CX306394

Overview
NameCX306394
Unique NameCX306394
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length554
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig886 contig Ccv1_Contig886:1..554. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX306394 vs. ExPASy Swiss-Prot
Match: ASP_THECC (21 kDa seed protein OS=Theobroma cacao GN=ASP PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.211e-17
Identity = 54/150 (36.00%), Postives = 83/150 (55.33%), Query Frame = 1
Query:  124 SEPVLDIIGNKVKSTLEYKLIPVLDGAGGFSTHLG--TNGQCPLDVIQLSSPSERGDNLRLLPYDNYK-IVKVSTDVNLRFPVKVSVKPCNEEPLWKVDSYDDPL----IVTGGSEGHPGAETLLNWFKIEKAGNFSCGGVYNIVHCPSV 552
            + PVLD  G+++++ ++Y ++  + GAGG    LG  T   CP  V+Q  S  + G  +     D+   +V+VSTDVN+ F V +  + C+   +W++D+YD+      + T G +G PG  TL +WFKIEKAG       Y    CPSV
Sbjct:   28 NSPVLDTDGDELQTGVQYYVLSSISGAGGGGLALGRATGQSCPEIVVQRRSDLDNGTPVIFSNADSKDDVVRVSTDVNIEF-VPIRDRLCSTSTVWRLDNYDNSAGKWWVTTDGVKGEPGPNTLCSWFKIEKAGVLG----YKFRFCPSV 172          
BLAST of CX306394 vs. ExPASy Swiss-Prot
Match: MIRA_RICDU (Miraculin OS=Richadella dulcifica PE=1 SV=3)

HSP 1 Score: 87.8113 bits (216), Expect = 3.771e-17
Identity = 60/164 (36.59%), Postives = 88/164 (53.66%), Query Frame = 1
Query:  100 PLLGISSNS-EPVLDIIGNKVKSTLEYKLIPVLDGAGGFSTHLGT--NGQ--CPLDVIQLSSPSERGDNLRLLPYDNYK--IVKVSTDVNLRFPVKVSVKPCN--EEPLWKVDSYDDP----LIVTGGSEGHPGAETLLNWFKIEKAGNFSCGGVYNIVHCPSV 552
            PLL  + ++  PVLDI G K+++   Y ++PVL   GG  T   T  NG   CP  V+Q     +    L   P +N K  +V+VSTD+N+ F    +  PC      +W++D YD+      +  GG +G+PG ET+ +WFKIE+   F   G Y +V CP+V
Sbjct:   24 PLLSAADSAPNPVLDIDGEKLRTGTNYYIVPVLRDHGGGLTVSATTPNGTFVCPPRVVQTRKEVDHDRPLAFFP-ENPKEDVVRVSTDLNINFS---AFMPCRWTSSTVWRLDKYDESTGQYFVTIGGVKGNPGPETISSWFKIEE---FCGSGFYKLVFCPTV 180          
BLAST of CX306394 vs. ExPASy Swiss-Prot
Match: LSPI_CARPA (Latex serine proteinase inhibitor OS=Carica papaya PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 6.230e-12
Identity = 50/150 (33.33%), Postives = 78/150 (52.00%), Query Frame = 1
Query:  127 EPVLDIIGNKVKSTLEYKLIPVLDGAGGFSTHL---GTNGQCPLDVIQLSSPSERGDNLRLLPYDNYK--IVKVSTDVNLRFPVKVSVKPCNEEPLWKVDSYDDPL---IVTGGSEGHPGAETLLNWFKIEKAG-NFSCGGVYNIVHCPS 549
            +P++DI G  V   ++Y ++  + GAGG    +   G   +CPL V+Q   P + G+ +      N K  IV  S D+N++F + ++   CNE   WKVD +   +   +  GG +G+ G E+  + FKI+KAG  FS    Y    CPS
Sbjct:    4 KPIVDIDGKPVLYGVDYFVVSAIWGAGGGGLTVYGPGNKKKCPLSVVQ--DPFDNGEPIIFSAIKNVKDNIVFESVDLNVKFNITIN---CNETTAWKVDRFPGVIGWTVTLGGEKGYHGFESTHSMFKIKKAGLPFS----YKFHFCPS 144          
The following BLAST results are available for this feature:
BLAST of CX306394 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
ASP_THECC2.211e-1736.0021 kDa seed protein OS=Theobroma cacao GN=ASP PE=2... [more]
MIRA_RICDU3.771e-1736.59Miraculin OS=Richadella dulcifica PE=1 SV=3[more]
LSPI_CARPA6.230e-1233.33Latex serine proteinase inhibitor OS=Carica papaya... [more]
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Properties
Property NameValue
Genbank descriptionC18017F01Rv Drought1 Citrus clementina cDNA clone C18017F01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX306394 ID=CX306394; Name=CX306394; organism=Citrus clementina; type=EST; length=554bp
GCGGGGACAACAAACAGCAGCCAGCCTTCCAGTGGCAAAAAAATGAAGAC
TTCATTGATAACAACACTCTCCTTCCTTATCCTTACCTTGGCCACGCAGC
CTCTATTGGGCATCTCATCAAACTCTGAACCTGTCTTAGATATCATTGGC
AACAAGGTCAAATCCACCCTCGAGTATAAACTTATCCCAGTCCTAGATGG
CGCCGGTGGATTCAGCACACACCTAGGCACAAATGGACAGTGTCCCTTGG
ACGTTATCCAATTAAGTTCTCCTAGCGAAAGGGGAGATAATTTAAGATTA
CTTCCGTACGACAATTACAAAATTGTCAAGGTATCCACTGATGTCAACCT
GAGATTCCCCGTAAAAGTTTCTGTTAAGCCCTGTAATGAAGAACCATTGT
GGAAAGTTGATAGCTATGACGATCCACTAATTGTAACCGGCGGAAGTGAG
GGCCACCCAGGAGCTGAAACGTTGCTAAATTGGTTTAAGATTGAGAAAGC
TGGAAATTTTTCATGTGGTGGTGTATACAATATTGTCCATTGTCCGAGTG
TCTG
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