CX306347

Overview
NameCX306347
Unique NameCX306347
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length572
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX306347 vs. ExPASy Swiss-Prot
Match: RGLG2_ARATH (E3 ubiquitin-protein ligase RGLG2 OS=Arabidopsis thaliana GN=RGLG2 PE=1 SV=1)

HSP 1 Score: 320.472 bits (820), Expect = 3.737e-87
Identity = 159/188 (84.57%), Postives = 173/188 (92.02%), Query Frame = 2
Query:    8 IADDYKSLDQVTEALARAGLESSNLVVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAVFDEDNLIPCYGFGDASTHDQDVSSFYSGGRFCYGFEEVLSRYREIVPNLKLAGPTSFAPVIEMAMSIVEQSGGQYHVLLIIADGQVTRSVDTVRGCLSPQEQKTVDAIVKASELPLS 571
            I+DDY SL+QVTEALARAGLESSNL+VGIDFTKSNEWTG RSFNR+SLH+IG   NPYEQAI+IIG+TLA FDEDNLIPCYGFGDASTHDQDV SF S  RFC GFEEVLSRY+EIVP LKLAGPTSFAP+I+MAM+IVEQSGGQYHVL+IIADGQVTRSVDT  G LSPQEQKTVDAIV+AS+LPLS
Sbjct:   99 ISDDYSSLEQVTEALARAGLESSNLIVGIDFTKSNEWTGARSFNRKSLHFIGSSPNPYEQAITIIGRTLAAFDEDNLIPCYGFGDASTHDQDVFSFNSEDRFCNGFEEVLSRYKEIVPQLKLAGPTSFAPIIDMAMTIVEQSGGQYHVLVIIADGQVTRSVDTENGQLSPQEQKTVDAIVQASKLPLS 286          
BLAST of CX306347 vs. ExPASy Swiss-Prot
Match: RGLG1_ARATH (E3 ubiquitin-protein ligase RGLG1 OS=Arabidopsis thaliana GN=RGLG1 PE=1 SV=1)

HSP 1 Score: 311.612 bits (797), Expect = 1.736e-84
Identity = 154/188 (81.91%), Postives = 170/188 (90.43%), Query Frame = 2
Query:    8 IADDYKSLDQVTEALARAGLESSNLVVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAVFDEDNLIPCYGFGDASTHDQDVSSFYSGGRFCYGFEEVLSRYREIVPNLKLAGPTSFAPVIEMAMSIVEQSGGQYHVLLIIADGQVTRSVDTVRGCLSPQEQKTVDAIVKASELPLS 571
            I+D+Y SL QV+EAL RAGLESSNL+VGIDFTKSNEWTG +SFNR+SLH++ +  NPYEQAI+IIG+TLA FDEDNLIPCYGFGDASTHDQDV SFY  GRFC GFEEVL+RYREIVP LKLAGPTSFAP+IEMAM++VEQS GQYHVL+IIADGQVTRSVDT  G LSPQEQKTVDAIVKAS LPLS
Sbjct:  133 ISDNYSSLLQVSEALGRAGLESSNLIVGIDFTKSNEWTGAKSFNRKSLHHLSNTPNPYEQAITIIGRTLAAFDEDNLIPCYGFGDASTHDQDVFSFYPEGRFCNGFEEVLARYREIVPQLKLAGPTSFAPIIEMAMTVVEQSSGQYHVLVIIADGQVTRSVDTEHGRLSPQEQKTVDAIVKASTLPLS 320          
BLAST of CX306347 vs. ExPASy Swiss-Prot
Match: CPNA2_CAEEL (Copine domain-containing protein 2 OS=Caenorhabditis elegans GN=cpna-2 PE=2 SV=3)

HSP 1 Score: 155.221 bits (391), Expect = 2.079e-37
Identity = 83/188 (44.15%), Postives = 118/188 (62.77%), Query Frame = 2
Query:   20 YKSLDQVTEALARAGLESSNLVVGIDFTKSNEWTGKRSFNRRSLHYIGDG-LNPYEQAISIIGKTLAVFDEDNLIPCYGFGDASTHDQ---DVSSFYSGGRFCYGFEEVLSRYREIVPNLKLAGPTSFAPVIEMAMSIVEQSGGQYHVLLIIADGQVTRSVDTVRGCLSPQEQKTVDAIVKASELPLS 571
            +K+LD + +A+  AGLE SNL+ GID+TKSN + G+R+F++R LH I    +NPY+Q I I+GKTL+ FD D  IP YGFGD    D    +++  Y   + C GFEEVL  Y E+ P ++++GPT+F P+I+ A+ I ++    YH+L+I+ADGQVT             E+    AI  AS  PLS
