CX306174

Overview
NameCX306174
Unique NameCX306174
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length400
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX306174_ssr22 microsatellite CX306174_ssr22:22..41. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14817 contig Ccv1_Contig14817:1..389. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX306174 vs. ExPASy Swiss-Prot
Match: RL18A_CASSA (60S ribosomal protein L18a OS=Castanea sativa GN=RPL18A PE=2 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 1.569e-53
Identity = 97/105 (92.38%), Postives = 99/105 (94.29%), Query Frame = 1
Query:   85 MVTFRFHQYQVVGRALPTESDEHPTIYRMKLWATNEVRAKSKFWYFLRKLKKVKISNGHMLAINEIFEKNPTKIKNYGFWLRYHSRTGYHNMYKEYRDTTLNGAV 399
            MVTFRFHQYQVVGR LP+E+DEHP IYRMKLWATNEVRAKSKFWYFLRKLKKVK SNG MLAINEIFEKNPTKIKNYG WLRY SRTGYHNMYKEYRDTTLNGAV
Sbjct:    1 MVTFRFHQYQVVGRGLPSETDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAV 105          
BLAST of CX306174 vs. ExPASy Swiss-Prot
Match: RL18A_ORYSJ (60S ribosomal protein L18a OS=Oryza sativa subsp. japonica GN=RPL18A PE=2 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 9.516e-51
Identity = 93/105 (88.57%), Postives = 95/105 (90.48%), Query Frame = 1
Query:   85 MVTFRFHQYQVVGRALPTESDEHPTIYRMKLWATNEVRAKSKFWYFLRKLKKVKISNGHMLAINEIFEKNPTKIKNYGFWLRYHSRTGYHNMYKEYRDTTLNGAV 399
            M  FRFHQYQVVGR LPT +DEHP IYRMKLWATNEVRAKSKFWYFLRKLKKVK SNG +LAINEIFEKNPT IKNYG WLRY SRTGYHNMYKEYRDTTLNGAV
Sbjct:    1 MGAFRFHQYQVVGRGLPTPTDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQILAINEIFEKNPTTIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAV 105          
BLAST of CX306174 vs. ExPASy Swiss-Prot
Match: R18A2_ARATH (60S ribosomal protein L18a-2 OS=Arabidopsis thaliana GN=RPL18AB PE=1 SV=2)

HSP 1 Score: 194.897 bits (494), Expect = 1.052e-49
Identity = 92/105 (87.62%), Postives = 94/105 (89.52%), Query Frame = 1
Query:   85 MVTFRFHQYQVVGRALPTESDEHPTIYRMKLWATNEVRAKSKFWYFLRKLKKVKISNGHMLAINEIFEKNPTKIKNYGFWLRYHSRTGYHNMYKEYRDTTLNGAV 399
            M  FRFHQYQVVGRALPTE D  P IYRMKLWATNEVRAKSKFWYFLRKLKKVK SNG MLAINEI+EKNPT IKN+G WLRY SRTGYHNMYKEYRDTTLNGAV
Sbjct:    1 MGAFRFHQYQVVGRALPTEKDVQPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIYEKNPTTIKNFGIWLRYQSRTGYHNMYKEYRDTTLNGAV 105          
BLAST of CX306174 vs. ExPASy Swiss-Prot
Match: R18A3_ARATH (60S ribosomal protein L18a-3 OS=Arabidopsis thaliana GN=RPL18AC PE=2 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 2.344e-49
Identity = 90/102 (88.24%), Postives = 92/102 (90.20%), Query Frame = 1
Query:   94 FRFHQYQVVGRALPTESDEHPTIYRMKLWATNEVRAKSKFWYFLRKLKKVKISNGHMLAINEIFEKNPTKIKNYGFWLRYHSRTGYHNMYKEYRDTTLNGAV 399
            FRFHQYQVVGRALPTE+DEHP IYRMKLW  NEV AKSKFWYF+RKLKKVK SNG MLAINEIFEKNPT IKNYG WLRY SRTGYHNMYKEYRDTTLNG V
Sbjct:    4 FRFHQYQVVGRALPTENDEHPKIYRMKLWGRNEVCAKSKFWYFMRKLKKVKKSNGQMLAINEIFEKNPTTIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGGV 105          
BLAST of CX306174 vs. ExPASy Swiss-Prot
Match: RL18A_CAEEL (60S ribosomal protein L18a OS=Caenorhabditis elegans GN=rpl-20 PE=2 SV=2)

