CX306392

Overview
NameCX306392
Unique NameCX306392
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length385
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1325 contig Ccv1_Contig1325:207..591. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX306392 vs. ExPASy Swiss-Prot
Match: MPK12_ORYSJ (Mitogen-activated protein kinase 12 OS=Oryza sativa subsp. japonica GN=MPK12 PE=1 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 3.484e-16
Identity = 51/112 (45.54%), Postives = 64/112 (57.14%), Query Frame = 2
Query:    8 SGVDQFKQQFARLEEQYGKRERHIPLRRKYTSLPRERISTSGDEATDQTDSLKKRTASVTRATLQSPPSLPRFAEFQSARGNSLTMQHGSSSQKCGVLLRSDSMSASKCVGV 343
            SGVD+FK+QFA LEE Y K ER  PL+RK+ SLPRER+  S D    Q  + ++R+A     T  SPP      +  SA  N +T    SS       L+S S+SASKCV V
Sbjct:  442 SGVDRFKRQFAHLEENYSKGERGSPLQRKHASLPRERVGVSKDGYNQQNTNDQERSADSVARTTVSPPMSQDAQQHGSAGQNGVTSTDLSSRS----YLKSASISASKCVAV 549          
BLAST of CX306392 vs. ExPASy Swiss-Prot
Match: MPK17_ARATH (Mitogen-activated protein kinase 17 OS=Arabidopsis thaliana GN=MPK17 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 4.550e-16
Identity = 49/115 (42.61%), Postives = 68/115 (59.13%), Query Frame = 2
Query:    8 SGVDQFKQQFARLEEQYGKRERH--IPLRRKYTSLPRERISTSGDEATDQTDSLKKRTASVTRATLQSPPSLPRFAEFQSARGNSLTMQHGSSSQKCGVLLRSDSMSASKCVGVN 346
            SGVDQFKQ+FARLEE     E H   P +RKYTSLPRER+ +S DE +D          S + + + +PP  P  A   S++  S   +  +  ++   L+RSDS+ AS+CVGV+
Sbjct:  373 SGVDQFKQEFARLEEHNDDEEEHNSPPHQRKYTSLPRERVCSSEDEGSDSV-----HAQSSSASVVFTPPQTPNTATGLSSQKASQVDKAATPVKRSACLMRSDSICASRCVGVS 482          
BLAST of CX306392 vs. ExPASy Swiss-Prot
Match: MPK9_ARATH (Mitogen-activated protein kinase 9 OS=Arabidopsis thaliana GN=MPK9 PE=2 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 1.324e-15
Identity = 46/112 (41.07%), Postives = 70/112 (62.50%), Query Frame = 2
Query:    8 SGVDQFKQQFARLEEQYGKRERHIPLRRKYTSLPRERISTSGDEATDQTDSLKKRTASVTRATLQSPPSLPRFAEFQSARGNSLTMQHGSSSQKCGVLLRSDSMSASKCVGV 343
            SGVD+FK+QFA LEE YGK E+  PL+R++ SLPRER+     E       ++ R+ +    TL+SPP+    ++ + +   + T Q G S++    LL+S S+SASKC+G+
Sbjct:  378 SGVDRFKRQFAHLEENYGKGEKGSPLQRQHASLPRERVPAPKKENGSHNHDIENRSIASLVTTLESPPT----SQHEGSDYRNGTSQTGYSARS---LLKSASISASKCIGM 482          
BLAST of CX306392 vs. ExPASy Swiss-Prot
Match: MPK13_ORYSJ (Mitogen-activated protein kinase 13 OS=Oryza sativa subsp. japonica GN=MPK13 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.562e-14
Identity = 45/111 (40.54%), Postives = 65/111 (58.56%), Query Frame = 2
Query:    8 SGVDQFKQQFARLEEQYGKRERHIPLRRKYTSLPRERISTSGDEATDQTDSLKKRTASVTRATLQSPP-SLPRFAEFQSARGNSLTMQHGSSSQKCGVLLRSDSMSASKCV 337
            SGVD+FK+QFA LEE Y + ER  PLRR++ SLPRER+ +S D     +D+ ++R  S    T+ SPP S  +     SA  N +   + +      + L+S S+SAS C+