Sbjct: 7299 FKTLDDIVKAIKHAGLEYSNLIFGIDYTKSNFYQGERTFDKRPLHTIDPAEMNPYQQVIQIVGKTLSSFDADGQIPAYGFGDEEFTDHGIFNIAERYDLEKDCNGFEEVLRVYNEVTPTIEMSGPTNFVPLIDRAIEICKEK-HSYHILVIVADGQVT------------NEKINQKAIAAASHYPLS 7473          
BLAST of CX306347 vs. ExPASy Swiss-Prot
Match: CPNE1_MOUSE (Copine-1 OS=Mus musculus GN=Cpne1 PE=1 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.553e-19
Identity = 62/176 (35.23%), Postives = 91/176 (51.70%), Query Frame = 2
Query:   77 NLVVGIDFTKSNEWTGKRSFNRRSLHYIGD-GLNPYEQAISIIGKTLAVFDEDNLIPCYGFGDASTHDQDVS-----SFYSGGRFCYGFEEVLSRYREIVPNLKLAGPTSFAPVIE-----MAMSIVEQSGGQYHVLLIIADGQVTRSVDTVRGCLSPQEQKTVDAIVKASELPLS 571
            N  VG+DFT SN   G  S +  SLHY+   G+N Y  A+  +G  +  +D D L P +GFG     D  VS     +F     +C G + ++  YR+ +P ++L GPT+FAP+I       A +  ++S  QY VLL++ DG VT              + T  A+V AS+LP+S
Sbjct:  284 NFTVGVDFTGSN---GDPS-SPDSLHYLSPTGVNEYLTALWSVGSVVQDYDSDKLFPAFGFGAQVPPDWQVSHEFALNFNPSNPYCAGIQGIVDAYRQALPQVRLYGPTNFAPIINHVARFAAQAAQQRSASQYFVLLLLTDGAVT------------DVEATCKAVVDASKLPMS 443          
BLAST of CX306347 vs. ExPASy Swiss-Prot
Match: CPNE3_PONAB (Copine-3 OS=Pongo abelii GN=CPNE3 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 7.429e-19
Identity = 63/176 (35.80%), Postives = 90/176 (51.14%), Query Frame = 2
Query:   77 NLVVGIDFTKSNEWTGKRSFNRRSLHYIG-DGLNPYEQAISIIGKTLAVFDEDNLIPCYGFGDASTHDQDVS-----SFYSGGRFCYGFEEVLSRYREIVPNLKLAGPTSFAPVIE-----MAMSIVEQSGGQYHVLLIIADGQVTRSVDTVRGCLSPQEQKTVDAIVKASELPLS 571
            N  VG+DFT SN+    RS +  SLHYI  +G+N Y  A+  +G  +  +D D + P +GFG        VS     +F     +C G + ++  YR  +P +KL GPT+F+P+I       A +  +Q+  QY VLLII DG +T               +T  AIV AS LP+S
Sbjct:  291 NFTVGVDFTGSND--DPRSPD--SLHYISPNGVNEYLTALWSVGLVIQDYDADKMFPAFGFGAQIPPQWQVSHEFPMNFNPSNPYCNGIQGIVEAYRSCLPQIKLYGPTNFSPIINHVARFAAAAAQQQTASQYFVLLIITDGVIT------------DLDETRQAIVNASRLPMS 450          
BLAST of CX306347 vs. ExPASy Swiss-Prot
Match: CPNE1_HUMAN (Copine-1 OS=Homo sapiens GN=CPNE1 PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.267e-18
Identity = 60/176 (34.09%), Postives = 91/176 (51.70%), Query Frame = 2
Query:   77 NLVVGIDFTKSNEWTGKRSFNRRSLHYIGD-GLNPYEQAISIIGKTLAVFDEDNLIPCYGFGDASTHDQDVS-----SFYSGGRFCYGFEEVLSRYREIVPNLKLAGPTSFAPVIE-----MAMSIVEQSGGQYHVLLIIADGQVTRSVDTVRGCLSPQEQKTVDAIVKASELPLS 571
            N  VG+DFT SN   G  S +  SLHY+   G+N Y  A+  +G  +  +D D L P +GFG     D  VS     +F     +C G + ++  YR+ +P ++L GPT+FAP+I       A +  + +  QY +LL++ DG VT              + T +A+V+AS LP+S
Sbjct:  285 NFTVGVDFTGSN---GDPS-SPDSLHYLSPTGVNEYLMALWSVGSVVQDYDSDKLFPAFGFGAQVPPDWQVSHEFALNFNPSNPYCAGIQGIVDAYRQALPQVRLYGPTNFAPIINHVARFAAQAAHQGTASQYFMLLLLTDGAVT------------DVEATREAVVRASNLPMS 444          
