AQSA+NVR+TYHLY+P+ I WDL AASAFCATWDA+KPLAWRQKYGWTAFC   GP GQ +CGRCLRVTN+GTG Q  V
Sbjct:    2 ERVNNYKLCVALLIMSVMMAMAAAQSATNVRSTYHLYNPQNINWDLRAASAFCATWDADKPLAWRQKYGWTAFCGPAGPRGQDSCGRCLRVTNTGTGTQATV 103          
BLAST of CX306131 vs. ExPASy Swiss-Prot
Match: PRP2_SOLLC (Pathogenesis-related protein P2 OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 1.062e-33
Identity = 62/95 (65.26%), Postives = 76/95 (80.00%), Query Frame = 3
Query:   63 LCVILSVC-LLVTAASAQSASNVRATYHLYHPEQIGWDLTAASAFCATWDANKPLAWRQKYGWTAFCHSGGPIGQAACGRCLRVTNSGTGAQQIV 344
            LCV   V  +++  A+AQSA+NVRATYHLY+P+ I WDL  AS +CATWDA+KPL WR++YGWTAFC   GP GQA+CGRCLRVTN+GTG Q+ V
Sbjct:    7 LCVAFFVINMMMAVAAAQSATNVRATYHLYNPQNINWDLRTASVYCATWDADKPLEWRRRYGWTAFCGPAGPTGQASCGRCLRVTNTGTGTQETV 101          
BLAST of CX306131 vs. ExPASy Swiss-Prot
Match: WIN1_SOLTU (Wound-induced protein WIN1 OS=Solanum tuberosum GN=WIN1 PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 7.121e-30
Identity = 54/83 (65.06%), Postives = 67/83 (80.72%), Query Frame = 3
Query:   96 TAASAQSASNVRATYHLYHPEQIGWDLTAASAFCATWDANKPLAWRQKYGWTAFCHSGGPIGQAACGRCLRVTNSGTGAQQIV 344
            T   + SA NVRATYH+Y+P+ +GWDL A SA+C+TWDANKPL+WR+KYGWTAFC   GP G+ +CG+CLRVTN+ TGAQ  V
Sbjct:   73 TPTPSGSAQNVRATYHIYNPQNVGWDLNAVSAYCSTWDANKPLSWRKKYGWTAFCGPVGPRGRDSCGKCLRVTNTRTGAQTTV 155          
BLAST of CX306131 vs. ExPASy Swiss-Prot
Match: WHW2_WHEAT (Wheatwin-2 OS=Triticum aestivum GN=PR4B PE=1 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 1.586e-29
Identity = 59/93 (63.44%), Postives = 67/93 (72.04%), Query Frame = 3
Query:   63 LCVILSVCLLVTAASAQSASNVRATYHLYHPEQIGWDL--TAASAFCATWDANKPLAWRQKYGWTAFCHSGGPIGQAACGRCLRVTNSGTGAQ 335
            + V   +C    AA+AQ A+NVRATYH Y P Q  WDL   A SA+CATWDA+KPL+WR KYGWTAFC   G  GQAACG+CLRVTN  TGAQ
Sbjct:    8 MLVAALLCAAAAAATAQQATNVRATYHYYRPAQNNWDLGAPAVSAYCATWDASKPLSWRSKYGWTAFCGPAGAHGQAACGKCLRVTNPATGAQ 100          
BLAST of CX306131 vs. ExPASy Swiss-Prot
Match: WIN2_SOLTU (Wound-induced protein WIN2 OS=Solanum tuberosum GN=WIN2 PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 2.706e-29
Identity = 53/77 (68.83%), Postives = 63/77 (81.82%), Query Frame = 3
Query:  114 SASNVRATYHLYHPEQIGWDLTAASAFCATWDANKPLAWRQKYGWTAFCHSGGPIGQAACGRCLRVTNSGTGAQQIV 344
            SA NVRATYH+Y+P+ +GWDL A SA+C+TWDANKP AWR KYGWTAFC   GP G+ +CG+CLRVTN+ TGAQ  V
Sbjct:   78 SAQNVRATYHIYNPQNVGWDLNAVSAYCSTWDANKPYAWRSKYGWTAFCGPVGPRGRDSCGKCLRVTNTRTGAQTTV 154          
BLAST of CX306131 vs. ExPASy Swiss-Prot
Match: WHW1_WHEAT (Wheatwin-1 OS=Triticum aestivum GN=PR4A PE=1 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 3.534e-29
Identity = 57/93 (61.29%), Postives = 68/93 (73.12%), Query Frame = 3
Query:   63 LCVILSVCLLVTAASAQSASNVRATYHLYHPEQIGWDL--TAASAFCATWDANKPLAWRQKYGWTAFCHSGGPIGQAACGRCLRVTNSGTGAQ 335
            + V+  +C    AA+AQ A+NVRATYH Y P Q  WDL   A SA+CATWDA+KPL+WR KYGWTAFC   G  GQA+CG+CL+VTN  TGAQ
Sbjct:    6 MLVVALLCAAAAAATAQQATNVRATYHYYRPAQNNWDLGAPAVSAYCATWDASKPLSWRSKYGWTAFCGPAGAHGQASCGKCLQVTNPATGAQ 98          
BLAST of CX306131 vs. ExPASy Swiss-Prot
Match: HEVE_HEVBR (Pro-hevein OS=Hevea brasiliensis GN=HEV1 PE=1 SV=2)