HSP 1 Score: 132.109 bits (331), Expect = 8.375e-31
Identity = 57/99 (57.58%), Postives = 80/99 (80.81%), Query Frame = 1
Query:  103 HQYQVVGRALPTESDEHPTIYRMKLWATNEVRAKSKFWYFLRKLKKVKISNGHMLAINEIFEKNPTKIKNYGFWLRYHSRTGYHNMYKEYRDTTLNGAV 399
            ++Y VVGR +PTE +    I++M+++ATN V AKS+FWYF+  L++VK +NG +L+I ++FEKNP  +KNYG WL+Y SRTG+HNMY+EYRDTT+ GAV
Sbjct:   11 NEYVVVGRKIPTEKEPVTPIWKMQIFATNHVIAKSRFWYFVSMLRRVKKANGEILSIKQVFEKNPGTVKNYGVWLKYDSRTGHHNMYREYRDTTVAGAV 109          
BLAST of CX306174 vs. ExPASy Swiss-Prot
Match: RL18A_SPOFR (60S ribosomal protein L18a OS=Spodoptera frugiperda GN=RpL18A PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 7.090e-30
Identity = 54/98 (55.10%), Postives = 80/98 (81.63%), Query Frame = 1
Query:  106 QYQVVGRALPTESDEHPTIYRMKLWATNEVRAKSKFWYFLRKLKKVKISNGHMLAINEIFEKNPTKIKNYGFWLRYHSRTGYHNMYKEYRDTTLNGAV 399
            +Y+V+GR LP+ES+  P +Y+M++++ +++ AKS+FWYFLR+LKK K + G +++I EI EK+P KIKN+G WLRY SR+G HNMY+EYRD ++ GAV
Sbjct:    9 EYEVIGRKLPSESEPKPPLYKMRIFSPDQIVAKSRFWYFLRQLKKFKKTTGEIVSIREIPEKSPVKIKNFGIWLRYESRSGVHNMYREYRDLSVGGAV 106          
BLAST of CX306174 vs. ExPASy Swiss-Prot
Match: RL20_YEAST (60S ribosomal protein L20 OS=Saccharomyces cerevisiae GN=RPL20A PE=1 SV=2)

HSP 1 Score: 128.257 bits (321), Expect = 1.209e-29
Identity = 57/100 (57.00%), Postives = 80/100 (80.00%), Query Frame = 1
Query:  100 FHQYQVVGRALPTESDEHPTIYRMKLWATNEVRAKSKFWYFLRKLKKVKISNGHMLAINEIFEKNPTKIKNYGFWLRYHSRTGYHNMYKEYRDTTLNGAV 399
            F +YQV+GR LPTES   P ++RM+++A+NEV AKS++WYFL+KL KVK ++G +++IN+I E +PTK+KN+G W+RY SR+G HNMYKE RD +   AV
Sbjct:    4 FKEYQVIGRRLPTESVPEPKLFRMRIFASNEVIAKSRYWYFLQKLHKVKKASGEIVSINQINEAHPTKVKNFGVWVRYDSRSGTHNMYKEIRDVSRVAAV 103          
BLAST of CX306174 vs. ExPASy Swiss-Prot
Match: RL18A_DICDI (60S ribosomal protein L18a OS=Dictyostelium discoideum GN=rpl18a PE=3 SV=2)

