CX307760

Overview
NameCX307760
Unique NameCX307760
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length372
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX307760 vs. ExPASy Swiss-Prot
Match: CSK2B_ARATH (Casein kinase II subunit beta OS=Arabidopsis thaliana GN=CKB1 PE=1 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 4.313e-35
Identity = 65/70 (92.86%), Postives = 67/70 (95.71%), Query Frame = 2
Query:    2 DIPRSSTVKIYCPKCEDIYYPRPKYQGNIDGAYFGTTFPHLFLMTYGHLKPQKATQSYVPRVFGFKLHKP 211
            D+PRSSTVKIYCPKCEDIYYPR KYQGNIDGAYFGTTFPHLFLMTYGHLKP KATQ+YV RVFGFKLHKP
Sbjct:  218 DLPRSSTVKIYCPKCEDIYYPRSKYQGNIDGAYFGTTFPHLFLMTYGHLKPAKATQNYVQRVFGFKLHKP 287          
BLAST of CX307760 vs. ExPASy Swiss-Prot
Match: CSK2C_ARATH (Casein kinase II subunit beta' OS=Arabidopsis thaliana GN=CKB2 PE=1 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 5.633e-35
Identity = 64/70 (91.43%), Postives = 67/70 (95.71%), Query Frame = 2
Query:    2 DIPRSSTVKIYCPKCEDIYYPRPKYQGNIDGAYFGTTFPHLFLMTYGHLKPQKATQSYVPRVFGFKLHKP 211
            DIPR+STVKIYCPKCED+YYPR KYQGNIDGAYFGTTFPHLFLMTYGHLKPQKA+QSY  RVFGFKLHKP
Sbjct:  213 DIPRASTVKIYCPKCEDVYYPRSKYQGNIDGAYFGTTFPHLFLMTYGHLKPQKASQSYTQRVFGFKLHKP 282          
BLAST of CX307760 vs. ExPASy Swiss-Prot
Match: CSK2D_ARATH (Casein kinase II subunit beta-3 OS=Arabidopsis thaliana GN=CKB3 PE=1 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 1.388e-33
Identity = 62/70 (88.57%), Postives = 67/70 (95.71%), Query Frame = 2
Query:    2 DIPRSSTVKIYCPKCEDIYYPRPKYQGNIDGAYFGTTFPHLFLMTYGHLKPQKATQSYVPRVFGFKLHKP 211
            DIPRSSTVKIYCPKCEDI YPR K+QGNIDGAYFGTTFPHLFLMTYG+LKPQK TQSYVP++FGFK+HKP
Sbjct:  207 DIPRSSTVKIYCPKCEDISYPRSKFQGNIDGAYFGTTFPHLFLMTYGNLKPQKPTQSYVPKIFGFKVHKP 276          
BLAST of CX307760 vs. ExPASy Swiss-Prot
Match: CSK2E_ARATH (Putative casein kinase II subunit beta-4 OS=Arabidopsis thaliana GN=At2g44680 PE=2 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 5.830e-32
Identity = 58/68 (85.29%), Postives = 64/68 (94.12%), Query Frame = 2
Query:    2 DIPRSSTVKIYCPKCEDIYYPRPKYQGNIDGAYFGTTFPHLFLMTYGHLKPQKATQSYVPRVFGFKLH 205
            DIPRSSTVKIYCPKCEDIYYPR KYQGNIDGAYFGTTFPHLFLM YG++KPQK  Q+YVP++FGFK+H
Sbjct:  213 DIPRSSTVKIYCPKCEDIYYPRSKYQGNIDGAYFGTTFPHLFLMAYGNMKPQKPAQNYVPKIFGFKVH 280          
BLAST of CX307760 vs. ExPASy Swiss-Prot
Match: CK2B_DICDI (Casein kinase II subunit beta OS=Dictyostelium discoideum GN=csnk2b PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 2.540e-19
Identity = 38/69 (55.07%), Postives = 51/69 (73.91%), Query Frame = 2
Query:    2 DIPRSSTVKIYCPKCEDIYYPRPKYQGNIDGAYFGTTFPHLFLMTYGHLKPQKATQSYVPRVFGFKLHK 208
            D+    TVK+YCP+C DI+ P+ +   +IDGAYFGTTFPHL L+TY  L P K  Q Y+P+++GFK+HK
Sbjct:  138 DMQGVDTVKVYCPRCNDIFNPKYRRHSHIDGAYFGTTFPHLLLITYPELIPTKPPQQYIPKIYGFKIHK 206          
BLAST of CX307760 vs. ExPASy Swiss-Prot
Match: CSK2C_YEAST (Casein kinase II subunit beta' OS=Saccharomyces cerevisiae GN=CKB2 PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 8.172e-18
Identity = 36/69 (52.17%), Postives = 49/69 (71.01%), Query Frame = 2
Query:    2 DIPRSSTVKIYCPKCEDIYYPRPKYQGNIDGAYFGTTFPHLFLMTYGHLKPQKATQSYVPRVFGFKLHK 208
            DIP    VK+YCP CED+Y P+     +IDGAYFGT+FP +FL  +  + P+  T+ YVP++FGF+LHK
Sbjct:  156 DIPGIDCVKLYCPSCEDLYIPKSSRHSSIDGAYFGTSFPGMFLQAFPDMVPKHPTKRYVPKIFGFELHK 224          
BLAST of CX307760 vs. ExPASy Swiss-Prot
Match: CSK2B_SCHPO (Casein kinase II subunit beta OS=Schizosaccharomyces pombe GN=ckb1 PE=2 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 8.172e-18
Identity = 34/68 (50.00%), Postives = 49/68 (72.06%), Query Frame = 2
