CX307761

Overview
NameCX307761
Unique NameCX307761
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length381
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX307761 vs. ExPASy Swiss-Prot
Match: RS4_GOSHI (40S ribosomal protein S4 OS=Gossypium hirsutum GN=RPS4 PE=2 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 1.726e-47
Identity = 90/93 (96.77%), Postives = 92/93 (98.92%), Query Frame = 2
Query:  101 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIP 379
            MARGLKKHLKRLNAP+HWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHV+VD KVRTDKTYPAGFMDVVSIP
Sbjct:    1 MARGLKKHLKRLNAPRHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVMVDGKVRTDKTYPAGFMDVVSIP 93          
BLAST of CX307761 vs. ExPASy Swiss-Prot
Match: RS4_ORYSJ (40S ribosomal protein S4 OS=Oryza sativa subsp. japonica GN=RPS4 PE=2 SV=3)

HSP 1 Score: 187.193 bits (474), Expect = 2.254e-47
Identity = 89/93 (95.70%), Postives = 92/93 (98.92%), Query Frame = 2
Query:  101 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIP 379
            MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILI+RNRLKYALTYREVI+ILMQRHVLVD KVRTDKTYPAGFMDV+SIP
Sbjct:    1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILIIRNRLKYALTYREVISILMQRHVLVDGKVRTDKTYPAGFMDVISIP 93          
BLAST of CX307761 vs. ExPASy Swiss-Prot
Match: RS4_MAIZE (40S ribosomal protein S4 OS=Zea mays GN=RPS4 PE=2 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 2.254e-47
Identity = 89/93 (95.70%), Postives = 92/93 (98.92%), Query Frame = 2
Query:  101 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIP 379
            MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILI+RNRLKYALTYREVI+ILMQRHVLVD KVRTDKTYPAGFMDV+SIP
Sbjct:    1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILIIRNRLKYALTYREVISILMQRHVLVDGKVRTDKTYPAGFMDVISIP 93          
BLAST of CX307761 vs. ExPASy Swiss-Prot
Match: RS43_ARATH (40S ribosomal protein S4-3 OS=Arabidopsis thaliana GN=RPS4D PE=2 SV=2)

HSP 1 Score: 184.496 bits (467), Expect = 1.461e-46
Identity = 87/93 (93.55%), Postives = 91/93 (97.85%), Query Frame = 2
Query:  101 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIP 379
            MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPL+LI+RNRLKYALTYREVI+ILMQRH+ VD KVRTDKTYPAGFMDVVSIP
Sbjct:    1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYREVISILMQRHIQVDGKVRTDKTYPAGFMDVVSIP 93          
BLAST of CX307761 vs. ExPASy Swiss-Prot
Match: RS42_ARATH (40S ribosomal protein S4-2 OS=Arabidopsis thaliana GN=RPS4B PE=2 SV=4)

HSP 1 Score: 184.496 bits (467), Expect = 1.461e-46
Identity = 87/93 (93.55%), Postives = 91/93 (97.85%), Query Frame = 2
Query:  101 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIP 379
            MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPL+LI+RNRLKYALTYREVI+ILMQRH+ VD KVRTDKTYPAGFMDVVSIP
Sbjct:    1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYREVISILMQRHIQVDGKVRTDKTYPAGFMDVVSIP 93          
BLAST of CX307761 vs. ExPASy Swiss-Prot
Match: RS41_ARATH (40S ribosomal protein S4-1 OS=Arabidopsis thaliana GN=RPS4A PE=2 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 1.461e-46
Identity = 87/93 (93.55%), Postives = 91/93 (97.85%), Query Frame = 2
Query:  101 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIP 379
            MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPL+LI+RNRLKYALTYREVI+ILMQRH+ VD KVRTDKTYPAGFMDVVSIP
Sbjct:    1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYREVISILMQRHIQVDGKVRTDKTYPAGFMDVVSIP 93          
BLAST of CX307761 vs. ExPASy Swiss-Prot
Match: RS4_SOLTU (40S ribosomal protein S4 OS=Solanum tuberosum GN=RPS4 PE=2 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 5.553e-46
Identity = 86/93 (92.47%), Postives = 91/93 (97.85%), Query Frame = 2
Query:  101 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIP 379
            MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPL++I+RNRLKYALTYREVI+ILMQR V+VD KVRTDKTYPAGFMDVVSIP
Sbjct:    1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVIIMRNRLKYALTYREVISILMQRQVMVDGKVRTDKTYPAGFMDVVSIP 93          
BLAST of CX307761 vs. ExPASy Swiss-Prot
Match: RS4_PRUAR (40S ribosomal protein S4 OS=Prunus armeniaca GN=RPS4 PE=2 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 4.262e-38
Identity = 77/93 (82.80%), Postives = 82/93 (88.17%), Query Frame = 2
Query:  101 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIP 379
            MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREV++ILMQRH+LVD K+     +     DVVSIP
Sbjct:    1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVVSILMQRHILVDGKIH----FCIRLSDVVSIP 89          
BLAST of CX307761 vs. ExPASy Swiss-Prot
Match: RS4_DICDI (40S ribosomal protein S4 OS=Dictyostelium discoideum GN=rps4 PE=1 SV=3)

