CX306347
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX306347 vs. ExPASy Swiss-Prot
Match: RGLG2_ARATH (E3 ubiquitin-protein ligase RGLG2 OS=Arabidopsis thaliana GN=RGLG2 PE=1 SV=1) HSP 1 Score: 320.472 bits (820), Expect = 3.737e-87 Identity = 159/188 (84.57%), Postives = 173/188 (92.02%), Query Frame = 2 Query: 8 IADDYKSLDQVTEALARAGLESSNLVVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAVFDEDNLIPCYGFGDASTHDQDVSSFYSGGRFCYGFEEVLSRYREIVPNLKLAGPTSFAPVIEMAMSIVEQSGGQYHVLLIIADGQVTRSVDTVRGCLSPQEQKTVDAIVKASELPLS 571 I+DDY SL+QVTEALARAGLESSNL+VGIDFTKSNEWTG RSFNR+SLH+IG NPYEQAI+IIG+TLA FDEDNLIPCYGFGDASTHDQDV SF S RFC GFEEVLSRY+EIVP LKLAGPTSFAP+I+MAM+IVEQSGGQYHVL+IIADGQVTRSVDT G LSPQEQKTVDAIV+AS+LPLS Sbjct: 99 ISDDYSSLEQVTEALARAGLESSNLIVGIDFTKSNEWTGARSFNRKSLHFIGSSPNPYEQAITIIGRTLAAFDEDNLIPCYGFGDASTHDQDVFSFNSEDRFCNGFEEVLSRYKEIVPQLKLAGPTSFAPIIDMAMTIVEQSGGQYHVLVIIADGQVTRSVDTENGQLSPQEQKTVDAIVQASKLPLS 286
BLAST of CX306347 vs. ExPASy Swiss-Prot
Match: RGLG1_ARATH (E3 ubiquitin-protein ligase RGLG1 OS=Arabidopsis thaliana GN=RGLG1 PE=1 SV=1) HSP 1 Score: 311.612 bits (797), Expect = 1.736e-84 Identity = 154/188 (81.91%), Postives = 170/188 (90.43%), Query Frame = 2 Query: 8 IADDYKSLDQVTEALARAGLESSNLVVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAVFDEDNLIPCYGFGDASTHDQDVSSFYSGGRFCYGFEEVLSRYREIVPNLKLAGPTSFAPVIEMAMSIVEQSGGQYHVLLIIADGQVTRSVDTVRGCLSPQEQKTVDAIVKASELPLS 571 I+D+Y SL QV+EAL RAGLESSNL+VGIDFTKSNEWTG +SFNR+SLH++ + NPYEQAI+IIG+TLA FDEDNLIPCYGFGDASTHDQDV SFY GRFC GFEEVL+RYREIVP LKLAGPTSFAP+IEMAM++VEQS GQYHVL+IIADGQVTRSVDT G LSPQEQKTVDAIVKAS LPLS Sbjct: 133 ISDNYSSLLQVSEALGRAGLESSNLIVGIDFTKSNEWTGAKSFNRKSLHHLSNTPNPYEQAITIIGRTLAAFDEDNLIPCYGFGDASTHDQDVFSFYPEGRFCNGFEEVLARYREIVPQLKLAGPTSFAPIIEMAMTVVEQSSGQYHVLVIIADGQVTRSVDTEHGRLSPQEQKTVDAIVKASTLPLS 320
BLAST of CX306347 vs. ExPASy Swiss-Prot
Match: CPNA2_CAEEL (Copine domain-containing protein 2 OS=Caenorhabditis elegans GN=cpna-2 PE=2 SV=3) HSP 1 Score: 155.221 bits (391), Expect = 2.079e-37 Identity = 83/188 (44.15%), Postives = 118/188 (62.77%), Query Frame = 2 Query: 20 YKSLDQVTEALARAGLESSNLVVGIDFTKSNEWTGKRSFNRRSLHYIGDG-LNPYEQAISIIGKTLAVFDEDNLIPCYGFGDASTHDQ---DVSSFYSGGRFCYGFEEVLSRYREIVPNLKLAGPTSFAPVIEMAMSIVEQSGGQYHVLLIIADGQVTRSVDTVRGCLSPQEQKTVDAIVKASELPLS 571 +K+LD + +A+ AGLE SNL+ GID+TKSN + G+R+F++R LH I +NPY+Q I I+GKTL+ FD D IP YGFGD D +++ Y + C GFEEVL Y E+ P ++++GPT+F P+I+ A+ I ++ YH+L+I+ADGQVT E+ AI AS PLS Sbjct: 7299 FKTLDDIVKAIKHAGLEYSNLIFGIDYTKSNFYQGERTFDKRPLHTIDPAEMNPYQQVIQIVGKTLSSFDADGQIPAYGFGDEEFTDHGIFNIAERYDLEKDCNGFEEVLRVYNEVTPTIEMSGPTNFVPLIDRAIEICKEK-HSYHILVIVADGQVT------------NEKINQKAIAAASHYPLS 7473
BLAST of CX306347 vs. ExPASy Swiss-Prot