Sbjct:  368 SGVDRFKRQFAHLEENYSRGERSTPLRRQHASLPRERVCSSVDSNNQDSDNEERRAISSIARTMISPPRSQEKGKNRASAYPNGIINLNSNPK----IYLKSASISASTCI 474          
BLAST of CX306392 vs. ExPASy Swiss-Prot
Match: MPK13_ORYSI (Mitogen-activated protein kinase 13 OS=Oryza sativa subsp. indica GN=MPK13 PE=2 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 5.562e-14
Identity = 45/111 (40.54%), Postives = 65/111 (58.56%), Query Frame = 2
Query:    8 SGVDQFKQQFARLEEQYGKRERHIPLRRKYTSLPRERISTSGDEATDQTDSLKKRTASVTRATLQSPP-SLPRFAEFQSARGNSLTMQHGSSSQKCGVLLRSDSMSASKCV 337
            SGVD+FK+QFA LEE Y + ER  PLRR++ SLPRER+ +S D     +D+ ++R  S    T+ SPP S  +     SA  N +   + +      + L+S S+SAS C+
Sbjct:  368 SGVDRFKRQFAHLEENYSRGERSTPLRRQHASLPRERVCSSVDSNNQDSDNEERRAISSIARTMISPPRSQEKGKNRASAYPNGIINLNSNPK----IYLKSASISASTCI 474          
BLAST of CX306392 vs. ExPASy Swiss-Prot
Match: MPK15_ARATH (Mitogen-activated protein kinase 15 OS=Arabidopsis thaliana GN=MPK15 PE=2 SV=3)

HSP 1 Score: 74.7146 bits (182), Expect = 1.618e-13
Identity = 44/116 (37.93%), Postives = 66/116 (56.90%), Query Frame = 2
Query:    8 SGVDQFKQQFARLEEQYGKRERHIPLRRKYTSLPRERISTSGDEATDQ-TDSLKKRTASVTRATLQSPPSLPRFAEFQSARGNSLTMQHGSSSQKCGVLLRSDSMSASKCVGVNGK 352
            SGVD+F++QFA LEE  G   R   L+R++ SLPRER+  S +E  ++ ++ +++RT +   +TL SP +       Q A G   T   G        L++S S+S SKC+GV  K
Sbjct:  445 SGVDRFRRQFAHLEENQGPGGRSNALQRQHASLPRERVPASKNETVEERSNDIERRTTAAVASTLDSPKA------SQQAEG---TENGGGGGYSARNLMKSSSISGSKCIGVQSK 551          
The following BLAST results are available for this feature:
BLAST of CX306392 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
MPK12_ORYSJ3.484e-1645.54Mitogen-activated protein kinase 12 OS=Oryza sativ... [more]
MPK17_ARATH4.550e-1642.61Mitogen-activated protein kinase 17 OS=Arabidopsis... [more]
MPK9_ARATH1.324e-1541.07Mitogen-activated protein kinase 9 OS=Arabidopsis ... [more]
MPK13_ORYSJ5.562e-1440.54Mitogen-activated protein kinase 13 OS=Oryza sativ... [more]
MPK13_ORYSI5.562e-1440.54Mitogen-activated protein kinase 13 OS=Oryza sativ... [more]
MPK15_ARATH1.618e-1337.93Mitogen-activated protein kinase 15 OS=Arabidopsis... [more]
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Properties
Property NameValue
Genbank descriptionC18017E11Rv Drought1 Citrus clementina cDNA clone C18017E11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX306392 ID=CX306392; Name=CX306392; organism=Citrus clementina; type=EST; length=385bp
GCGGGCAAGTGGAGTTGACCAGTTTAAGCAGCAATTTGCCCGCCTTGAGG
AGCAATATGGTAAAAGAGAAAGACACATTCCACTCCGAAGAAAGTATACC
TCCTTGCCTAGGGAAAGAATCAGTACATCTGGAGATGAGGCTACAGATCA
AACAGATTCTTTGAAGAAACGTACAGCTTCTGTCACTCGTGCTACTCTCC
AGAGCCCTCCAAGTTTGCCCAGGTTTGCTGAATTTCAGTCTGCTCGGGGA
AACTCTTTAACCATGCAGCATGGTTCTAGCAGTCAAAAGTGTGGTGTCCT
CTTGAGGAGTGATAGCATGAGTGCTTCAAAATGTGTGGGTGTCAACGGAA
AATATTGCGACTGAAAAGTGCGTTTTAGGGACAGA
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