CX306424

Overview
NameCX306424
Unique NameCX306424
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length545
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig891 contig Ccv1_Contig891:1..544. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX306424 vs. ExPASy Swiss-Prot
Match: GSTU6_ORYSJ (Probable glutathione S-transferase GSTU6 OS=Oryza sativa subsp. japonica GN=GSTU6 PE=2 SV=2)

HSP 1 Score: 157.147 bits (396), Expect = 4.856e-38
Identity = 81/165 (49.09%), Postives = 106/165 (64.24%), Query Frame = -1
Query:   66 SLIIVEYVDEAWSSSG---PSILPSDPYDRAVARFWAAYVDEKLFPA-LKRIGSADGAEAKEAAIEQLIEGLVLLEDAFVKCSKGKPFFGGSQIGFLDTAFGCYLGWVRVTEKMIEVKLLDEVKTPGLFKWAERFCADAAVKDVMP-ETDKLAEFAKVLAKLRAS 545
            S +IV+Y+DE W       PS++PSDPY+RAVARFWAAYVD+K+ PA L  +  +   E + AA+ Q +  L  LE AF +CSKGKPFFGG  +GF+D   G YLGW    +K+I  +L+D  +TP L  W ERF A  A K V+P + DKL EF + L +  AS
Sbjct:   69 SQVIVQYIDEVWPGGAGGRPSVMPSDPYERAVARFWAAYVDDKVRPAWLAILFGSKTEEERAAAVAQAVAALETLEGAFGECSKGKPFFGGDGVGFVDVVLGGYLGWFTAIDKLIGRRLIDPARTPALAAWEERFRATDAAKGVVPDDADKLLEFRQTLLRWSAS 233          
BLAST of CX306424 vs. ExPASy Swiss-Prot
Match: GSTX2_MAIZE (Probable glutathione S-transferase BZ2 OS=Zea mays GN=BZ2 PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 8.591e-27
Identity = 63/161 (39.13%), Postives = 94/161 (58.39%), Query Frame = -1
Query:   84 SLIIVEYVDEAWSSSGPS-----ILPSDPYDRAVARFWAAYVDEKLFPALKRIGSADGAEAKEAAIEQLIEGLVLLEDAFVKCSKGKPFFGGSQI--GFLDTAFGCYLGWVRVTEKMIEVKLLDEVKTPGLFKWAERFCADAAVKDVMPETDKLAEFAKVL 545
            S +IV+Y+++    SG +     +LP DPY+RA+ RFW A++D+K +PAL  +  A    A+  A E     L LLE+AF   S G+ FF G     G LD A GC+L  +R  E++  + L+D   TP L  W++RF A  A K V+P+T+K+ +F + L
Sbjct:   65 SAVIVQYIEDVARESGGAEAGSLLLPDDPYERAMHRFWTAFIDDKFWPALDAVSLAPTPGARAQAAEDTRAALSLLEEAFKDRSNGRAFFSGGDAAPGLLDLALGCFLPALRACERLHGLSLIDASATPLLDGWSQRFAAHPAAKRVLPDTEKVVQFTRFL 225          
BLAST of CX306424 vs. ExPASy Swiss-Prot
Match: GSTX4_TOBAC (Probable glutathione S-transferase OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 3.056e-24
Identity = 62/154 (40.26%), Postives = 85/154 (55.19%), Query Frame = -1
Query:   84 SLIIVEYVDEAWSSSGPSILPSDPYDRAVARFWAAYVDEKLFPALKRIGSADGAEAKEAAIEQLIEGLVLLEDAFVKCSKGKPFFGGSQIGFLDTAFGCYLGWVRVTEKMIEVKLLDEVKTPGLFKWAERFCADAAVKDVMPETDKLAEFAKVL 545
            S+I VEY++E W    P++LPSDPYDRA ARFWA Y+D+KL+   +++ +  G E +EAA +  IE L +LE A       KP+FGG   GF+D A   Y  W    E         E + P    WA+R     +V   +P+  K+ EF KVL
