CX307752

Overview
NameCX307752
Unique NameCX307752
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length383
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX307752 vs. ExPASy Swiss-Prot
Match: CSK2B_ARATH (Casein kinase II subunit beta OS=Arabidopsis thaliana GN=CKB1 PE=1 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 1.156e-35
Identity = 66/70 (94.29%), Postives = 68/70 (97.14%), Query Frame = 2
Query:    2 DIPRSSTVKIYCPKCEDIYYPRSKYQGNIDGAYFGTTFPHLFLMTYGHLKPQKATQSYVPRVFGFKLHKP 211
            D+PRSSTVKIYCPKCEDIYYPRSKYQGNIDGAYFGTTFPHLFLMTYGHLKP KATQ+YV RVFGFKLHKP
Sbjct:  218 DLPRSSTVKIYCPKCEDIYYPRSKYQGNIDGAYFGTTFPHLFLMTYGHLKPAKATQNYVQRVFGFKLHKP 287          
BLAST of CX307752 vs. ExPASy Swiss-Prot
Match: CSK2C_ARATH (Casein kinase II subunit beta' OS=Arabidopsis thaliana GN=CKB2 PE=1 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 1.510e-35
Identity = 65/70 (92.86%), Postives = 68/70 (97.14%), Query Frame = 2
Query:    2 DIPRSSTVKIYCPKCEDIYYPRSKYQGNIDGAYFGTTFPHLFLMTYGHLKPQKATQSYVPRVFGFKLHKP 211
            DIPR+STVKIYCPKCED+YYPRSKYQGNIDGAYFGTTFPHLFLMTYGHLKPQKA+QSY  RVFGFKLHKP
Sbjct:  213 DIPRASTVKIYCPKCEDVYYPRSKYQGNIDGAYFGTTFPHLFLMTYGHLKPQKASQSYTQRVFGFKLHKP 282          
BLAST of CX307752 vs. ExPASy Swiss-Prot
Match: CSK2D_ARATH (Casein kinase II subunit beta-3 OS=Arabidopsis thaliana GN=CKB3 PE=1 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 3.719e-34
Identity = 63/70 (90.00%), Postives = 68/70 (97.14%), Query Frame = 2
Query:    2 DIPRSSTVKIYCPKCEDIYYPRSKYQGNIDGAYFGTTFPHLFLMTYGHLKPQKATQSYVPRVFGFKLHKP 211
            DIPRSSTVKIYCPKCEDI YPRSK+QGNIDGAYFGTTFPHLFLMTYG+LKPQK TQSYVP++FGFK+HKP
Sbjct:  207 DIPRSSTVKIYCPKCEDISYPRSKFQGNIDGAYFGTTFPHLFLMTYGNLKPQKPTQSYVPKIFGFKVHKP 276          
BLAST of CX307752 vs. ExPASy Swiss-Prot
Match: CSK2E_ARATH (Putative casein kinase II subunit beta-4 OS=Arabidopsis thaliana GN=At2g44680 PE=2 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 1.563e-32
Identity = 59/68 (86.76%), Postives = 65/68 (95.59%), Query Frame = 2
Query:    2 DIPRSSTVKIYCPKCEDIYYPRSKYQGNIDGAYFGTTFPHLFLMTYGHLKPQKATQSYVPRVFGFKLH 205
            DIPRSSTVKIYCPKCEDIYYPRSKYQGNIDGAYFGTTFPHLFLM YG++KPQK  Q+YVP++FGFK+H
Sbjct:  213 DIPRSSTVKIYCPKCEDIYYPRSKYQGNIDGAYFGTTFPHLFLMAYGNMKPQKPAQNYVPKIFGFKVH 280          
BLAST of CX307752 vs. ExPASy Swiss-Prot
Match: CK2B_DICDI (Casein kinase II subunit beta OS=Dictyostelium discoideum GN=csnk2b PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.981e-19
Identity = 38/69 (55.07%), Postives = 51/69 (73.91%), Query Frame = 2
Query:    2 DIPRSSTVKIYCPKCEDIYYPRSKYQGNIDGAYFGTTFPHLFLMTYGHLKPQKATQSYVPRVFGFKLHK 208
            D+    TVK+YCP+C DI+ P+ +   +IDGAYFGTTFPHL L+TY  L P K  Q Y+P+++GFK+HK
Sbjct:  138 DMQGVDTVKVYCPRCNDIFNPKYRRHSHIDGAYFGTTFPHLLLITYPELIPTKPPQQYIPKIYGFKIHK 206          
BLAST of CX307752 vs. ExPASy Swiss-Prot
Match: CSK2C_YEAST (Casein kinase II subunit beta' OS=Saccharomyces cerevisiae GN=CKB2 PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.190e-18
Identity = 37/69 (53.62%), Postives = 50/69 (72.46%), Query Frame = 2
Query:    2 DIPRSSTVKIYCPKCEDIYYPRSKYQGNIDGAYFGTTFPHLFLMTYGHLKPQKATQSYVPRVFGFKLHK 208
            DIP    VK+YCP CED+Y P+S    +IDGAYFGT+FP +FL  +  + P+  T+ YVP++FGF+LHK
Sbjct:  156 DIPGIDCVKLYCPSCEDLYIPKSSRHSSIDGAYFGTSFPGMFLQAFPDMVPKHPTKRYVPKIFGFELHK 224          
BLAST of CX307752 vs. ExPASy Swiss-Prot
Match: CSK2B_SCHPO (Casein kinase II subunit beta OS=Schizosaccharomyces pombe GN=ckb1 PE=2 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 2.190e-18
