CX306349

Overview
NameCX306349
Unique NameCX306349
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length555
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX306349_ssr134 microsatellite CX306349_ssr134:134..145. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig872 contig Ccv1_Contig872:228..781. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX306349 vs. ExPASy Swiss-Prot
Match: HS17A_ORYSJ (17.9 kDa class I heat shock protein OS=Oryza sativa subsp. japonica GN=HSP17.9A PE=2 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 8.934e-35
Identity = 74/107 (69.16%), Postives = 83/107 (77.57%), Query Frame = -3
Query:  233 RIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGEGSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXKAIEISG 553
            RIDWKETP+AHVFKAD+PGL+         +G ILQISGE +KEQEEK D+WHRVERSSGKFLRRFRLPDNAK EQ+KASMENGVLTVT           K+I+ISG
Sbjct:   55 RIDWKETPEAHVFKADVPGLKKEEVKVEVDDGNILQISGERNKEQEEKTDQWHRVERSSGKFLRRFRLPDNAKPEQIKASMENGVLTVTVPKEEAKKPDVKSIQISG 161          
BLAST of CX306349 vs. ExPASy Swiss-Prot
Match: HSP11_DAUCA (17.8 kDa class I heat shock protein OS=Daucus carota PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 2.599e-34
Identity = 73/106 (68.87%), Postives = 84/106 (79.25%), Query Frame = -3
Query:  233 IDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGEGSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXKAIEISG 550
            IDWKETPQAHVFKADLPGL+         EG++LQISGE +KE+EEKNDKWHRVERSSGKFLRRFRLP+NAKV++VKA+M NGV+TVT           KAI+ISG
Sbjct:   52 IDWKETPQAHVFKADLPGLKKEEVKVELEEGKVLQISGERNKEKEEKNDKWHRVERSSGKFLRRFRLPENAKVDEVKAAMANGVVTVTVPKVEIKKPEVKAIDISG 157          
BLAST of CX306349 vs. ExPASy Swiss-Prot
Match: HS181_ORYSJ (18.1 kDa class I heat shock protein OS=Oryza sativa subsp. japonica GN=HSP18.1 PE=2 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 4.434e-34
Identity = 71/107 (66.36%), Postives = 82/107 (76.64%), Query Frame = -3
Query:  233 RIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGEGSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXKAIEISG 553
            RIDWKETP+AHVFKAD+PGL+         +G +LQISGE SKEQEEK DKWHRVERSSGKFLRRFRLP+N K EQ+KASMENGVLTVT           K+I+++G
Sbjct:   55 RIDWKETPEAHVFKADVPGLKKEEVKVEVEDGNVLQISGERSKEQEEKTDKWHRVERSSGKFLRRFRLPENTKPEQIKASMENGVLTVTVPKEEPKKPDVKSIQVTG 161          
BLAST of CX306349 vs. ExPASy Swiss-Prot
Match: HS177_ORYSJ (17.7 kDa class I heat shock protein OS=Oryza sativa subsp. japonica GN=HSP17.7 PE=2 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 5.791e-34
Identity = 72/107 (67.29%), Postives = 82/107 (76.64%), Query Frame = -3
Query:  233 RIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGEGSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXKAIEISG 553
            RIDWKETP+ HVFKAD+PGL+         +G ILQISGE S+EQEEK+DKWHRVERSSGKFLRRFRLP+N K EQ+KASMENGVLTVT           K+I+ISG
Sbjct:   53 RIDWKETPEVHVFKADVPGLKKEEVKVEVDDGNILQISGERSREQEEKSDKWHRVERSSGKFLRRFRLPENTKPEQIKASMENGVLTVTVPKEEPKKPDVKSIQISG 159          