HSP 1 Score: 120.553 bits (301), Expect = 2.533e-27
Identity = 52/77 (67.53%), Postives = 62/77 (80.52%), Query Frame = 3
Query:  114 SASNVRATYHLYHPEQIGWDLTAASAFCATWDANKPLAWRQKYGWTAFCHSGGPIGQAACGRCLRVTNSGTGAQQIV 344
            SASNV ATYHLY+ +  GWDL AASA+C+TWDANKP +WR KYGWTAFC   G  GQ++CG+CL VTN+GTGA+  V
Sbjct:   69 SASNVLATYHLYNSQDHGWDLNAASAYCSTWDANKPYSWRSKYGWTAFCGPVGAHGQSSCGKCLSVTNTGTGAKTTV 145          
BLAST of CX306131 vs. ExPASy Swiss-Prot
Match: BARW_HORVU (Barwin OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 2.533e-27
Identity = 54/77 (70.13%), Postives = 60/77 (77.92%), Query Frame = 3
Query:  111 QSASNVRATYHLYHPEQIGWDL--TAASAFCATWDANKPLAWRQKYGWTAFCHSGGPIGQAACGRCLRVTNSGTGAQ 335
            Q A++VRATYH Y P Q  WDL   A SA+CATWDA+KPL+WR KYGWTAFC   GP GQAACG+CLRVTN  TGAQ
Sbjct:    1 QQANDVRATYHYYRPAQNNWDLGAPAVSAYCATWDASKPLSWRSKYGWTAFCGPAGPRGQAACGKCLRVTNPATGAQ 77          
BLAST of CX306131 vs. ExPASy Swiss-Prot
Match: HEVL_ARATH (Hevein-like protein OS=Arabidopsis thaliana GN=HEL PE=1 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 3.308e-27
Identity = 51/74 (68.92%), Postives = 59/74 (79.73%), Query Frame = 3
Query:  111 QSASNVRATYHLYHPEQIGWDLTAASAFCATWDANKPLAWRQKYGWTAFCHSGGPIGQAACGRCLRVTNSGTGA 332
            +SASNVRATYH Y+P Q  WDL A SA+C+TWDA+KP AWR KYGWTAFC   GP GQA+CG+CLRV N+ T A
Sbjct:   72 ESASNVRATYHFYNPAQNNWDLRAVSAYCSTWDADKPYAWRSKYGWTAFCGPAGPRGQASCGKCLRVKNTRTNA 145          
The following BLAST results are available for this feature:
BLAST of CX306131 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
PR4A_TOBAC1.134e-3566.67Pathogenesis-related protein PR-4A OS=Nicotiana ta... [more]
PR4B_TOBAC2.527e-3564.71Pathogenesis-related protein PR-4B OS=Nicotiana ta... [more]
PRP2_SOLLC1.062e-3365.26Pathogenesis-related protein P2 OS=Solanum lycoper... [more]
WIN1_SOLTU7.121e-3065.06Wound-induced protein WIN1 OS=Solanum tuberosum GN... [more]
WHW2_WHEAT1.586e-2963.44Wheatwin-2 OS=Triticum aestivum GN=PR4B PE=1 SV=1[more]
WIN2_SOLTU2.706e-2968.83Wound-induced protein WIN2 OS=Solanum tuberosum GN... [more]
WHW1_WHEAT3.534e-2961.29Wheatwin-1 OS=Triticum aestivum GN=PR4A PE=1 SV=1[more]
HEVE_HEVBR2.533e-2767.53Pro-hevein OS=Hevea brasiliensis GN=HEV1 PE=1 SV=2[more]
BARW_HORVU2.533e-2770.13Barwin OS=Hordeum vulgare PE=1 SV=1[more]
HEVL_ARATH3.308e-2768.92Hevein-like protein OS=Arabidopsis thaliana GN=HEL... [more]

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Properties
Property NameValue
Genbank descriptionC18014D02Rv Drought1 Citrus clementina cDNA clone C18014D02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX306131 ID=CX306131; Name=CX306131; organism=Citrus clementina; type=EST; length=346bp
GCGGGGGTGCAACGGATAAGTTAAGCTTAGAACATTAAGAGAAAAATATG
GGGAGGTTCGGTCTCTGCGTGATTCTGTCAGTTTGTCTACTGGTGACAGC
TGCTTCTGCCCAAAGTGCTTCTAATGTGAGAGCCACGTATCATCTCTACC
ACCCTGAGCAAATTGGATGGGACTTGACGGCAGCGAGCGCTTTCTGCGCA
ACATGGGATGCCAACAAGCCCTTGGCCTGGCGCCAGAAATATGGCTGGAC
TGCTTTCTGTCATTCGGGCGGACCCATTGGACAAGCTGCTTGTGGCAGGT
GCTTAAGGGTCACAAACAGTGGTACAGGAGCCCAACAAATTGTGAG
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