HSP 1 Score: 127.872 bits (320), Expect = 1.579e-29
Identity = 57/99 (57.58%), Postives = 76/99 (76.77%), Query Frame = 1
Query:  103 HQYQVVGRALPTESDEHPTIYRMKLWATNEVRAKSKFWYFLRKLKKVKISNGHMLAINEIFEKNPTKIKNYGFWLRYHSRTGYHNMYKEYRDTTLNGAV 399
            H++QVVGR +PTE D +P IYRM+L+A   + AKS+FWYFL K+ K+K S G +L + EIFE  P K+KN+G ++RY+SR+G HN+YKEYRD T  GAV
Sbjct:    4 HEFQVVGRHVPTERDANPKIYRMRLFAQTSIHAKSRFWYFLSKIVKMKKSTGEILNVTEIFEDKPQKVKNFGVFIRYNSRSGTHNIYKEYRDLTRCGAV 102          
BLAST of CX306174 vs. ExPASy Swiss-Prot
Match: RL18A_DROME (60S ribosomal protein L18a OS=Drosophila melanogaster GN=RpL18A PE=1 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 1.024e-28
Identity = 52/98 (53.06%), Postives = 77/98 (78.57%), Query Frame = 1
Query:  106 QYQVVGRALPTESDEHPTIYRMKLWATNEVRAKSKFWYFLRKLKKVKISNGHMLAINEIFEKNPTKIKNYGFWLRYHSRTGYHNMYKEYRDTTLNGAV 399
            +Y+VVGR LP+E +    +Y+M+++A + + AKS+FWYFLR+LKK K + G +++I +++E +P KIKN+G WLRY SR+G HNMY+EYRD T+ GAV
Sbjct:    9 EYEVVGRKLPSEKEPQTPLYKMRIFAPDNIVAKSRFWYFLRQLKKFKKTTGEIVSIKQVYETSPVKIKNFGIWLRYDSRSGTHNMYREYRDLTVGGAV 106          
BLAST of CX306174 vs. ExPASy Swiss-Prot
Match: RL18A_RAT (60S ribosomal protein L18a OS=Rattus norvegicus GN=Rpl18a PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 1.746e-28
Identity = 54/98 (55.10%), Postives = 75/98 (76.53%), Query Frame = 1
Query:  106 QYQVVGRALPTESDEHPTIYRMKLWATNEVRAKSKFWYFLRKLKKVKISNGHMLAINEIFEKNPTKIKNYGFWLRYHSRTGYHNMYKEYRDTTLNGAV 399
            +Y+VVGR LPT     P +YRM+++A N V AKS+FWYF+ +LKK+K S+G ++   ++FEK+P ++KN+G WLRY SR+G HNMY+EYRD T  GAV
Sbjct:    9 EYKVVGRCLPTPKCHTPPLYRMRIFAPNHVVAKSRFWYFVSQLKKMKKSSGEIVYCGQVFEKSPLRVKNFGIWLRYDSRSGTHNMYREYRDLTTAGAV 106          
The following BLAST results are available for this feature:
BLAST of CX306174 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
RL18A_CASSA1.569e-5392.3860S ribosomal protein L18a OS=Castanea sativa GN=R... [more]
RL18A_ORYSJ9.516e-5188.5760S ribosomal protein L18a OS=Oryza sativa subsp. ... [more]
R18A2_ARATH1.052e-4987.6260S ribosomal protein L18a-2 OS=Arabidopsis thalia... [more]
R18A3_ARATH2.344e-4988.2460S ribosomal protein L18a-3 OS=Arabidopsis thalia... [more]
RL18A_CAEEL8.375e-3157.5860S ribosomal protein L18a OS=Caenorhabditis elega... [more]
RL18A_SPOFR7.090e-3055.1060S ribosomal protein L18a OS=Spodoptera frugiperd... [more]
RL20_YEAST1.209e-2957.0060S ribosomal protein L20 OS=Saccharomyces cerevis... [more]
RL18A_DICDI1.579e-2957.5860S ribosomal protein L18a OS=Dictyostelium discoi... [more]
RL18A_DROME1.024e-2853.0660S ribosomal protein L18a OS=Drosophila melanogas... [more]
RL18A_RAT1.746e-2855.1060S ribosomal protein L18a OS=Rattus norvegicus GN... [more]

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Properties
Property NameValue
Genbank descriptionC18014H09Rv Drought1 Citrus clementina cDNA clone C18014H09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX306174 ID=CX306174; Name=CX306174; organism=Citrus clementina; type=EST; length=400bp
TCGGGCTCCACAACAGAGAGTGAGAGAGAGAGAGAGAGAGATAGTTACGC
TGCGGAGATCGTCACATCTTGTATTTCCTCAAAAATGGTCACTTTCAGGT
TTCACCAGTATCAGGTTGTTGGGAGAGCTCTTCCAACTGAGTCCGATGAG
CATCCTACGATTTACAGGATGAAGTTGTGGGCCACGAATGAGGTTCGAGC
CAAGTCCAAGTTCTGGTACTTTCTTAGAAAGCTCAAGAAGGTCAAGATAA
GTAATGGTCACATGCTTGCCATTAACGAGATTTTTGAGAAGAACCCAACC
AAGATCAAGAACTATGGCTTCTGGTTGCGTTATCACAGTCGAACTGGTTA
TCACAATATGTACAAGGAGTACCGTGATACCACTCTGAACGGGGCTGTGG
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