CX306174
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX306174 vs. ExPASy Swiss-Prot
Match: RL18A_CASSA (60S ribosomal protein L18a OS=Castanea sativa GN=RPL18A PE=2 SV=1) HSP 1 Score: 207.608 bits (527), Expect = 1.569e-53 Identity = 97/105 (92.38%), Postives = 99/105 (94.29%), Query Frame = 1 Query: 85 MVTFRFHQYQVVGRALPTESDEHPTIYRMKLWATNEVRAKSKFWYFLRKLKKVKISNGHMLAINEIFEKNPTKIKNYGFWLRYHSRTGYHNMYKEYRDTTLNGAV 399 MVTFRFHQYQVVGR LP+E+DEHP IYRMKLWATNEVRAKSKFWYFLRKLKKVK SNG MLAINEIFEKNPTKIKNYG WLRY SRTGYHNMYKEYRDTTLNGAV Sbjct: 1 MVTFRFHQYQVVGRGLPSETDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAV 105
BLAST of CX306174 vs. ExPASy Swiss-Prot
Match: RL18A_ORYSJ (60S ribosomal protein L18a OS=Oryza sativa subsp. japonica GN=RPL18A PE=2 SV=1) HSP 1 Score: 198.364 bits (503), Expect = 9.516e-51 Identity = 93/105 (88.57%), Postives = 95/105 (90.48%), Query Frame = 1 Query: 85 MVTFRFHQYQVVGRALPTESDEHPTIYRMKLWATNEVRAKSKFWYFLRKLKKVKISNGHMLAINEIFEKNPTKIKNYGFWLRYHSRTGYHNMYKEYRDTTLNGAV 399 M FRFHQYQVVGR LPT +DEHP IYRMKLWATNEVRAKSKFWYFLRKLKKVK SNG +LAINEIFEKNPT IKNYG WLRY SRTGYHNMYKEYRDTTLNGAV Sbjct: 1 MGAFRFHQYQVVGRGLPTPTDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQILAINEIFEKNPTTIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAV 105
BLAST of CX306174 vs. ExPASy Swiss-Prot
Match: R18A2_ARATH (60S ribosomal protein L18a-2 OS=Arabidopsis thaliana GN=RPL18AB PE=1 SV=2) HSP 1 Score: 194.897 bits (494), Expect = 1.052e-49 Identity = 92/105 (87.62%), Postives = 94/105 (89.52%), Query Frame = 1 Query: 85 MVTFRFHQYQVVGRALPTESDEHPTIYRMKLWATNEVRAKSKFWYFLRKLKKVKISNGHMLAINEIFEKNPTKIKNYGFWLRYHSRTGYHNMYKEYRDTTLNGAV 399 M FRFHQYQVVGRALPTE D P IYRMKLWATNEVRAKSKFWYFLRKLKKVK SNG MLAINEI+EKNPT IKN+G WLRY SRTGYHNMYKEYRDTTLNGAV Sbjct: 1 MGAFRFHQYQVVGRALPTEKDVQPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIYEKNPTTIKNFGIWLRYQSRTGYHNMYKEYRDTTLNGAV 105
BLAST of CX306174 vs. ExPASy Swiss-Prot
Match: R18A3_ARATH (60S ribosomal protein L18a-3 OS=Arabidopsis thaliana GN=RPL18AC PE=2 SV=1) HSP 1 Score: 193.741 bits (491), Expect = 2.344e-49 Identity = 90/102 (88.24%), Postives = 92/102 (90.20%), Query Frame = 1 Query: 94 FRFHQYQVVGRALPTESDEHPTIYRMKLWATNEVRAKSKFWYFLRKLKKVKISNGHMLAINEIFEKNPTKIKNYGFWLRYHSRTGYHNMYKEYRDTTLNGAV 399 FRFHQYQVVGRALPTE+DEHP IYRMKLW NEV AKSKFWYF+RKLKKVK SNG MLAINEIFEKNPT IKNYG WLRY SRTGYHNMYKEYRDTTLNG V Sbjct: 4 FRFHQYQVVGRALPTENDEHPKIYRMKLWGRNEVCAKSKFWYFMRKLKKVKKSNGQMLAINEIFEKNPTTIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGGV 105
BLAST of CX306174 vs. ExPASy Swiss-Prot
Match: RL18A_CAEEL (60S ribosomal protein L18a OS=Caenorhabditis elegans GN=rpl-20 PE=2 SV=2) HSP 1 Score: 132.109 bits (331), Expect = 8.375e-31 Identity = 57/99 (57.58%), Postives = 80/99 (80.81%), Query Frame = 1 Query: 103 HQYQVVGRALPTESDEHPTIYRMKLWATNEVRAKSKFWYFLRKLKKVKISNGHMLAINEIFEKNPTKIKNYGFWLRYHSRTGYHNMYKEYRDTTLNGAV 399 ++Y VVGR +PTE + I++M+++ATN V AKS+FWYF+ L++VK +NG +L+I ++FEKNP +KNYG WL+Y SRTG+HNMY+EYRDTT+ GAV Sbjct: 11 NEYVVVGRKIPTEKEPVTPIWKMQIFATNHVIAKSRFWYFVSMLRRVKKANGEILSIKQVFEKNPGTVKNYGVWLKYDSRTGHHNMYREYRDTTVAGAV 109
BLAST of CX306174 vs. ExPASy Swiss-Prot
