CX306340

Overview
NameCX306340
Unique NameCX306340
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length587
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig886 contig Ccv1_Contig886:140..726. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX306340 vs. ExPASy Swiss-Prot
Match: ASP_THECC (21 kDa seed protein OS=Theobroma cacao GN=ASP PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 3.154e-20
Identity = 60/171 (35.09%), Postives = 93/171 (54.39%), Query Frame = 3
Query:    9 GNKVKSTLEYKLIPVLDGAGGFSTHLG--TNGQCPLDVIQLSSPSERGDNLRLLPYDNYK-IVKVSTDVNLRFPVKVSVKPCNEEPLWKVDSYDDPL----IVTGGSEGHPGAETLLNWFKIEKAGNFSYGGVYNIVHCPSVCLSCPRRCNKIGVSTKDGVRRLLLVGDHE 500
            G+++++ ++Y ++  + GAGG    LG  T   CP  V+Q  S  + G  +     D+   +V+VSTDVN+ F V +  + C+   +W++D+YD+      + T G +G PG  TL +WFKIEKAG       Y    CPSVC SC   C+ IG  + D  +  L + D+E
Sbjct:   36 GDELQTGVQYYVLSSISGAGGGGLALGRATGQSCPEIVVQRRSDLDNGTPVIFSNADSKDDVVRVSTDVNIEF-VPIRDRLCSTSTVWRLDNYDNSAGKWWVTTDGVKGEPGPNTLCSWFKIEKAGVLG----YKFRFCPSVCDSCTTLCSDIGRHSDDDGQIRLALSDNE 201          
BLAST of CX306340 vs. ExPASy Swiss-Prot
Match: MIRA_RICDU (Miraculin OS=Richadella dulcifica PE=1 SV=3)

HSP 1 Score: 94.7449 bits (234), Expect = 3.487e-19
Identity = 61/174 (35.06%), Postives = 90/174 (51.72%), Query Frame = 3
Query:    9 GNKVKSTLEYKLIPVLDGAGGFSTHLGT--NGQ--CPLDVIQLSSPSERGDNLRLLPYDNYK--IVKVSTDVNLRFPVKVSVKPCN--EEPLWKVDSYDDP----LIVTGGSEGHPGAETLLNWFKIEKAGNFSYGGVYNIVHCPSVCLSCPRRCNKIGVSTKDGVRRLLLVGD 494
            G K+++   Y ++PVL   GG  T   T  NG   CP  V+Q     +    L   P +N K  +V+VSTD+N+ F    +  PC      +W++D YD+      +  GG +G+PG ET+ +WFKIE+   F   G Y +V CP+VC SC  +C  +G+      RR L + D
Sbjct:   41 GEKLRTGTNYYIVPVLRDHGGGLTVSATTPNGTFVCPPRVVQTRKEVDHDRPLAFFP-ENPKEDVVRVSTDLNINFS---AFMPCRWTSSTVWRLDKYDESTGQYFVTIGGVKGNPGPETISSWFKIEE---FCGSGFYKLVFCPTVCGSCKVKCGDVGIYIDQKGRRRLALSD 207          
BLAST of CX306340 vs. ExPASy Swiss-Prot
Match: LSPI_CARPA (Latex serine proteinase inhibitor OS=Carica papaya PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 9.198e-12
Identity = 55/172 (31.98%), Postives = 85/172 (49.42%), Query Frame = 3
Query:    9 GNKVKSTLEYKLIPVLDGAGGFSTHL---GTNGQCPLDVIQLSSPSERGDNLRLLPYDNYK--IVKVSTDVNLRFPVKVSVKPCNEEPLWKVDSYDDPL---IVTGGSEGHPGAETLLNWFKIEKAG-NFSYGGVYNIVHCPSVCLSCPRRCNKIGV-STKDGVRRLLLVGD 494
            G  V   ++Y ++  + GAGG    +   G   +CPL V+Q   P + G+ +      N K  IV  S D+N++F + ++   CNE   WKVD +   +   +  GG +G+ G E+  + FKI+KAG  FS    Y    CPS   +    CN + +   K  +RRL+L  D
Sbjct:   11 GKPVLYGVDYFVVSAIWGAGGGGLTVYGPGNKKKCPLSVVQ--DPFDNGEPIIFSAIKNVKDNIVFESVDLNVKFNITIN---CNETTAWKVDRFPGVIGWTVTLGGEKGYHGFESTHSMFKIKKAGLPFS----YKFHFCPSYPRTRLIPCNNVDIFFDKYRIRRLILTND 173          
The following BLAST results are available for this feature:
BLAST of CX306340 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
ASP_THECC3.154e-2035.0921 kDa seed protein OS=Theobroma cacao GN=ASP PE=2... [more]
MIRA_RICDU3.487e-1935.06Miraculin OS=Richadella dulcifica PE=1 SV=3[more]
LSPI_CARPA9.198e-1231.98Latex serine proteinase inhibitor OS=Carica papaya... [more]
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Properties
Property NameValue
Genbank descriptionC18017A02Rv Drought1 Citrus clementina cDNA clone C18017A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX306340 ID=CX306340; Name=CX306340; organism=Citrus clementina; type=EST; length=587bp
GCGGGATTGGCAACAAGGTCAAATCCACCCTCGAGTATAAACTTATCCCA
GTCCTAGATGGCGCCGGTGGATTCAGCACACACCTAGGCACAAATGGACA
GTGTCCCTTGGACGTTATCCAATTAAGTTCTCCTAGCGAAAGGGGAGATA
ATTTAAGATTACTTCCGTACGACAATTACAAAATTGTCAAGGTATCCACT
GATGTCAACCTGAGATTCCCCGTAAAAGTTTCTGTTAAGCCCTGTAATGA
AGAACCATTGTGGAAAGTTGATAGCTATGACGATCCATTAATTGTAACCG
GCGGAAGTGAGGGCCACCCGGGAGCTGAAACGTTGCTAAATTGGTTTAAG
ATTGAGAAAGCTGGAAATTTTTCATATGGTGGTGTATACAATATTGTCCA
TTGTCCGAGTGTCTGTCTATCTTGTCCTAGACGCTGCAACAAAATTGGCG
TTTCAACTAAGGATGGCGTTCGACGTCTGCTTCTAGTTGGTGATCATGAA
CCGGCTTTGAATGTTCTGTTTTTTCCATCAGAGGAAAGCTCAAGGCTACT
TCAAGCTGCTAAACGCATATCAAGGTTTTTTTGAGCT
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