CX306136

Overview
NameCX306136
Unique NameCX306136
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length171
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1346 contig Ccv1_Contig1346:436..606. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX306136 vs. ExPASy Swiss-Prot
Match: PSAEA_NICSY (Photosystem I reaction center subunit IV A, chloroplastic OS=Nicotiana sylvestris GN=PSAEA PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.759e-12
Identity = 32/34 (94.12%), Postives = 33/34 (97.06%), Query Frame = -3
Query:   65 DPKSRYPVVVRFNKVNYANVSTNNYALDEIEEVK 166
            DP +RYPVVVRFNKVNYANVSTNNYALDEIEEVK
Sbjct:  108 DPNTRYPVVVRFNKVNYANVSTNNYALDEIEEVK 141          
BLAST of CX306136 vs. ExPASy Swiss-Prot
Match: PSAEB_NICSY (Photosystem I reaction center subunit IV B, chloroplastic OS=Nicotiana sylvestris GN=PSAEB PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.828e-12
Identity = 31/34 (91.18%), Postives = 33/34 (97.06%), Query Frame = -3
Query:   65 DPKSRYPVVVRFNKVNYANVSTNNYALDEIEEVK 166
            DP +RYPVVVRFNKVNYANVSTNNYALDE+EEVK
Sbjct:  110 DPNTRYPVVVRFNKVNYANVSTNNYALDEVEEVK 143          
BLAST of CX306136 vs. ExPASy Swiss-Prot
Match: PSAE_SPIOL (Photosystem I reaction center subunit IV, chloroplastic OS=Spinacia oleracea GN=PSAE-1 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.506e-11
Identity = 31/33 (93.94%), Postives = 33/33 (100.00%), Query Frame = -3
Query:   68 DPKSRYPVVVRFNKVNYANVSTNNYALDEIEEV 166
            DPK+RYPVVVRFNKVNYANVSTNNYALDEI+EV
Sbjct:   92 DPKTRYPVVVRFNKVNYANVSTNNYALDEIQEV 124          
BLAST of CX306136 vs. ExPASy Swiss-Prot
Match: PSAE2_ARATH (Photosystem I reaction center subunit IV B, chloroplastic OS=Arabidopsis thaliana GN=PSAE2 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.569e-11
Identity = 30/34 (88.24%), Postives = 33/34 (97.06%), Query Frame = -3
Query:   65 DPKSRYPVVVRFNKVNYANVSTNNYALDEIEEVK 166
            DPK+RYPVVVRF KVNYAN+STNNYALDE+EEVK
Sbjct:  112 DPKTRYPVVVRFAKVNYANISTNNYALDEVEEVK 145          
BLAST of CX306136 vs. ExPASy Swiss-Prot
Match: PSAE1_ARATH (Photosystem I reaction center subunit IV A, chloroplastic OS=Arabidopsis thaliana GN=PSAE1 PE=1 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.761e-11
Identity = 29/33 (87.88%), Postives = 32/33 (96.97%), Query Frame = -3
Query:   68 DPKSRYPVVVRFNKVNYANVSTNNYALDEIEEV 166
            DPK+RYPVVVRF KVNYAN+STNNYALDE+EEV
Sbjct:  109 DPKTRYPVVVRFAKVNYANISTNNYALDEVEEV 141          
The following BLAST results are available for this feature:
BLAST of CX306136 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
PSAEA_NICSY6.759e-1294.12Photosystem I reaction center subunit IV A, chloro... [more]
PSAEB_NICSY8.828e-1291.18Photosystem I reaction center subunit IV B, chloro... [more]
PSAE_SPIOL1.506e-1193.94Photosystem I reaction center subunit IV, chloropl... [more]
PSAE2_ARATH2.569e-1188.24Photosystem I reaction center subunit IV B, chloro... [more]
PSAE1_ARATH9.761e-1187.88Photosystem I reaction center subunit IV A, chloro... [more]
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Properties
Property NameValue
Genbank descriptionC18014D09Rv Drought1 Citrus clementina cDNA clone C18014D09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX306136 ID=CX306136; Name=CX306136; organism=Citrus clementina; type=EST; length=171bp
TTTTTTTTTTTTTTTTTTTTTTTAAGAGCGGGGAATAATATGCAAATCAA
AATTACATAACTCATTTAACTTCTTCGATCTCATCCAATGCATAGTTGTT
CGTTGATACATTTGCATAGTTAACCTTGTTGAATCGAACCACAACTGGGT
ACCGACTCTTGGGATCCCCCG
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