CX307750

Overview
NameCX307750
Unique NameCX307750
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length379
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX307750 vs. ExPASy Swiss-Prot
Match: CAHC_TOBAC (Carbonic anhydrase, chloroplastic OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 2.762e-37
Identity = 74/105 (70.48%), Postives = 89/105 (84.76%), Query Frame = 1
Query:   67 REDMANDAYEDAIAGLTKLLSEKSDLEGVAAAKIKQITADLEAA-GSRDIDPVERMKTGFIQFKTEKYEKNPDLYGALAKGQSPKFLVFACSDSRVCPSHILNFQ 378
            RE+MA ++YE AIA L KLLSEK +L  +AAA++ QITA+L+++ GS+  DPVE MK GFI FKTEKYEKNP LYG L+KGQSPKF+VFACSDSRVCPSH+LNFQ
Sbjct:   62 REEMAKESYEQAIAALEKLLSEKGELGPIAAARVDQITAELQSSDGSKPFDPVEHMKAGFIHFKTEKYEKNPALYGELSKGQSPKFMVFACSDSRVCPSHVLNFQ 166          
BLAST of CX307750 vs. ExPASy Swiss-Prot
Match: CAH2_ARATH (Carbonic anhydrase 2 OS=Arabidopsis thaliana GN=CA2 PE=1 SV=2)

HSP 1 Score: 144.821 bits (364), Expect = 1.283e-34
Identity = 71/103 (68.93%), Postives = 84/103 (81.55%), Query Frame = 1
Query:   76 MANDAYEDAIAGLTKLLSEKSDLEGVAAAKIKQITADLEAAGSRD---IDPVERMKTGFIQFKTEKYEKNPDLYGALAKGQSPKFLVFACSDSRVCPSHILNF 375
            M N++YEDAI  L KLL EK DL+ VAAAK+K+ITA+L+AA S D    DPVER+K GF+ FK EKYE NP LYG LAKGQSPK++VFACSDSRVCPSH+L+F
Sbjct:    1 MGNESYEDAIEALKKLLIEKDDLKDVAAAKVKKITAELQAASSSDSKSFDPVERIKEGFVTFKKEKYETNPALYGELAKGQSPKYMVFACSDSRVCPSHVLDF 103          
BLAST of CX307750 vs. ExPASy Swiss-Prot
Match: CAHC_ARATH (Carbonic anhydrase, chloroplastic OS=Arabidopsis thaliana GN=CA1 PE=1 SV=2)

HSP 1 Score: 137.117 bits (344), Expect = 2.676e-32
Identity = 68/106 (64.15%), Postives = 83/106 (78.30%), Query Frame = 1
Query:   70 EDMANDAYEDAIAGLTKLLSEKSDLEGVAAAKIKQITADLEAAGSRD---IDPVERMKTGFIQFKTEKYEKNPDLYGALAKGQSPKFLVFACSDSRVCPSHILNFQ 378
            E+M  +AY++AI  L KLL EK +L+ VAAAK++QITA L+   S D    DPVE +K GFI+FK EKYE NP LYG LAKGQSPK++VFACSDSRVCPSH+L+FQ
Sbjct:   76 EEMGTEAYDEAIEALKKLLIEKEELKTVAAAKVEQITAALQTGTSSDKKAFDPVETIKQGFIKFKKEKYETNPALYGELAKGQSPKYMVFACSDSRVCPSHVLDFQ 181          
BLAST of CX307750 vs. ExPASy Swiss-Prot
Match: CAHC_SPIOL (Carbonic anhydrase, chloroplastic OS=Spinacia oleracea PE=1 SV=2)