BLAST of CX306349 vs. ExPASy Swiss-Prot
Match: HSP16_SOYBN (18.5 kDa class I heat shock protein OS=Glycine max GN=HSP18.5-C PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 9.877e-34
Identity = 71/107 (66.36%), Postives = 83/107 (77.57%), Query Frame = -3
Query:  233 RIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGEGSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXKAIEISG 553
            R+DWKETP+AHVFKAD+PGL+         + ++LQISGE + E+E+KND WHRVERSSGKF+RRFRLP+NAKVEQVKASMENGVLTVT           KAIEISG
Sbjct:   55 RVDWKETPEAHVFKADIPGLKKEEVKVQIEDDKVLQISGERNVEKEDKNDTWHRVERSSGKFMRRFRLPENAKVEQVKASMENGVLTVTVPKEEVKKPDVKAIEISG 161          
BLAST of CX306349 vs. ExPASy Swiss-Prot
Match: HS16C_ORYSJ (16.9 kDa class I heat shock protein 3 OS=Oryza sativa subsp. japonica GN=HSP16.9C PE=2 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 9.877e-34
Identity = 71/107 (66.36%), Postives = 84/107 (78.50%), Query Frame = -3
Query:  233 RIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGEGSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXKAIEISG 553
            R+DWKETP++HVFKADLPG++         EG +L ISG+ SKE+E+KNDKWHRVERSSG+F+RRFRLP+NAKV+QVKASMENGVLTVT           KAIEISG
Sbjct:   43 RVDWKETPESHVFKADLPGVKKEEVKVEVEEGNVLVISGQRSKEKEDKNDKWHRVERSSGQFMRRFRLPENAKVDQVKASMENGVLTVTVPKAEVKKPEVKAIEISG 149          
BLAST of CX306349 vs. ExPASy Swiss-Prot
Match: HSP11_PEA (18.1 kDa class I heat shock protein OS=Pisum sativum GN=HSP18.1 PE=2 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 1.290e-33
Identity = 71/107 (66.36%), Postives = 84/107 (78.50%), Query Frame = -3
Query:  233 RIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGEGSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXKAIEISG 553
            R+DWKETP+AHVFKADLPGL+         + R+LQISGE S E+E+KND+WHRVERSSGKFLRRFRLP+NAK+++VKASMENGVLTVT           K+IEISG
Sbjct:   52 RVDWKETPEAHVFKADLPGLKKEEVKVEVEDDRVLQISGERSVEKEDKNDEWHRVERSSGKFLRRFRLPENAKMDKVKASMENGVLTVTVPKEEIKKAEVKSIEISG 158          
BLAST of CX306349 vs. ExPASy Swiss-Prot
Match: HS17C_ARATH (17.6 kDa class I heat shock protein 3 OS=Arabidopsis thaliana GN=HSP17.6C PE=2 SV=2)

HSP 1 Score: 142.124 bits (357), Expect = 1.685e-33
Identity = 70/107 (65.42%), Postives = 82/107 (76.64%), Query Frame = -3
Query:  233 RIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGEGSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXKAIEISG 553
            ++DW+ETP+AHVFKADLPGLR         +G ILQISGE S E EEKNDKWHRVERSSGKF RRFRLP+NAK+E++KASMENGVL+VT           K+I+ISG
Sbjct:   51 KVDWRETPEAHVFKADLPGLRKEEVKVEVEDGNILQISGERSNENEEKNDKWHRVERSSGKFTRRFRLPENAKMEEIKASMENGVLSVTVPKVPEKKPEVKSIDISG 157          
BLAST of CX306349 vs. ExPASy Swiss-Prot
Match: HS174_ORYSJ (17.4 kDa class I heat shock protein OS=Oryza sativa subsp. japonica GN=HSP17.4 PE=2 SV=2)

HSP 1 Score: 142.124 bits (357), Expect = 1.685e-33
Identity = 71/107 (66.36%), Postives = 81/107 (75.70%), Query Frame = -3