Sbjct:   68 SIIAVEYIEEVWKDKAPNLLPSDPYDRAQARFWADYIDKKLYDFGRKLWTTKG-EEQEAAKKDFIECLKVLEGAL----GDKPYFGGESFGFVDIALIGYYSWFYAYETF--GNFSTEAECPKFVAWAKRCMQRESVAKSLPDQPKVLEFVKVL 214          
BLAST of CX306424 vs. ExPASy Swiss-Prot
Match: GSTXC_TOBAC (Probable glutathione S-transferase parC OS=Nicotiana tabacum GN=PARC PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 8.891e-24
Identity = 61/154 (39.61%), Postives = 85/154 (55.19%), Query Frame = -1
Query:   84 SLIIVEYVDEAWSSSGPSILPSDPYDRAVARFWAAYVDEKLFPALKRIGSADGAEAKEAAIEQLIEGLVLLEDAFVKCSKGKPFFGGSQIGFLDTAFGCYLGWVRVTEKMIEVKLLDEVKTPGLFKWAERFCADAAVKDVMPETDKLAEFAKVL 545
            S+I VEY++E W    PS+LPSDPYDRA ARFWA Y+D+KL+   +++ +  G E +EAA +  IE L +LE A       +P+FGG   GF+D A   +  W    E         E + P    WA+R     +V   +P+  K+ EF KVL
Sbjct:   68 SIIAVEYIEEVWKDKAPSLLPSDPYDRAQARFWADYIDKKLYDFGRKLWATKG-EEQEAAKKDFIECLKVLEGAL----GDRPYFGGESFGFVDIALIGFYSWFYAYETF--GNFSTEAECPKFVAWAKRCMQRESVAKSLPDQPKVLEFVKVL 214          
BLAST of CX306424 vs. ExPASy Swiss-Prot
Match: GSTX6_SOYBN (Probable glutathione S-transferase OS=Glycine max GN=HSP26-A PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 3.735e-22
Identity = 54/152 (35.53%), Postives = 86/152 (56.58%), Query Frame = -1
Query:   90 SLIIVEYVDEAWSSSGPSILPSDPYDRAVARFWAAYVDEKLFPALKRIGSADGAEAKEAAIEQLIEGLVLLEDAFVKCSKGKPFFGGSQIGFLDTAFGCYLGWVRVTEKMIEVKLLDEVKTPGLFKWAERFCADAAVKDVMPETDKLAEFAK 545
            SL+IVEY+DE W ++   ILPSDPY RA+ARFW+ ++D+K+  A+ +       + +E  +E+  E L  LE+      K K FFGG + G +D A      W+ + +++  ++L    K P L+KW++ F     V +V+P  D L  + K
Sbjct:   70 SLVIVEYIDETWKNN--PILPSDPYQRALARFWSKFIDDKIVGAVSKSVFTVDEKEREKNVEETYEALQFLENEL----KDKKFFGGEEFGLVDIAAVFIAFWIPIFQEIAGLQLFTSEKFPILYKWSQEFLNHPFVHEVLPPRDPLFAYFK 215          
BLAST of CX306424 vs. ExPASy Swiss-Prot
Match: GSTX1_TOBAC (Probable glutathione S-transferase OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.329e-19
Identity = 57/150 (38.00%), Postives = 85/150 (56.67%), Query Frame = -1
Query:   96 SLIIVEYVDEAWSSSGPSILPSDPYDRAVARFWAAYVDEKLFPALKRIGSADGAEAKEAAIEQLIEGLVLLEDAFVKCSKGKPFFGGSQIGFLDTAFGCYLGWVRVTEKMIEVKLLDEVKTPGLFKWAERFCADAAVKDVMPETDKLAEF 545
            S++I+EY+DE +   GPSILP DPYDRA+ARFWA ++D+K+ PA+ +     G E +E   E++ E L +L++      K K FF G + GF D A      W+ V E+   V L+   K P   KW   +   + +K+ +P  D+L  F
Sbjct:   66 SMVILEYIDETFE--GPSILPKDPYDRALARFWAKFLDDKV-PAVVKTFLRKG-EEQEKDKEEVCEMLKVLDNEL----KDKKFFVGDKFGFADIAANLVAFWLGVFEEASGVVLVTSEKFPNFCKWRGEYINCSQIKESLPPRDELLAF 207          