BLAST of CX306347 vs. ExPASy Swiss-Prot
Match: CPNE3_HUMAN (Copine-3 OS=Homo sapiens GN=CPNE3 PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.162e-18
Identity = 63/176 (35.80%), Postives = 89/176 (50.57%), Query Frame = 2
Query:   77 NLVVGIDFTKSNEWTGKRSFNRRSLHYIG-DGLNPYEQAISIIGKTLAVFDEDNLIPCYGFGDASTHDQDVS-----SFYSGGRFCYGFEEVLSRYREIVPNLKLAGPTSFAPVIE-----MAMSIVEQSGGQYHVLLIIADGQVTRSVDTVRGCLSPQEQKTVDAIVKASELPLS 571
            N  VG+DFT SN     RS +  SLHYI  +G+N Y  A+  +G  +  +D D + P +GFG        VS     +F     +C G + ++  YR  +P +KL GPT+F+P+I       A +  +Q+  QY VLLII DG +T               +T  AIV AS LP+S
Sbjct:  291 NFTVGVDFTGSNG--DPRSPD--SLHYISPNGVNEYLTALWSVGLVIQDYDADKMFPAFGFGAQIPPQWQVSHEFPMNFNPSNPYCNGIQGIVEAYRSCLPQIKLYGPTNFSPIINHVARFAAAATQQQTASQYFVLLIITDGVIT------------DLDETRQAIVNASRLPMS 450          
BLAST of CX306347 vs. ExPASy Swiss-Prot
Match: CPNE3_MOUSE (Copine-3 OS=Mus musculus GN=Cpne3 PE=1 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 3.687e-18
Identity = 62/176 (35.23%), Postives = 90/176 (51.14%), Query Frame = 2
Query:   77 NLVVGIDFTKSNEWTGKRSFNRRSLHYIG-DGLNPYEQAISIIGKTLAVFDEDNLIPCYGFGDASTHDQDVS-----SFYSGGRFCYGFEEVLSRYREIVPNLKLAGPTSFAPVIE-----MAMSIVEQSGGQYHVLLIIADGQVTRSVDTVRGCLSPQEQKTVDAIVKASELPLS 571
            N  VG+DFT SN   G  S +  SLHYI  +G+N Y  AI  +G  +  +D D + P +GFG        VS     +F     +C G + ++  YR  +P ++L GPT+F+P+I       A +  +Q+  QY VLLII DG +T               +T  AIV A++LP+S
Sbjct:  291 NFTVGVDFTGSN---GDPS-SPDSLHYISPNGVNEYLTAIWSVGLVIQDYDADKMFPAFGFGAQVPPQWQVSHEFPMNFNPSNPYCNGIQGIVEAYRTCLPQIRLYGPTNFSPIINHVARFAAAATQQQTASQYFVLLIITDGVIT------------DLDETRQAIVNAAKLPMS 450          
BLAST of CX306347 vs. ExPASy Swiss-Prot
Match: CPNA_DICDI (Copine-A OS=Dictyostelium discoideum GN=cpnA PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 4.816e-18
Identity = 64/175 (36.57%), Postives = 84/175 (48.00%), Query Frame = 2
Query:   77 NLVVGIDFTKSNEWTGKRSFNRRSLHYIG-DGLNPYEQAISIIGKTLAVFDEDNLIPCYGFGDASTHDQDVSSFY-----SGGRFCYGFEEVLSRYREIVPNLKLAGPTSFAPVIEMAMSIV----EQSGGQYHVLLIIADGQVTRSVDTVRGCLSPQEQKTVDAIVKASELPLS 571
            NL+VGID T SN      S +  SLHY    GLN Y  AI  +G  +  +    LIP YGFG       +VS  +     +    C G   VL  Y + +  ++L GPT FAP+I MA         QS  +Y +L+II DG++                 T+DAIVK+S LPLS
Sbjct:  286 NLIVGIDCTASNG----DSNDPNSLHYKNAQGLNQYANAICSVGNVIVPYTTTPLIPVYGFGGIMPGQSEVSHCFPMTLNASNTLCCGVNGVLDCYYDNISKIQLHGPTYFAPLINMAARYASQGQSQSNQKYTILMIITDGEIL------------DADNTIDAIVKSSGLPLS 444          
BLAST of CX306347 vs. ExPASy Swiss-Prot
