CX306368

Overview
NameCX306368
Unique NameCX306368
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length561
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14389 contig Ccv1_Contig14389:3..563. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX306368 vs. ExPASy Swiss-Prot
Match: RCCR_ARATH (Red chlorophyll catabolite reductase, chloroplastic OS=Arabidopsis thaliana GN=RCCR PE=1 SV=2)

HSP 1 Score: 170.629 bits (431), Expect = 4.603e-42
Identity = 85/128 (66.41%), Postives = 104/128 (81.25%), Query Frame = 1 
Query:  181 MDSHNEG-RKKFMEFPYASGPVRQLMVDLVSTVENTLDSQLLPCTLPPDVQYSENQNGTAQASLQIRSGLKSSLIDFILGSWVHSELPTGAALNITSLSAYLNSSTDAPNLLIELIQSSPSSLVLILD 561
            M+ H++  R+KFMEFPY S   +QLMVDL+STVEN L SQLLPC LPPDV+   N NG+A+ASL IRSG KSS IDF++GSW+H ++PTG +LNITS+S +LNSST APN ++ELIQSS  SLVLILD
Sbjct:   41 MEDHDDHLRRKFMEFPYVSPTRKQLMVDLMSTVENRLQSQLLPCNLPPDVRNFNNPNGSAEASLHIRSGDKSSPIDFVIGSWIHCKIPTGVSLNITSISGFLNSSTKAPNFVVELIQSSSKSLVLILD 168
The following BLAST results are available for this feature:
BLAST of CX306368 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
RCCR_ARATH4.603e-4266.41Red chlorophyll catabolite reductase, chloroplasti... [more]
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Properties
Property NameValue
Genbank descriptionC18017C08Rv Drought1 Citrus clementina cDNA clone C18017C08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX306368 ID=CX306368; Name=CX306368; organism=Citrus clementina; type=EST; length=561bp
GCGGGACGAAGTGATTAAGAACGAATGGCTGTGAACCACTTATGCCAGTG
GCAGTATTTACGCTTCCAGCTCTCTCATCCATCGGCTCCGGCTTGCAGAT
ATTTATCTCCTTCGAGATCAAAGTCCCCAACGTCGTCAACCGCCAAAGTC
AATTGTTCTGCCGCACCATCGTCATCTCCGATGGACTCGCACAACGAAGG
CCGTAAGAAGTTCATGGAATTCCCCTACGCTTCAGGCCCTGTTAGGCAGC
TGATGGTTGATCTCGTATCAACGGTGGAGAATACCCTCGATTCGCAGCTA
CTCCCTTGCACTCTGCCACCAGATGTACAGTATTCCGAGAACCAAAATGG
CACTGCTCAAGCTTCTCTTCAAATCAGATCCGGGCTCAAGTCCTCACTGA
TTGATTTCATACTGGGAAGTTGGGTACACAGTGAGCTACCAACAGGAGCA
GCATTGAACATAACAAGCCTTTCAGCATATCTAAACTCTTCCACTGATGC
ACCAAACTTGCTAATTGAGCTCATCCAGAGTAGCCCTTCTTCTCTAGTCC
TCATCCTTGAC
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