HSP 1 Score: 134.806 bits (338), Expect = 1.328e-31
Identity = 68/105 (64.76%), Postives = 84/105 (80.00%), Query Frame = 1
Query:   67 REDMANDAYEDAIAGLTKLLSEKSDLEGVAAAKIKQITADLEAAGSRDID-PVERMKTGFIQFKTEKYEKNPDLYGALAKGQSPKFLVFACSDSRVCPSHILNFQ 378
            +EDMA   YE+AIA L KLLSEK +LE  AA+K+ QIT++L   G+     PV+R+K GFI+FK EKYEKNP LYG L+KGQ+PKF+VFACSDSRVCPSH+L+FQ
Sbjct:   63 KEDMA---YEEAIAALKKLLSEKGELENEAASKVAQITSELADGGTPSASYPVQRIKEGFIKFKKEKYEKNPALYGELSKGQAPKFMVFACSDSRVCPSHVLDFQ 164          
BLAST of CX307750 vs. ExPASy Swiss-Prot
Match: CAHX_FLABR (Carbonic anhydrase OS=Flaveria brownii PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 3.271e-30
Identity = 64/100 (64.00%), Postives = 80/100 (80.00%), Query Frame = 1
Query:   82 NDAYEDAIAGLTKLLSEKSDLEGVAAAKIKQITADLEAAGSR-DIDPVERMKTGFIQFKTEKYEKNPDLYGALAKGQSPKFLVFACSDSRVCPSHILNFQ 378
            N++YE+AI  L K+L EK +LE VAAA+I QITA   A  ++   DPVER+K+GF++FKTEK+  NP LY  LAKGQSPKF+VFACSDSRVCPSH+L+FQ
Sbjct:   76 NESYEEAIDALKKMLIEKGELEPVAAARIDQITAQAAAPDTKAPFDPVERIKSGFVKFKTEKFVTNPALYDELAKGQSPKFMVFACSDSRVCPSHVLDFQ 175          
BLAST of CX307750 vs. ExPASy Swiss-Prot
Match: CAH1_FLALI (Carbonic anhydrase 1 OS=Flaveria linearis PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 3.271e-30
Identity = 64/100 (64.00%), Postives = 80/100 (80.00%), Query Frame = 1
Query:   82 NDAYEDAIAGLTKLLSEKSDLEGVAAAKIKQITADLEAAGSR-DIDPVERMKTGFIQFKTEKYEKNPDLYGALAKGQSPKFLVFACSDSRVCPSHILNFQ 378
            N++YE+AI  L K+L EK +LE VAAA+I QITA   A  ++   DPVER+K+GF++FKTEK+  NP LY  LAKGQSPKF+VFACSDSRVCPSH+L+FQ
Sbjct:   76 NESYEEAIDALKKMLIEKGELEPVAAARIDQITAQAAAPDTKAPFDPVERIKSGFVKFKTEKFVTNPALYDELAKGQSPKFMVFACSDSRVCPSHVLDFQ 175          
BLAST of CX307750 vs. ExPASy Swiss-Prot
Match: CAHX_FLAPR (Carbonic anhydrase OS=Flaveria pringlei PE=2 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 4.272e-30
Identity = 64/100 (64.00%), Postives = 80/100 (80.00%), Query Frame = 1
Query:   82 NDAYEDAIAGLTKLLSEKSDLEGVAAAKIKQITADLEAAGSR-DIDPVERMKTGFIQFKTEKYEKNPDLYGALAKGQSPKFLVFACSDSRVCPSHILNFQ 378
            N++YE+AI  L K+L EK +LE VAAA+I QITA   A  ++   DPVER+K+GF++FKTEK+  NP LY  LAKGQSPKF+VFACSDSRVCPSH+L+FQ
Sbjct:   75 NESYEEAIDALKKMLIEKGELEPVAAARIDQITAQAAAPDTKAPFDPVERIKSGFVKFKTEKFVTNPVLYDELAKGQSPKFMVFACSDSRVCPSHVLDFQ 174          
BLAST of CX307750 vs. ExPASy Swiss-Prot
Match: CAHX_FLABI (Carbonic anhydrase OS=Flaveria bidentis PE=2 SV=2)