Match: CPNE1_MOUSE (Copine-1 OS=Mus musculus GN=Cpne1 PE=1 SV=1) HSP 1 Score: 95.1301 bits (235), Expect = 2.553e-19 Identity = 62/176 (35.23%), Postives = 91/176 (51.70%), Query Frame = 2 Query: 77 NLVVGIDFTKSNEWTGKRSFNRRSLHYIGD-GLNPYEQAISIIGKTLAVFDEDNLIPCYGFGDASTHDQDVS-----SFYSGGRFCYGFEEVLSRYREIVPNLKLAGPTSFAPVIE-----MAMSIVEQSGGQYHVLLIIADGQVTRSVDTVRGCLSPQEQKTVDAIVKASELPLS 571 N VG+DFT SN G S + SLHY+ G+N Y A+ +G + +D D L P +GFG D VS +F +C G + ++ YR+ +P ++L GPT+FAP+I A + ++S QY VLL++ DG VT + T A+V AS+LP+S Sbjct: 284 NFTVGVDFTGSN---GDPS-SPDSLHYLSPTGVNEYLTALWSVGSVVQDYDSDKLFPAFGFGAQVPPDWQVSHEFALNFNPSNPYCAGIQGIVDAYRQALPQVRLYGPTNFAPIINHVARFAAQAAQQRSASQYFVLLLLTDGAVT------------DVEATCKAVVDASKLPMS 443
BLAST of CX306347 vs. ExPASy Swiss-Prot
Match: CPNE3_PONAB (Copine-3 OS=Pongo abelii GN=CPNE3 PE=2 SV=1) HSP 1 Score: 93.5893 bits (231), Expect = 7.429e-19 Identity = 63/176 (35.80%), Postives = 90/176 (51.14%), Query Frame = 2 Query: 77 NLVVGIDFTKSNEWTGKRSFNRRSLHYIG-DGLNPYEQAISIIGKTLAVFDEDNLIPCYGFGDASTHDQDVS-----SFYSGGRFCYGFEEVLSRYREIVPNLKLAGPTSFAPVIE-----MAMSIVEQSGGQYHVLLIIADGQVTRSVDTVRGCLSPQEQKTVDAIVKASELPLS 571 N VG+DFT SN+ RS + SLHYI +G+N Y A+ +G + +D D + P +GFG VS +F +C G + ++ YR +P +KL GPT+F+P+I A + +Q+ QY VLLII DG +T +T AIV AS LP+S Sbjct: 291 NFTVGVDFTGSND--DPRSPD--SLHYISPNGVNEYLTALWSVGLVIQDYDADKMFPAFGFGAQIPPQWQVSHEFPMNFNPSNPYCNGIQGIVEAYRSCLPQIKLYGPTNFSPIINHVARFAAAAAQQQTASQYFVLLIITDGVIT------------DLDETRQAIVNASRLPMS 450
BLAST of CX306347 vs. ExPASy Swiss-Prot
Match: CPNE1_HUMAN (Copine-1 OS=Homo sapiens GN=CPNE1 PE=1 SV=1) HSP 1 Score: 92.8189 bits (229), Expect = 1.267e-18 Identity = 60/176 (34.09%), Postives = 91/176 (51.70%), Query Frame = 2 Query: 77 NLVVGIDFTKSNEWTGKRSFNRRSLHYIGD-GLNPYEQAISIIGKTLAVFDEDNLIPCYGFGDASTHDQDVS-----SFYSGGRFCYGFEEVLSRYREIVPNLKLAGPTSFAPVIE-----MAMSIVEQSGGQYHVLLIIADGQVTRSVDTVRGCLSPQEQKTVDAIVKASELPLS 571 N VG+DFT SN G S + SLHY+ G+N Y A+ +G + +D D L P +GFG D VS +F +C G + ++ YR+ +P ++L GPT+FAP+I A + + + QY +LL++ DG VT + T +A+V+AS LP+S Sbjct: 285 NFTVGVDFTGSN---GDPS-SPDSLHYLSPTGVNEYLMALWSVGSVVQDYDSDKLFPAFGFGAQVPPDWQVSHEFALNFNPSNPYCAGIQGIVDAYRQALPQVRLYGPTNFAPIINHVARFAAQAAHQGTASQYFMLLLLTDGAVT------------DVEATREAVVRASNLPMS 444
BLAST of CX306347 vs. ExPASy Swiss-Prot
Match: CPNE3_HUMAN (Copine-3 OS=Homo sapiens GN=CPNE3 PE=1 SV=1) HSP 1 Score: 92.0485 bits (227), Expect = 2.162e-18 Identity = 63/176 (35.80%), Postives = 89/176 (50.57%), Query Frame = 2 Query: 77 NLVVGIDFTKSNEWTGKRSFNRRSLHYIG-DGLNPYEQAISIIGKTLAVFDEDNLIPCYGFGDASTHDQDVS-----SFYSGGRFCYGFEEVLSRYREIVPNLKLAGPTSFAPVIE-----MAMSIVEQSGGQYHVLLIIADGQVTRSVDTVRGCLSPQEQKTVDAIVKASELPLS 571 N VG+DFT SN RS + SLHYI +G+N Y A+ +G + +D D + P +GFG VS +F +C G + ++ YR +P +KL GPT+F+P+I A + +Q+ QY VLLII DG +T +T AIV AS LP+S Sbjct: 291 NFTVGVDFTGSNG--DPRSPD--SLHYISPNGVNEYLTALWSVGLVIQDYDADKMFPAFGFGAQIPPQWQVSHEFPMNFNPSNPYCNGIQGIVEAYRSCLPQIKLYGPTNFSPIINHVARFAAAATQQQTASQYFVLLIITDGVIT------------DLDETRQAIVNASRLPMS 450