BLAST of CX306424 vs. ExPASy Swiss-Prot
Match: GSTX2_TOBAC (Probable glutathione S-transferase OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 3.272e-18
Identity = 54/150 (36.00%), Postives = 80/150 (53.33%), Query Frame = -1
Query:   96 SLIIVEYVDEAWSSSGPSILPSDPYDRAVARFWAAYVDEKLFPALKRIGSADGAEAKEAAIEQLIEGLVLLEDAFVKCSKGKPFFGGSQIGFLDTAFGCYLGWVRVTEKMIEVKLLDEVKTPGLFKWAERFCADAAVKDVMPETDKLAEF 545
            S+II+EY+DE +   GPSILP DPYDRA+ARFWA ++D+K+   +         E +E   E++ E L +L++      K K FF G + GF D A      W+ V E+     L+   K P   KW + +   + V + +P  D+L  F
Sbjct:   66 SMIILEYIDETFE--GPSILPKDPYDRALARFWAKFLDDKVAAVVNTFFRK--GEEQEKGKEEVYEMLKVLDNEL----KDKKFFAGDKFGFADIAANLVGFWLGVFEEGYGDVLVKSEKFPNFSKWRDEYINCSQVNESLPPRDELLAF 207          
BLAST of CX306424 vs. ExPASy Swiss-Prot
Match: GSTXA_TOBAC (Probable glutathione S-transferase parA OS=Nicotiana tabacum GN=PARA PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 5.582e-18
Identity = 54/150 (36.00%), Postives = 78/150 (52.00%), Query Frame = -1
Query:   96 SLIIVEYVDEAWSSSGPSILPSDPYDRAVARFWAAYVDEKLFPALKRIGSADGAEAKEAAIEQLIEGLVLLEDAFVKCSKGKPFFGGSQIGFLDTAFGCYLGWVRVTEKMIEVKLLDEVKTPGLFKWAERFCADAAVKDVMPETDKLAEF 545
            SL I+EY+DE W    P +LPSDPY+R+ ARFWA Y+D+K++   +R+ S  G E +E A ++ IE L  LE         K +FGG  +GF+D A   +  W    E      +  E + P L  WA+      +V   +P   K+  F
Sbjct:   68 SLNILEYIDEVWHDKCP-LLPSDPYERSQARFWADYIDKKIYSTGRRVWSGKG-EDQEEAKKEFIEILKTLEGEL----GNKTYFGGDNLGFVDVALVPFTSWFYSYETCANFSI--EAECPKLVVWAKTCMESESVSKSLPHPHKIYGF 209          
BLAST of CX306424 vs. ExPASy Swiss-Prot
Match: GSTX3_TOBAC (Probable glutathione S-transferase OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 5.582e-18
Identity = 56/164 (34.15%), Postives = 87/164 (53.05%), Query Frame = -1
Query:   69 SLIIVEYVDEAWSSSGPSILPSDPYDRAVARFWAAYVDEKLFPALKRIGSADGAEAKEAAIEQLIEGLVLLEDAFVKCSKGKPFFGGSQIGFLDTAFGCYLGWVRVTEKMIEVKLLDEVKTPGLFKWAERFCADAAVKDVMPETDKL-----AEFAKVLAKLRA 545
            S++I+EY+DE +   GPSILP DPYDRA+ARFW+ ++ +K+   +         E +E   E++ E L +L++      K K FF G + GF D A      W+ V E+   V L+   K P   +W + +   + VK+ +P  D+L     A F  V+A + A
Sbjct:   66 SMVILEYIDETFE--GPSILPKDPYDRALARFWSKFLGDKVAAVVNTFFRK--GEEQEKGKEEVYEMLKVLDNEL----KDKKFFVGDKFGFADIAANLVGFWLGVFEEGYGVVLVTSEKFPNFSRWRDEYINCSQVKESLPSRDELLAFFRARFQAVVASISA 221          
BLAST of CX306424 vs. ExPASy Swiss-Prot
Match: GSTX3_SOYBN (Glutathione S-transferase 3 OS=Glycine max GN=GST3 PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 8.060e-17