Identity = 35/68 (51.47%), Postives = 50/68 (73.53%), Query Frame = 2
Query:    2 DIPRSSTVKIYCPKCEDIYYPRSKYQGNIDGAYFGTTFPHLFLMTYGHLKPQKATQSYVPRVFGFKLH 205
            DI  + +VK+YCP+CED+Y P+S+   +IDGAYFGT+FPH+    Y  L   K+ + Y+PR+FGFK+H
Sbjct:  130 DIAHTKSVKLYCPRCEDVYTPKSQRHASIDGAYFGTSFPHMLFQVYPELAVPKSQERYIPRIFGFKVH 197          
BLAST of CX307752 vs. ExPASy Swiss-Prot
Match: CSK2C_DROME (Casein kinase II subunit beta' OS=Drosophila melanogaster GN=CkIIbeta2 PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.854e-17
Identity = 34/68 (50.00%), Postives = 48/68 (70.59%), Query Frame = 2
Query:    2 DIPRSSTVKIYCPKCEDIYYPRSKYQGNIDGAYFGTTFPHLFLMTYGHLKPQKATQSYVPRVFGFKLH 205
            D P    V+IYCPKC D+Y P++    N+DGA+FGT FPH+F M     +P++A Q +VPR++GFK+H
Sbjct:  124 DNPGEDMVRIYCPKCNDVYIPKASRHSNLDGAFFGTGFPHMFFMEKPDARPKRAKQKFVPRLYGFKIH 191          
BLAST of CX307752 vs. ExPASy Swiss-Prot
Match: CSK2C_NEUCR (Casein kinase II subunit beta-2 OS=Neurospora crassa GN=ckb-2 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 7.046e-17
Identity = 35/68 (51.47%), Postives = 47/68 (69.12%), Query Frame = 2
Query:    2 DIPRSSTVKIYCPKCEDIYYPRSKYQGNIDGAYFGTTFPHLFLMTYGHLKPQKATQSYVPRVFGFKLH 205
            D+P S  VK+YC +CEDIY P+S     IDGAYFGT+F ++F   Y  L P K+ + Y+PR +GFK+H
Sbjct:  130 DVPNSKPVKLYCARCEDIYNPKSSRHAAIDGAYFGTSFHNIFFQVYPTLVPAKSVERYIPRCYGFKVH 197          
BLAST of CX307752 vs. ExPASy Swiss-Prot
Match: CSK2B_DROME (Casein kinase II subunit beta OS=Drosophila melanogaster GN=CkIIbeta PE=1 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 7.046e-17
Identity = 34/68 (50.00%), Postives = 47/68 (69.12%), Query Frame = 2
Query:    2 DIPRSSTVKIYCPKCEDIYYPRSKYQGNIDGAYFGTTFPHLFLMTYGHLKPQKATQSYVPRVFGFKLH 205
            DIP  + VK YCPKC D+Y P+S    + DGAYFGT FPH+  M +   +P++ T  +VPR++GFK+H
Sbjct:  126 DIPGEAMVKTYCPKCIDVYTPKSSRHHHTDGAYFGTGFPHMLFMVHPEYRPKRPTNQFVPRLYGFKIH 193          
The following BLAST results are available for this feature:
BLAST of CX307752 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
CSK2B_ARATH1.156e-3594.29Casein kinase II subunit beta OS=Arabidopsis thali... [more]
CSK2C_ARATH1.510e-3592.86Casein kinase II subunit beta' OS=Arabidopsis thal... [more]
CSK2D_ARATH3.719e-3490.00Casein kinase II subunit beta-3 OS=Arabidopsis tha... [more]
CSK2E_ARATH1.563e-3286.76Putative casein kinase II subunit beta-4 OS=Arabid... [more]
CK2B_DICDI1.981e-1955.07Casein kinase II subunit beta OS=Dictyostelium dis... [more]
CSK2C_YEAST2.190e-1853.62Casein kinase II subunit beta' OS=Saccharomyces ce... [more]
CSK2B_SCHPO2.190e-1851.47Casein kinase II subunit beta OS=Schizosaccharomyc... [more]
CSK2C_DROME1.854e-1750.00Casein kinase II subunit beta' OS=Drosophila melan... [more]
CSK2C_NEUCR7.046e-1751.47Casein kinase II subunit beta-2 OS=Neurospora cras... [more]
CSK2B_DROME7.046e-1750.00Casein kinase II subunit beta OS=Drosophila melano... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC20001D07SK OF2 Citrus clementina cDNA clone C20001D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX307752 ID=CX307752; Name=CX307752; organism=Citrus clementina; type=EST; length=383bp
AGACATCCCTCGTTCAAGTACTGTTAAAATATACTGCCCGAAATGTGAAG
ATATATATTATCCTCGGTCCAAGTACCAAGGCAATATCGATGGTGCTTAT
TTTGGGACTACCTTTCCTCACCTATTTCTAATGACATATGGACACTTAAA
GCCACAAAAGGCTACACAGAGCTATGTCCCAAGGGTTTTTGGTTTCAAGC
TTCACAAGCCCTAACATTGGAGTTGCAAGTTGCGTTAGTGTTGAGAATTC
CGGTGGCAGTGCATTTCACATTTTCTCTTTTGCCTGCCTCTCTACTGAAA
GTATGCATGGCCCCAACAAGTGAGGTAAAGCGGGGTACTTCTGAATATAT
TACAATTGATTCGCATATGGATATGTTTAAATG
back to top