CX307753

Overview
NameCX307753
Unique NameCX307753
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length372
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX307753 vs. ExPASy Swiss-Prot
Match: RS241_ARATH (40S ribosomal protein S24-1 OS=Arabidopsis thaliana GN=RPS24A PE=2 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 1.166e-56
Identity = 107/118 (90.68%), Postives = 115/118 (97.46%), Query Frame = 3 
Query:   18 MADKAITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLIYDSVESAKKFEPKYRLIRNGLATKVEKSRKQMKERKNRQKK 371
            MA+KA+TIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMY+V+D NAIFVFKFRTHFGGGKS+GFGLIYD+VESAKKFEPKYRLIRNGL TK+EKSRKQ+KERKNR KK
Sbjct:    1 MAEKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFVFKFRTHFGGGKSSGFGLIYDTVESAKKFEPKYRLIRNGLDTKIEKSRKQIKERKNRAKK 118
[Close]
BLAST of CX307753 vs. ExPASy Swiss-Prot
Match: RS242_ARATH (40S ribosomal protein S24-2 OS=Arabidopsis thaliana GN=RPS24B PE=2 SV=2)

HSP 1 Score: 210.69 bits (535), Expect = 1.862e-54
Identity = 102/118 (86.44%), Postives = 113/118 (95.76%), Query Frame = 3 
Query:   18 MADKAITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLIYDSVESAKKFEPKYRLIRNGLATKVEKSRKQMKERKNRQKK 371
            MA+KA+TIRTR FMTNRLL+RKQFVIDVLHPGRANVSKAELKEKLARMY+V+D NAIF FKFRTHFGGGKS+G+GLIYD+VE+AKKFEPKYRLIRNGL TK+EKSRKQ+KERKNR KK
Sbjct:    1 MAEKAVTIRTRNFMTNRLLARKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFCFKFRTHFGGGKSSGYGLIYDTVENAKKFEPKYRLIRNGLDTKIEKSRKQIKERKNRAKK 118
[Close]
BLAST of CX307753 vs. ExPASy Swiss-Prot
Match: RS24_DICDI (40S ribosomal protein S24 OS=Dictyostelium discoideum GN=rps24 PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 8.398e-39
Identity = 76/118 (64.41%), Postives = 95/118 (80.51%), Query Frame = 3 
Query:   18 MADKAITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLIYDSVESAKKFEPKYRLIRNGLATKVEKSRKQMKERKNRQKK 371
            M   A+ +RTRK +TNRLLSRKQFV++V+HPG+ANVSK +LK  +A+++ V D   IF+F F+T FGGGKSTGFGLIYD++E AKK+EPKYRL R GL TK + SRKQ KE+KNR KK
Sbjct:    1 MDKAAVVVRTRKVLTNRLLSRKQFVVEVVHPGKANVSKKDLKTTIAKLHKVADPETIFLFGFKTDFGGGKSTGFGLIYDNLEIAKKYEPKYRLARAGLYTKPQTSRKQRKEKKNRLKK 118
[Close]
BLAST of CX307753 vs. ExPASy Swiss-Prot
Match: RS24_RAT (40S ribosomal protein S24 OS=Rattus norvegicus GN=Rps24 PE=2 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 1.433e-38
Identity = 79/113 (69.91%), Postives = 92/113 (81.42%), Query Frame = 3 
Query:   33 ITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLIYDSVESAKKFEPKYRLIRNGLATKVEKSRKQMKERKNRQKK 371
            +TIRTRKFMTNRLL RKQ VIDVLHPG+A V K E++EKLA+MY     + IFVF FRTHFGGGK+TGFG+IYDS++ AKK EPK+RL R+GL  K + SRKQ KERKNR KK
Sbjct:    5 VTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTTP-DVIFVFGFRTHFGGGKTTGFGMIYDSLDYAKKNEPKHRLARHGLYEKKKTSRKQRKERKNRMKK 116