HSP 1 Score: 127.487 bits (319), Expect = 2.120e-29
Identity = 63/100 (63.00%), Postives = 78/100 (78.00%), Query Frame = 1
Query:   82 NDAYEDAIAGLTKLLSEKSDLEGVAAAKIKQITADLEAAGSR-DIDPVERMKTGFIQFKTEKYEKNPDLYGALAKGQSPKFLVFACSDSRVCPSHILNFQ 378
            N++YE+AI  L K L EK +LE VAA +I QITA   A  ++   DPVER+K+GF++FKTEK+  NP LY  LAKGQSPKF+VFACSDSRVCPSH+L+FQ
Sbjct:   76 NESYEEAIDALKKTLIEKGELEPVAATRIDQITAQAAAPDTKAPFDPVERIKSGFVKFKTEKFVTNPALYDELAKGQSPKFMVFACSDSRVCPSHVLDFQ 175          
BLAST of CX307750 vs. ExPASy Swiss-Prot
Match: CAHC_PEA (Carbonic anhydrase, chloroplastic OS=Pisum sativum PE=1 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 1.052e-28
Identity = 65/108 (60.19%), Postives = 79/108 (73.15%), Query Frame = 1
Query:   67 REDMANDAYEDAIAGLTKLLSEKSDLEGVAAAKIKQITADLEAAGSRDIDPV----ERMKTGFIQFKTEKYEKNPDLYGALAKGQSPKFLVFACSDSRVCPSHILNFQ 378
            RE+M    Y++AI  L KLL EK++L+  AA K++QITA L    S D  P     ER+KTGF+ FK EKY+KNP LYG LAKGQSP F+VFACSDSRVCPSH+L+FQ
Sbjct:   67 REEMGK-GYDEAIEELQKLLREKTELKATAAEKVEQITAQLGTTSSSDGIPKSEASERIKTGFLHFKKEKYDKNPALYGELAKGQSPPFMVFACSDSRVCPSHVLDFQ 173          
BLAST of CX307750 vs. ExPASy Swiss-Prot
Match: CAHC_HORVU (Carbonic anhydrase, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.745e-13
Identity = 32/53 (60.38%), Postives = 41/53 (77.36%), Query Frame = 1
Query:  220 VERMKTGFIQFKTEKYEKNPDLYGALAKGQSPKFLVFACSDSRVCPSHILNFQ 378
            VER+KTGF +FKTE Y+K PD +  L  GQ+PK++VFAC+DSRVCPS  L  +
Sbjct:  127 VERLKTGFEKFKTEVYDKKPDFFEPLKAGQAPKYMVFACADSRVCPSVTLGLE 179          
The following BLAST results are available for this feature:
BLAST of CX307750 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
CAHC_TOBAC2.762e-3770.48Carbonic anhydrase, chloroplastic OS=Nicotiana tab... [more]
CAH2_ARATH1.283e-3468.93Carbonic anhydrase 2 OS=Arabidopsis thaliana GN=CA... [more]
CAHC_ARATH2.676e-3264.15Carbonic anhydrase, chloroplastic OS=Arabidopsis t... [more]
CAHC_SPIOL1.328e-3164.76Carbonic anhydrase, chloroplastic OS=Spinacia oler... [more]
CAHX_FLABR3.271e-3064.00Carbonic anhydrase OS=Flaveria brownii PE=2 SV=1[more]
CAH1_FLALI3.271e-3064.00Carbonic anhydrase 1 OS=Flaveria linearis PE=2 SV=... [more]
CAHX_FLAPR4.272e-3064.00Carbonic anhydrase OS=Flaveria pringlei PE=2 SV=1[more]
CAHX_FLABI2.120e-2963.00Carbonic anhydrase OS=Flaveria bidentis PE=2 SV=2[more]
CAHC_PEA1.052e-2860.19Carbonic anhydrase, chloroplastic OS=Pisum sativum... [more]
CAHC_HORVU4.745e-1360.38Carbonic anhydrase, chloroplastic OS=Hordeum vulga... [more]

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Properties
Property NameValue
Genbank descriptionC20001D05SK OF2 Citrus clementina cDNA clone C20001D05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX307750 ID=CX307750; Name=CX307750; organism=Citrus clementina; type=EST; length=379bp
GTCCGAGATCGTGAAAAGAAGCGAGCAAGTTGAAGTCGGCAGAATCCCGG
AGAAATTGAAAAGCAGAGAGAAGACATGGCAAACGACGCGTACGAGGATG
CCATTGCAGGACTGACCAAGCTCCTCAGCGAGAAAAGCGACCTCGAAGGA
GTCGCCGCTGCGAAAATCAAGCAGATAACGGCCGATTTAGAAGCGGCCGG
TTCGAGGGACATTGACCCGGTGGAGAGGATGAAAACCGGGTTCATTCAAT
TTAAGACAGAGAAATACGAGAAGAATCCTGATTTGTACGGTGCACTGGCC
AAAGGCCAAAGCCCCAAGTTTCTGGTATTTGCATGCTCAGACTCTCGAGT
ATGTCCATCCCATATCCTCAATTTTCAAC
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