BLAST of CX306347 vs. ExPASy Swiss-Prot
Match: CPNE3_MOUSE (Copine-3 OS=Mus musculus GN=Cpne3 PE=1 SV=2) HSP 1 Score: 91.2781 bits (225), Expect = 3.687e-18 Identity = 62/176 (35.23%), Postives = 90/176 (51.14%), Query Frame = 2 Query: 77 NLVVGIDFTKSNEWTGKRSFNRRSLHYIG-DGLNPYEQAISIIGKTLAVFDEDNLIPCYGFGDASTHDQDVS-----SFYSGGRFCYGFEEVLSRYREIVPNLKLAGPTSFAPVIE-----MAMSIVEQSGGQYHVLLIIADGQVTRSVDTVRGCLSPQEQKTVDAIVKASELPLS 571 N VG+DFT SN G S + SLHYI +G+N Y AI +G + +D D + P +GFG VS +F +C G + ++ YR +P ++L GPT+F+P+I A + +Q+ QY VLLII DG +T +T AIV A++LP+S Sbjct: 291 NFTVGVDFTGSN---GDPS-SPDSLHYISPNGVNEYLTAIWSVGLVIQDYDADKMFPAFGFGAQVPPQWQVSHEFPMNFNPSNPYCNGIQGIVEAYRTCLPQIRLYGPTNFSPIINHVARFAAAATQQQTASQYFVLLIITDGVIT------------DLDETRQAIVNAAKLPMS 450
BLAST of CX306347 vs. ExPASy Swiss-Prot
Match: CPNA_DICDI (Copine-A OS=Dictyostelium discoideum GN=cpnA PE=2 SV=1) HSP 1 Score: 90.8929 bits (224), Expect = 4.816e-18 Identity = 64/175 (36.57%), Postives = 84/175 (48.00%), Query Frame = 2 Query: 77 NLVVGIDFTKSNEWTGKRSFNRRSLHYIG-DGLNPYEQAISIIGKTLAVFDEDNLIPCYGFGDASTHDQDVSSFY-----SGGRFCYGFEEVLSRYREIVPNLKLAGPTSFAPVIEMAMSIV----EQSGGQYHVLLIIADGQVTRSVDTVRGCLSPQEQKTVDAIVKASELPLS 571 NL+VGID T SN S + SLHY GLN Y AI +G + + LIP YGFG +VS + + C G VL Y + + ++L GPT FAP+I MA QS +Y +L+II DG++ T+DAIVK+S LPLS Sbjct: 286 NLIVGIDCTASNG----DSNDPNSLHYKNAQGLNQYANAICSVGNVIVPYTTTPLIPVYGFGGIMPGQSEVSHCFPMTLNASNTLCCGVNGVLDCYYDNISKIQLHGPTYFAPLINMAARYASQGQSQSNQKYTILMIITDGEIL------------DADNTIDAIVKSSGLPLS 444
BLAST of CX306347 vs. ExPASy Swiss-Prot
Match: CPNE2_MOUSE (Copine-2 OS=Mus musculus GN=Cpne2 PE=2 SV=1) HSP 1 Score: 86.2705 bits (212), Expect = 1.186e-16 Identity = 57/173 (32.95%), Postives = 86/173 (49.71%), Query Frame = 2 Query: 86 VGIDFTKSNEWTGKRSFNRRSLHYIGD-GLNPYEQAISIIGKTLAVFDEDNLIPCYGFGDASTHDQDVS-----SFYSGGRFCYGFEEVLSRYREIVPNLKLAGPTSFAPVIE-----MAMSIVEQSGGQYHVLLIIADGQVTRSVDTVRGCLSPQEQKTVDAIVKASELPLS 571 VGIDFT SN + SLHYI G N Y AI +G+ + +D D + P GFG D VS +F FC G + + Y +P+++ GPT+F+P++ A + +Q+ QY +LLII DG ++ ++T A+V+AS+LP+S Sbjct: 310 VGIDFTASNG----NPLDPSSLHYINPMGTNEYLSAIWAVGQIIQDYDSDKMFPALGFGAQLPPDWKVSHEFAINFNPTNPFCSGVDGIAQAYSACLPHIRFYGPTNFSPIVNHVARFAAQATQQQTATQYFILLIITDGVIS------------DMEETRHAVVQASKLPMS 466 The following BLAST results are available for this feature:
BLAST of CX306347 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 29
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Sequences
The
following sequences are available for this feature:
EST sequence >CX306347 ID=CX306347; Name=CX306347; organism=Citrus clementina; type=EST; length=572bpback to top |