HSP 1 Score: 149.443 bits (376), Expect = 5.209e-36
Identity = 73/92 (79.35%), Postives = 78/92 (84.78%), Query Frame = 2
Query:  101 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSI 376
            MARG KKHLKRL AP HWMLDKL G +AP+PSSGPHK RECLPLIL+LRNRLKYALT +EV  ILMQR V VD KVRTD  YPAGFMDV+SI
Sbjct:    1 MARGPKKHLKRLAAPNHWMLDKLSGKWAPRPSSGPHKLRECLPLILVLRNRLKYALTKKEVTLILMQRLVKVDGKVRTDPNYPAGFMDVISI 92          
BLAST of CX307761 vs. ExPASy Swiss-Prot
Match: RS4_SPOFR (40S ribosomal protein S4 OS=Spodoptera frugiperda GN=RpS4 PE=2 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 6.804e-36
Identity = 71/92 (77.17%), Postives = 79/92 (85.87%), Query Frame = 2
Query:  101 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSI 376
            MARG KKHLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPL++ LRNRLKYALT  EV+ I+ QR + VD KVRTD TYPAGFMDVVSI
Sbjct:    1 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSI 92          
The following BLAST results are available for this feature:
BLAST of CX307761 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 88
Match NameE-valueIdentityDescription
RS4_GOSHI1.726e-4796.7740S ribosomal protein S4 OS=Gossypium hirsutum GN=... [more]
RS4_ORYSJ2.254e-4795.7040S ribosomal protein S4 OS=Oryza sativa subsp. ja... [more]
RS4_MAIZE2.254e-4795.7040S ribosomal protein S4 OS=Zea mays GN=RPS4 PE=2 ... [more]
RS43_ARATH1.461e-4693.5540S ribosomal protein S4-3 OS=Arabidopsis thaliana... [more]
RS42_ARATH1.461e-4693.5540S ribosomal protein S4-2 OS=Arabidopsis thaliana... [more]
RS41_ARATH1.461e-4693.5540S ribosomal protein S4-1 OS=Arabidopsis thaliana... [more]
RS4_SOLTU5.553e-4692.4740S ribosomal protein S4 OS=Solanum tuberosum GN=R... [more]
RS4_PRUAR4.262e-3882.8040S ribosomal protein S4 OS=Prunus armeniaca GN=RP... [more]
RS4_DICDI5.209e-3679.3540S ribosomal protein S4 OS=Dictyostelium discoide... [more]
RS4_SPOFR6.804e-3677.1740S ribosomal protein S4 OS=Spodoptera frugiperda ... [more]

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Properties
Property NameValue
Genbank descriptionC20001E09SK OF2 Citrus clementina cDNA clone C20001E09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX307761 ID=CX307761; Name=CX307761; organism=Citrus clementina; type=EST; length=381bp
GAGCTAGCAGCGCTTGTGAGTGCATTTTTCACTTCGTTTTTGTTTTGCAG
GACTGTGACACGCCGTTGGCGAATCCAAGCTCAGGCTCACGAACACAAAA
ATGGCGAGAGGTTTGAAGAAACATTTGAAGAGGCTTAATGCCCCAAAGCA
CTGGATGCTTGACAAACTTGGTGGAGCATTTGCTCCCAAGCCTTCATCTG
GGCCACACAAATCAAGGGAGTGTTTGCCCTTAATTCTTATCTTACGCAAC
CGCTTGAAGTATGCTCTTACATACCGAGAAGTCATTGCAATTTTGATGCA
ACGACATGTGTTGGTTGATGCTAAGGTTCGCACAGATAAGACTTACCCTG
CTGGGTTCATGGATGTTGTGTCAATTCCAAA
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