Query:  233 RIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGEGSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXKAIEISG 553
            RIDWKETP+AHVFKAD+PGL+         +G +LQISGE  KEQEEK DKWHRVERSSGKFLRRFRLP+N K EQ+KASMENGVLTVT           K+I+I+G
Sbjct:   48 RIDWKETPEAHVFKADVPGLKKEEVKVEVEDGNVLQISGERIKEQEEKTDKWHRVERSSGKFLRRFRLPENTKPEQIKASMENGVLTVTVPKEEPKKPDVKSIQITG 154          
BLAST of CX306349 vs. ExPASy Swiss-Prot
Match: HSP12_SOLPE (17.6 kDa class I heat shock protein OS=Solanum peruvianum PE=2 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 2.200e-33
Identity = 72/107 (67.29%), Postives = 83/107 (77.57%), Query Frame = -3
Query:  233 RIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGEGSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXKAIEISG 553
            RIDWKETP+AHVFKADLPGL+         E R+LQISGE + E+E+KND WHRVERSSGKF+RRFRLP+NAK++QVKASMENGVLTVT           K+IEISG
Sbjct:   48 RIDWKETPEAHVFKADLPGLKKEEVKVEVEEDRVLQISGERNVEKEDKNDTWHRVERSSGKFMRRFRLPENAKMDQVKASMENGVLTVTVPKEEVNNPDVKSIEISG 154          
The following BLAST results are available for this feature:
BLAST of CX306349 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 53
Match NameE-valueIdentityDescription
HS17A_ORYSJ8.934e-3569.1617.9 kDa class I heat shock protein OS=Oryza sativ... [more]
HSP11_DAUCA2.599e-3468.8717.8 kDa class I heat shock protein OS=Daucus caro... [more]
HS181_ORYSJ4.434e-3466.3618.1 kDa class I heat shock protein OS=Oryza sativ... [more]
HS177_ORYSJ5.791e-3467.2917.7 kDa class I heat shock protein OS=Oryza sativ... [more]
HSP16_SOYBN9.877e-3466.3618.5 kDa class I heat shock protein OS=Glycine max... [more]
HS16C_ORYSJ9.877e-3466.3616.9 kDa class I heat shock protein 3 OS=Oryza sat... [more]
HSP11_PEA1.290e-3366.3618.1 kDa class I heat shock protein OS=Pisum sativ... [more]
HS17C_ARATH1.685e-3365.4217.6 kDa class I heat shock protein 3 OS=Arabidops... [more]
HS174_ORYSJ1.685e-3366.3617.4 kDa class I heat shock protein OS=Oryza sativ... [more]
HSP12_SOLPE2.200e-3367.2917.6 kDa class I heat shock protein OS=Solanum per... [more]

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Properties
Property NameValue
Genbank descriptionC18017A11Rv Drought1 Citrus clementina cDNA clone C18017A11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX306349 ID=CX306349; Name=CX306349; organism=Citrus clementina; type=EST; length=555bp
TTTTTTTTTTTTTTTTTTTTTCTTTTTTTCCATTTAAAAAACTAGTTACA
ACGCTTGAGACTGGCTCCTGAAGCTCTTGCAAACACACAAACATAATCAC
ATCAAATTAAACAGGGGGAAGGGAAGAAAACAAACACACACACACATACA
AACACACAAGGGCTTTGCCTTCGTACCAAATTTATTAGCAAACCAAAGAC
ACTATCTTGAAAACATTTACAGTTATCACTTAGCCAGAGATCTCAATAGC
CTTAACTTCAGGTTTCTTCTCCTCCTGTTTAGGAACGGTGACTGTGAGCA
CACCATTCTCCATGCTGGCCTTAACCTGTTCCACCTTAGCATTGTCGGGC
AACCTGAACCTCCTCAGGAACTTGCCACTGCTCCTCTCGACGCGATGCCA
CTTGTCATTCTTCTCTTCCTGCTCCTTGCTCCCCTCTCCGCTTATCTGCA
GAATCCTGCCCTCTTCAACCTCAACTTTTACTTCTTCTTTCCTCAGCCCT
GGAAGATCAGCTTTGAATACGTGAGCCTGAGGAGTCTCTTTCCAGTCAAT
TCTTG
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