[Close]
BLAST of CX307753 vs. ExPASy Swiss-Prot
Match: RS24_PONAB (40S ribosomal protein S24 OS=Pongo abelii GN=RPS24 PE=2 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 1.433e-38
Identity = 79/113 (69.91%), Postives = 92/113 (81.42%), Query Frame = 3 
Query:   33 ITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLIYDSVESAKKFEPKYRLIRNGLATKVEKSRKQMKERKNRQKK 371
            +TIRTRKFMTNRLL RKQ VIDVLHPG+A V K E++EKLA+MY     + IFVF FRTHFGGGK+TGFG+IYDS++ AKK EPK+RL R+GL  K + SRKQ KERKNR KK
Sbjct:    5 VTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTTP-DVIFVFGFRTHFGGGKTTGFGMIYDSLDYAKKNEPKHRLARHGLYEKKKTSRKQRKERKNRMKK 116
[Close]
BLAST of CX307753 vs. ExPASy Swiss-Prot
Match: RS24_MOUSE (40S ribosomal protein S24 OS=Mus musculus GN=Rps24 PE=1 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 1.433e-38
Identity = 79/113 (69.91%), Postives = 92/113 (81.42%), Query Frame = 3 
Query:   33 ITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLIYDSVESAKKFEPKYRLIRNGLATKVEKSRKQMKERKNRQKK 371
            +TIRTRKFMTNRLL RKQ VIDVLHPG+A V K E++EKLA+MY     + IFVF FRTHFGGGK+TGFG+IYDS++ AKK EPK+RL R+GL  K + SRKQ KERKNR KK
Sbjct:    5 VTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTTP-DVIFVFGFRTHFGGGKTTGFGMIYDSLDYAKKNEPKHRLARHGLYEKKKTSRKQRKERKNRMKK 116
[Close]
BLAST of CX307753 vs. ExPASy Swiss-Prot
Match: RS24_MESAU (40S ribosomal protein S24 OS=Mesocricetus auratus GN=RPS24 PE=3 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 1.433e-38
Identity = 79/113 (69.91%), Postives = 92/113 (81.42%), Query Frame = 3 
Query:   33 ITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLIYDSVESAKKFEPKYRLIRNGLATKVEKSRKQMKERKNRQKK 371
            +TIRTRKFMTNRLL RKQ VIDVLHPG+A V K E++EKLA+MY     + IFVF FRTHFGGGK+TGFG+IYDS++ AKK EPK+RL R+GL  K + SRKQ KERKNR KK
Sbjct:    5 VTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTTP-DVIFVFGFRTHFGGGKTTGFGMIYDSLDYAKKNEPKHRLARHGLYEKKKTSRKQRKERKNRMKK 116
[Close]
BLAST of CX307753 vs. ExPASy Swiss-Prot
Match: RS24_HUMAN (40S ribosomal protein S24 OS=Homo sapiens GN=RPS24 PE=1 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 1.433e-38
Identity = 79/113 (69.91%), Postives = 92/113 (81.42%), Query Frame = 3 
Query:   33 ITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLIYDSVESAKKFEPKYRLIRNGLATKVEKSRKQMKERKNRQKK 371
            +TIRTRKFMTNRLL RKQ VIDVLHPG+A V K E++EKLA+MY     + IFVF FRTHFGGGK+TGFG+IYDS++ AKK EPK+RL R+GL  K + SRKQ KERKNR KK
Sbjct:    5 VTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTTP-DVIFVFGFRTHFGGGKTTGFGMIYDSLDYAKKNEPKHRLARHGLYEKKKTSRKQRKERKNRMKK 116
[Close]
BLAST of CX307753 vs. ExPASy Swiss-Prot
Match: RS24_BOVIN (40S ribosomal protein S24 OS=Bos taurus GN=RPS24 PE=2 SV=2)