Match: RL18A_SPOFR (60S ribosomal protein L18a OS=Spodoptera frugiperda GN=RpL18A PE=2 SV=1) HSP 1 Score: 129.028 bits (323), Expect = 7.090e-30 Identity = 54/98 (55.10%), Postives = 80/98 (81.63%), Query Frame = 1 Query: 106 QYQVVGRALPTESDEHPTIYRMKLWATNEVRAKSKFWYFLRKLKKVKISNGHMLAINEIFEKNPTKIKNYGFWLRYHSRTGYHNMYKEYRDTTLNGAV 399 +Y+V+GR LP+ES+ P +Y+M++++ +++ AKS+FWYFLR+LKK K + G +++I EI EK+P KIKN+G WLRY SR+G HNMY+EYRD ++ GAV Sbjct: 9 EYEVIGRKLPSESEPKPPLYKMRIFSPDQIVAKSRFWYFLRQLKKFKKTTGEIVSIREIPEKSPVKIKNFGIWLRYESRSGVHNMYREYRDLSVGGAV 106
BLAST of CX306174 vs. ExPASy Swiss-Prot
Match: RL20_YEAST (60S ribosomal protein L20 OS=Saccharomyces cerevisiae GN=RPL20A PE=1 SV=2) HSP 1 Score: 128.257 bits (321), Expect = 1.209e-29 Identity = 57/100 (57.00%), Postives = 80/100 (80.00%), Query Frame = 1 Query: 100 FHQYQVVGRALPTESDEHPTIYRMKLWATNEVRAKSKFWYFLRKLKKVKISNGHMLAINEIFEKNPTKIKNYGFWLRYHSRTGYHNMYKEYRDTTLNGAV 399 F +YQV+GR LPTES P ++RM+++A+NEV AKS++WYFL+KL KVK ++G +++IN+I E +PTK+KN+G W+RY SR+G HNMYKE RD + AV Sbjct: 4 FKEYQVIGRRLPTESVPEPKLFRMRIFASNEVIAKSRYWYFLQKLHKVKKASGEIVSINQINEAHPTKVKNFGVWVRYDSRSGTHNMYKEIRDVSRVAAV 103
BLAST of CX306174 vs. ExPASy Swiss-Prot
Match: RL18A_DICDI (60S ribosomal protein L18a OS=Dictyostelium discoideum GN=rpl18a PE=3 SV=2) HSP 1 Score: 127.872 bits (320), Expect = 1.579e-29 Identity = 57/99 (57.58%), Postives = 76/99 (76.77%), Query Frame = 1 Query: 103 HQYQVVGRALPTESDEHPTIYRMKLWATNEVRAKSKFWYFLRKLKKVKISNGHMLAINEIFEKNPTKIKNYGFWLRYHSRTGYHNMYKEYRDTTLNGAV 399 H++QVVGR +PTE D +P IYRM+L+A + AKS+FWYFL K+ K+K S G +L + EIFE P K+KN+G ++RY+SR+G HN+YKEYRD T GAV Sbjct: 4 HEFQVVGRHVPTERDANPKIYRMRLFAQTSIHAKSRFWYFLSKIVKMKKSTGEILNVTEIFEDKPQKVKNFGVFIRYNSRSGTHNIYKEYRDLTRCGAV 102
BLAST of CX306174 vs. ExPASy Swiss-Prot
Match: RL18A_DROME (60S ribosomal protein L18a OS=Drosophila melanogaster GN=RpL18A PE=1 SV=1) HSP 1 Score: 125.176 bits (313), Expect = 1.024e-28 Identity = 52/98 (53.06%), Postives = 77/98 (78.57%), Query Frame = 1 Query: 106 QYQVVGRALPTESDEHPTIYRMKLWATNEVRAKSKFWYFLRKLKKVKISNGHMLAINEIFEKNPTKIKNYGFWLRYHSRTGYHNMYKEYRDTTLNGAV 399 +Y+VVGR LP+E + +Y+M+++A + + AKS+FWYFLR+LKK K + G +++I +++E +P KIKN+G WLRY SR+G HNMY+EYRD T+ GAV Sbjct: 9 EYEVVGRKLPSEKEPQTPLYKMRIFAPDNIVAKSRFWYFLRQLKKFKKTTGEIVSIKQVYETSPVKIKNFGIWLRYDSRSGTHNMYREYRDLTVGGAV 106
BLAST of CX306174 vs. ExPASy Swiss-Prot
Match: RL18A_RAT (60S ribosomal protein L18a OS=Rattus norvegicus GN=Rpl18a PE=2 SV=1) HSP 1 Score: 124.405 bits (311), Expect = 1.746e-28 Identity = 54/98 (55.10%), Postives = 75/98 (76.53%), Query Frame = 1 Query: 106 QYQVVGRALPTESDEHPTIYRMKLWATNEVRAKSKFWYFLRKLKKVKISNGHMLAINEIFEKNPTKIKNYGFWLRYHSRTGYHNMYKEYRDTTLNGAV 399 +Y+VVGR LPT P +YRM+++A N V AKS+FWYF+ +LKK+K S+G ++ ++FEK+P ++KN+G WLRY SR+G HNMY+EYRD T GAV Sbjct: 9 EYKVVGRCLPTPKCHTPPLYRMRIFAPNHVVAKSRFWYFVSQLKKMKKSSGEIVYCGQVFEKSPLRVKNFGIWLRYDSRSGTHNMYREYRDLTTAGAV 106 The following BLAST results are available for this feature:
BLAST of CX306174 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 17
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Sequences
The
following sequences are available for this feature:
EST sequence >CX306174 ID=CX306174; Name=CX306174; organism=Citrus clementina; type=EST; length=400bpback to top |