Identity = 48/147 (32.65%), Postives = 75/147 (51.02%), Query Frame = -1
Query:  105 SLIIVEYVDEAWSSSGPSILPSDPYDRAVARFWAAYVDEKLFPALKRIGSADGAEAKEAAIEQLIEGLVLLEDAFVKCSKGKPFFGGSQIGFLDTAFGCYLGWVRVTEKMIEVKLLDEVKTPGLFKWAERFCADAAVKDVMPETDKL 545
            S IIV+Y+DE W+   P ++PSDPY R+ ARFW  Y+D+K++   K++  + G E +E   ++LI     LE+        KPF+G    GF+D     +  W    E     K+  E + P L  W +R      V + +P+  K+
Sbjct:   67 SAIIVQYIDEVWNDKSP-LMPSDPYKRSQARFWVDYIDKKIYDTWKKMWLSKGEEHEEGK-KELISIFKQLEETLT----DKPFYGDDTFGFVDLCLITFSSWFYTYETYGNFKM--EEECPKLMAWVKRCMERETVSNTLPDAKKV 205          
The following BLAST results are available for this feature:
BLAST of CX306424 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
GSTU6_ORYSJ4.856e-3849.09Probable glutathione S-transferase GSTU6 OS=Oryza ... [more]
GSTX2_MAIZE8.591e-2739.13Probable glutathione S-transferase BZ2 OS=Zea mays... [more]
GSTX4_TOBAC3.056e-2440.26Probable glutathione S-transferase OS=Nicotiana ta... [more]
GSTXC_TOBAC8.891e-2439.61Probable glutathione S-transferase parC OS=Nicotia... [more]
GSTX6_SOYBN3.735e-2235.53Probable glutathione S-transferase OS=Glycine max ... [more]
GSTX1_TOBAC1.329e-1938.00Probable glutathione S-transferase OS=Nicotiana ta... [more]
GSTX2_TOBAC3.272e-1836.00Probable glutathione S-transferase OS=Nicotiana ta... [more]
GSTXA_TOBAC5.582e-1836.00Probable glutathione S-transferase parA OS=Nicotia... [more]
GSTX3_TOBAC5.582e-1834.15Probable glutathione S-transferase OS=Nicotiana ta... [more]
GSTX3_SOYBN8.060e-1732.65Glutathione S-transferase 3 OS=Glycine max GN=GST3... [more]

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Properties
Property NameValue
Genbank descriptionC18017H07Rv Drought1 Citrus clementina cDNA clone C18017H07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX306424 ID=CX306424; Name=CX306424; organism=Citrus clementina; type=EST; length=545bp
TTTTTTTTTTTTTTTTTTTTGGTGCCCCTCCAAGCACAGAATTAAGCTTC
TTAATTCCATTTGCCAGAAGCTCTGAGTTTGGCAAGAACCTTAGCAAACT
CTGCAAGCTTATCAGTCTCAGGCATAACATCTTTGACAGCGGCATCAGCA
CAGAATCTCTCAGCCCATTTGAACAGTCCAGGAGTTTTGACTTCATCAAG
GAGCTTCACCTCAATCATTTTCTCTGTCACTCTCACCCATCCCAAGTAGC
AACCAAATGCAGTGTCAAGAAACCCAATTTGGCTTCCACCAAAGAAAGGC
TTCCCTTTGCTACACTTAACAAAAGCATCCTCCAGCAAAACCAAGCCTTC
AATCAATTGCTCAATCGCAGCTTCCTTAGCTTCCGCTCCATCTGCACTAC
CAATGCGTTTCAAGGCAGGGAACAACTTCTCATCAACATAAGCGGCCCAG
AAACGAGCAACGGCACGGTCATAAGGATCAGAAGGAAGAATAGAGGGGCC
TGAAGAGGACCAAGCCTCATCCACGTACTCGACAATGATGAGAGA
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