HSP 1 Score: 157.918 bits (398), Expect = 1.433e-38
Identity = 79/113 (69.91%), Postives = 92/113 (81.42%), Query Frame = 3 
Query:   33 ITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLIYDSVESAKKFEPKYRLIRNGLATKVEKSRKQMKERKNRQKK 371
            +TIRTRKFMTNRLL RKQ VIDVLHPG+A V K E++EKLA+MY     + IFVF FRTHFGGGK+TGFG+IYDS++ AKK EPK+RL R+GL  K + SRKQ KERKNR KK
Sbjct:    5 VTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTTP-DVIFVFGFRTHFGGGKTTGFGMIYDSLDYAKKNEPKHRLARHGLYEKKKTSRKQRKERKNRMKK 116
[Close]
BLAST of CX307753 vs. ExPASy Swiss-Prot
Match: RS24_XENLA (40S ribosomal protein S24 OS=Xenopus laevis GN=rps24 PE=2 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 3.191e-38
Identity = 78/113 (69.03%), Postives = 92/113 (81.42%), Query Frame = 3 
Query:   33 ITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLIYDSVESAKKFEPKYRLIRNGLATKVEKSRKQMKERKNRQKK 371
            +TIRTRKFMTNRLL RKQ VIDVLHPG+A V K E++EKLA+MY     + IFVF FRTHFGGGK+TGFG+IYDS++ AKK EPK+RL ++GL  K + SRKQ KERKNR KK
Sbjct:    5 VTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTTP-DVIFVFGFRTHFGGGKTTGFGMIYDSLDYAKKNEPKHRLAKHGLYEKKKTSRKQRKERKNRMKK 116
The following BLAST results are available for this feature:
BLAST of CX307753 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
RS241_ARATH1.166e-5690.6840S ribosomal protein S24-1 OS=Arabidopsis thalian... [more]
RS242_ARATH1.862e-5486.4440S ribosomal protein S24-2 OS=Arabidopsis thalian... [more]
RS24_DICDI8.398e-3964.4140S ribosomal protein S24 OS=Dictyostelium discoid... [more]
RS24_RAT1.433e-3869.9140S ribosomal protein S24 OS=Rattus norvegicus GN=... [more]
RS24_PONAB1.433e-3869.9140S ribosomal protein S24 OS=Pongo abelii GN=RPS24... [more]
RS24_MOUSE1.433e-3869.9140S ribosomal protein S24 OS=Mus musculus GN=Rps24... [more]
RS24_MESAU1.433e-3869.9140S ribosomal protein S24 OS=Mesocricetus auratus ... [more]
RS24_HUMAN1.433e-3869.9140S ribosomal protein S24 OS=Homo sapiens GN=RPS24... [more]
RS24_BOVIN1.433e-3869.9140S ribosomal protein S24 OS=Bos taurus GN=RPS24 P... [more]
RS24_XENLA3.191e-3869.0340S ribosomal protein S24 OS=Xenopus laevis GN=rps... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC20001D08SK OF2 Citrus clementina cDNA clone C20001D08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX307753 ID=CX307753; Name=CX307753; organism=Citrus clementina; type=EST; length=372bp
GATTCATTGAGACATAAATGGCTGACAAGGCGATCACCATCCGAACCAGA
AAGTTCATGACCAACAGGCTTCTGTCGAGGAAACAATTTGTTATCGATGT
TCTGCATCCAGGTCGAGCCAACGTTTCAAAGGCCGAGTTGAAGGAGAAAT
TGGCGAGGATGTATGATGTGAGGGATGCGAATGCTATATTTGTGTTCAAA
TTTCGTACACATTTTGGAGGTGGGAAATCAACTGGGTTTGGCCTCATCTA
TGACTCTGTTGAGAGTGCAAAGAAGTTTGAGCCCAAGTACAGGCTAATCA
GGAATGGACTGGCTACCAAGGTTGAGAAGTCAAGGAAGCAGATGAAAGAG
AGGAAAAACAGGCAAAAGAAGA
back to top