Match: CPNE2_MOUSE (Copine-2 OS=Mus musculus GN=Cpne2 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.186e-16
Identity = 57/173 (32.95%), Postives = 86/173 (49.71%), Query Frame = 2
Query:   86 VGIDFTKSNEWTGKRSFNRRSLHYIGD-GLNPYEQAISIIGKTLAVFDEDNLIPCYGFGDASTHDQDVS-----SFYSGGRFCYGFEEVLSRYREIVPNLKLAGPTSFAPVIE-----MAMSIVEQSGGQYHVLLIIADGQVTRSVDTVRGCLSPQEQKTVDAIVKASELPLS 571
            VGIDFT SN        +  SLHYI   G N Y  AI  +G+ +  +D D + P  GFG     D  VS     +F     FC G + +   Y   +P+++  GPT+F+P++       A +  +Q+  QY +LLII DG ++              ++T  A+V+AS+LP+S
Sbjct:  310 VGIDFTASNG----NPLDPSSLHYINPMGTNEYLSAIWAVGQIIQDYDSDKMFPALGFGAQLPPDWKVSHEFAINFNPTNPFCSGVDGIAQAYSACLPHIRFYGPTNFSPIVNHVARFAAQATQQQTATQYFILLIITDGVIS------------DMEETRHAVVQASKLPMS 466          
The following BLAST results are available for this feature:
BLAST of CX306347 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 29
Match NameE-valueIdentityDescription
RGLG2_ARATH3.737e-8784.57E3 ubiquitin-protein ligase RGLG2 OS=Arabidopsis t... [more]
RGLG1_ARATH1.736e-8481.91E3 ubiquitin-protein ligase RGLG1 OS=Arabidopsis t... [more]
CPNA2_CAEEL2.079e-3744.15Copine domain-containing protein 2 OS=Caenorhabdit... [more]
CPNE1_MOUSE2.553e-1935.23Copine-1 OS=Mus musculus GN=Cpne1 PE=1 SV=1[more]
CPNE3_PONAB7.429e-1935.80Copine-3 OS=Pongo abelii GN=CPNE3 PE=2 SV=1[more]
CPNE1_HUMAN1.267e-1834.09Copine-1 OS=Homo sapiens GN=CPNE1 PE=1 SV=1[more]
CPNE3_HUMAN2.162e-1835.80Copine-3 OS=Homo sapiens GN=CPNE3 PE=1 SV=1[more]
CPNE3_MOUSE3.687e-1835.23Copine-3 OS=Mus musculus GN=Cpne3 PE=1 SV=2[more]
CPNA_DICDI4.816e-1836.57Copine-A OS=Dictyostelium discoideum GN=cpnA PE=2 ... [more]
CPNE2_MOUSE1.186e-1632.95Copine-2 OS=Mus musculus GN=Cpne2 PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC18017A09Rv Drought1 Citrus clementina cDNA clone C18017A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX306347 ID=CX306347; Name=CX306347; organism=Citrus clementina; type=EST; length=572bp
GCGGGGAATTGCTGATGATTACAAGTCCTTAGACCAGGTGACTGAAGCTC
TTGCTCGTGCTGGCCTTGAATCTTCTAATCTCGTTGTTGGTATTGATTTC
ACAAAGAGTAATGAGTGGACAGGTAAAAGGTCATTTAACAGACGAAGCCT
GCATTACATCGGAGATGGTTTAAATCCCTATGAGCAAGCAATATCCATTA
TTGGGAAAACTTTAGCTGTCTTTGACGAGGATAACTTGATTCCCTGTTAT
GGATTTGGTGATGCATCAACTCATGATCAAGATGTCTCCAGTTTCTATTC
AGGTGGGAGGTTTTGTTATGGATTTGAGGAGGTATTAAGTCGGTACAGGG
AAATTGTGCCTAATCTAAAACTTGCAGGACCAACATCATTTGCCCCCGTC
ATTGAAATGGCTATGTCTATCGTTGAGCAGAGTGGTGGCCAGTACCATGT
ATTATTAATAATTGCTGATGGGCAGGTAACTAGAAGTGTTGATACAGTGC
GTGGTTGCTTAAGTCCTCAGGAGCAGAAGACAGTTGATGCAATTGTAAAA
GCAAGCGAGCTTCCCTTGTCAA
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