Query:    2 DIPRSSTVKIYCPKCEDIYYPRPKYQGNIDGAYFGTTFPHLFLMTYGHLKPQKATQSYVPRVFGFKLH 205
            DI  + +VK+YCP+CED+Y P+ +   +IDGAYFGT+FPH+    Y  L   K+ + Y+PR+FGFK+H
Sbjct:  130 DIAHTKSVKLYCPRCEDVYTPKSQRHASIDGAYFGTSFPHMLFQVYPELAVPKSQERYIPRIFGFKVH 197          
BLAST of CX307760 vs. ExPASy Swiss-Prot
Match: CSK2C_DROME (Casein kinase II subunit beta' OS=Drosophila melanogaster GN=CkIIbeta2 PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.106e-17
Identity = 34/68 (50.00%), Postives = 47/68 (69.12%), Query Frame = 2
Query:    2 DIPRSSTVKIYCPKCEDIYYPRPKYQGNIDGAYFGTTFPHLFLMTYGHLKPQKATQSYVPRVFGFKLH 205
            D P    V+IYCPKC D+Y P+     N+DGA+FGT FPH+F M     +P++A Q +VPR++GFK+H
Sbjct:  124 DNPGEDMVRIYCPKCNDVYIPKASRHSNLDGAFFGTGFPHMFFMEKPDARPKRAKQKFVPRLYGFKIH 191          
BLAST of CX307760 vs. ExPASy Swiss-Prot
Match: CSK2C_NEUCR (Casein kinase II subunit beta-2 OS=Neurospora crassa GN=ckb-2 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.629e-16
Identity = 34/68 (50.00%), Postives = 46/68 (67.65%), Query Frame = 2
Query:    2 DIPRSSTVKIYCPKCEDIYYPRPKYQGNIDGAYFGTTFPHLFLMTYGHLKPQKATQSYVPRVFGFKLH 205
            D+P S  VK+YC +CEDIY P+      IDGAYFGT+F ++F   Y  L P K+ + Y+PR +GFK+H
Sbjct:  130 DVPNSKPVKLYCARCEDIYNPKSSRHAAIDGAYFGTSFHNIFFQVYPTLVPAKSVERYIPRCYGFKVH 197          
BLAST of CX307760 vs. ExPASy Swiss-Prot
Match: CSK2B_DROME (Casein kinase II subunit beta OS=Drosophila melanogaster GN=CkIIbeta PE=1 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 2.629e-16
Identity = 33/68 (48.53%), Postives = 46/68 (67.65%), Query Frame = 2
Query:    2 DIPRSSTVKIYCPKCEDIYYPRPKYQGNIDGAYFGTTFPHLFLMTYGHLKPQKATQSYVPRVFGFKLH 205
            DIP  + VK YCPKC D+Y P+     + DGAYFGT FPH+  M +   +P++ T  +VPR++GFK+H
Sbjct:  126 DIPGEAMVKTYCPKCIDVYTPKSSRHHHTDGAYFGTGFPHMLFMVHPEYRPKRPTNQFVPRLYGFKIH 193          
The following BLAST results are available for this feature:
BLAST of CX307760 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
CSK2B_ARATH4.313e-3592.86Casein kinase II subunit beta OS=Arabidopsis thali... [more]
CSK2C_ARATH5.633e-3591.43Casein kinase II subunit beta' OS=Arabidopsis thal... [more]
CSK2D_ARATH1.388e-3388.57Casein kinase II subunit beta-3 OS=Arabidopsis tha... [more]
CSK2E_ARATH5.830e-3285.29Putative casein kinase II subunit beta-4 OS=Arabid... [more]
CK2B_DICDI2.540e-1955.07Casein kinase II subunit beta OS=Dictyostelium dis... [more]
CSK2C_YEAST8.172e-1852.17Casein kinase II subunit beta' OS=Saccharomyces ce... [more]
CSK2B_SCHPO8.172e-1850.00Casein kinase II subunit beta OS=Schizosaccharomyc... [more]
CSK2C_DROME3.106e-1750.00Casein kinase II subunit beta' OS=Drosophila melan... [more]
CSK2C_NEUCR2.629e-1650.00Casein kinase II subunit beta-2 OS=Neurospora cras... [more]
CSK2B_DROME2.629e-1648.53Casein kinase II subunit beta OS=Drosophila melano... [more]

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Properties
Property NameValue
Genbank descriptionC20001E07SK OF2 Citrus clementina cDNA clone C20001E07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX307760 ID=CX307760; Name=CX307760; organism=Citrus clementina; type=EST; length=372bp
AGACATCCCTCGTTCAAGTACTGTTAAAATATACTGCCCGAAATGTGAAG
ATATATATTATCCTCGGCCCAAGTACCAAGGCAATATCGATGGTGCTTAT
TTTGGGACTACCTTTCCTCACCTATTTCTAATGACATATGGACACTTAAA
GCCACAAAAGGCTACACAGAGCTATGTCCCAAGGGTTTTTGGTTTCAAGC
TTCACAAGCCCTAACATTGGAGTTGCAAGTTGCGTTAGTGTTGAAAATTC
CGGCGGCAGTGCATACCACATTTTCTCTTTTGCCTGCCTCTGTACTGAAA
GTATGCATGGCCCCAACAAGTGAGGTAAAGCGGGGTACTTCTGAATATAT
TACAATCGATTCGCATATGGAT
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