CX306162

Overview
NameCX306162
Unique NameCX306162
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length538
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10111 contig Ccv1_Contig10111:527..1064. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX306162 vs. ExPASy Swiss-Prot
Match: ASP_THECC (21 kDa seed protein OS=Theobroma cacao GN=ASP PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 1.430e-26
Identity = 60/132 (45.45%), Postives = 83/132 (62.88%), Query Frame = -3
Query:   75 CPLDVIQLPSAIQWGKKLILSPYDNST-IVRESTDLNLRFVGLLSGSKQCNELPLWKVDNYDASSGRWFITTGGLDGHPGAETLLDWFKLEKTNLPGAYKIVHCPSVCESCVKLCSSVGRFSFEDGVRRLVL 467
            CP  V+Q  S +  G  +I S  D+   +VR STD+N+ FV +    + C+   +W++DNYD S+G+W++TT G+ G PG  TL  WFK+EK  + G YK   CPSVC+SC  LCS +GR S +DG  RL L
Sbjct:   69 CPEIVVQRRSDLDNGTPVIFSNADSKDDVVRVSTDVNIEFVPIRD--RLCSTSTVWRLDNYDNSAGKWWVTTDGVKGEPGPNTLCSWFKIEKAGVLG-YKFRFCPSVCDSCTTLCSDIGRHSDDDGQIRLAL 197          
BLAST of CX306162 vs. ExPASy Swiss-Prot
Match: MIRA_RICDU (Miraculin OS=Richadella dulcifica PE=1 SV=3)

HSP 1 Score: 100.908 bits (250), Expect = 4.030e-21
Identity = 53/138 (38.41%), Postives = 78/138 (56.52%), Query Frame = -3
Query:   57 CPLDVIQLPSAIQWGKKLILSPYD-NSTIVRESTDLNLRFVGLLSGSKQCNELPLWKVDNYDASSGRWFITTGGLDGHPGAETLLDWFKLEKTNLPGAYKIVHCPSVCESCVKLCSSVGRFSFEDGVRRLVLVRDDEP 467
            CP  V+Q    +   + L   P +    +VR STDLN+ F   +    +     +W++D YD S+G++F+T GG+ G+PG ET+  WFK+E+    G YK+V CP+VC SC   C  VG +  + G RRL L   D+P
Sbjct:   76 CPPRVVQTRKEVDHDRPLAFFPENPKEDVVRVSTDLNINFSAFMPC--RWTSSTVWRLDKYDESTGQYFVTIGGVKGNPGPETISSWFKIEEFCGSGFYKLVFCPTVCGSCKVKCGDVGIYIDQKGRRRLAL--SDKP 209          
BLAST of CX306162 vs. ExPASy Swiss-Prot
Match: LSPI_CARPA (Latex serine proteinase inhibitor OS=Carica papaya PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.530e-15
Identity = 56/160 (35.00%), Postives = 79/160 (49.38%), Query Frame = -3
Query:   66 YIVSAIWXXXXXXXXXXXXXXGY-CPLDVIQLPSAIQWGKKLILSPYDN--STIVRESTDLNLRFVGLLSGSKQCNELPLWKVDNYDASSGRWFITTGGLDGHPGAETLLDWFKLEKTNLPGAYKIVHCPSVCESCVKLCSSVGRFSFEDGVRRLVLVRD 536
            ++VSAIW                 CPL V+Q P     G+ +I S   N    IV ES DLN++F   ++    CNE   WKVD +    G W +T GG  G+ G E+    FK++K  LP +YK   CPS   + +  C++V  F  +  +RRL+L  D
Sbjct:   21 FVVSAIWGAGGGGLTVYGPGNKKKCPLSVVQDP--FDNGEPIIFSAIKNVKDNIVFESVDLNVKFNITIN----CNETTAWKVDRFPGVIG-WTVTLGGEKGYHGFESTHSMFKIKKAGLPFSYKFHFCPSYPRTRLIPCNNVDIFFDKYRIRRLILTND 173          
The following BLAST results are available for this feature:
BLAST of CX306162 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
ASP_THECC1.430e-2645.4521 kDa seed protein OS=Theobroma cacao GN=ASP PE=2... [more]
MIRA_RICDU4.030e-2138.41Miraculin OS=Richadella dulcifica PE=1 SV=3[more]
LSPI_CARPA2.530e-1535.00Latex serine proteinase inhibitor OS=Carica papaya... [more]
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Properties
Property NameValue
Genbank descriptionC18014G04Rv Drought1 Citrus clementina cDNA clone C18014G04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX306162 ID=CX306162; Name=CX306162; organism=Citrus clementina; type=EST; length=538bp
ATTGATTACACAGACGTCGATCTTTCTCTAGCTGGAATTAACACAACAGG
AAAAGCCGGCTCATCATCACGAACCAGAACCAGACGTCGAACGCCATCCT
CAAACGAAAAGCGGCCAACGCTGCTGCAGAGTTTGACGCAAGACTCGCAA
ACAGATGGACAATGAACAATTTTGTATGCACCTGGTAGATTAGTTTTCTC
AAGCTTAAACCAATCTAGCAACGTTTCAGCTCCAGGGTGACCATCAAGTC
CCCCGGTTGTTATAAACCATCTGCCTGATGAAGCGTCATAGTTATCAACT
TTCCACAACGGTAGCTCGTTACATTGCTTACTTCCAGATAGTAACCCTAC
GAATCTCAAGTTGAGATCAGTGGATTCTCTGACAATTGTAGAATTGTCAT
ATGGTGACAGTATTAATTTCTTTCCCCATTGGATAGCAGAAGGTAATTGG
ATAACATCCAACGGACAGTATCCGTTTCTGCCTCCGTGTAGGCTAACTCC
ACCGCCGCCAGCTCCCCAGATGGCTGAGACTATGTAGT
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