CX307761
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX307761 vs. ExPASy Swiss-Prot
Match: RS4_GOSHI (40S ribosomal protein S4 OS=Gossypium hirsutum GN=RPS4 PE=2 SV=1) HSP 1 Score: 187.578 bits (475), Expect = 1.726e-47 Identity = 90/93 (96.77%), Postives = 92/93 (98.92%), Query Frame = 2 Query: 101 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIP 379 MARGLKKHLKRLNAP+HWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHV+VD KVRTDKTYPAGFMDVVSIP Sbjct: 1 MARGLKKHLKRLNAPRHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVMVDGKVRTDKTYPAGFMDVVSIP 93
BLAST of CX307761 vs. ExPASy Swiss-Prot
Match: RS4_ORYSJ (40S ribosomal protein S4 OS=Oryza sativa subsp. japonica GN=RPS4 PE=2 SV=3) HSP 1 Score: 187.193 bits (474), Expect = 2.254e-47 Identity = 89/93 (95.70%), Postives = 92/93 (98.92%), Query Frame = 2 Query: 101 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIP 379 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILI+RNRLKYALTYREVI+ILMQRHVLVD KVRTDKTYPAGFMDV+SIP Sbjct: 1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILIIRNRLKYALTYREVISILMQRHVLVDGKVRTDKTYPAGFMDVISIP 93
BLAST of CX307761 vs. ExPASy Swiss-Prot
Match: RS4_MAIZE (40S ribosomal protein S4 OS=Zea mays GN=RPS4 PE=2 SV=1) HSP 1 Score: 187.193 bits (474), Expect = 2.254e-47 Identity = 89/93 (95.70%), Postives = 92/93 (98.92%), Query Frame = 2 Query: 101 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIP 379 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILI+RNRLKYALTYREVI+ILMQRHVLVD KVRTDKTYPAGFMDV+SIP Sbjct: 1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILIIRNRLKYALTYREVISILMQRHVLVDGKVRTDKTYPAGFMDVISIP 93
BLAST of CX307761 vs. ExPASy Swiss-Prot
Match: RS43_ARATH (40S ribosomal protein S4-3 OS=Arabidopsis thaliana GN=RPS4D PE=2 SV=2) HSP 1 Score: 184.496 bits (467), Expect = 1.461e-46 Identity = 87/93 (93.55%), Postives = 91/93 (97.85%), Query Frame = 2 Query: 101 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIP 379 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPL+LI+RNRLKYALTYREVI+ILMQRH+ VD KVRTDKTYPAGFMDVVSIP Sbjct: 1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYREVISILMQRHIQVDGKVRTDKTYPAGFMDVVSIP 93
BLAST of CX307761 vs. ExPASy Swiss-Prot
Match: RS42_ARATH (40S ribosomal protein S4-2 OS=Arabidopsis thaliana GN=RPS4B PE=2 SV=4) HSP 1 Score: 184.496 bits (467), Expect = 1.461e-46 Identity = 87/93 (93.55%), Postives = 91/93 (97.85%), Query Frame = 2 Query: 101 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIP 379 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPL+LI+RNRLKYALTYREVI+ILMQRH+ VD KVRTDKTYPAGFMDVVSIP Sbjct: 1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYREVISILMQRHIQVDGKVRTDKTYPAGFMDVVSIP 93
BLAST of CX307761 vs. ExPASy Swiss-Prot
Match: RS41_ARATH (40S ribosomal protein S4-1 OS=Arabidopsis thaliana GN=RPS4A PE=2 SV=1) HSP 1 Score: 184.496 bits (467), Expect = 1.461e-46 Identity = 87/93 (93.55%), Postives = 91/93 (97.85%), Query Frame = 2 Query: 101 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIP 379 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPL+LI+RNRLKYALTYREVI+ILMQRH+ VD KVRTDKTYPAGFMDVVSIP Sbjct: 1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYREVISILMQRHIQVDGKVRTDKTYPAGFMDVVSIP 93
BLAST of CX307761 vs. ExPASy Swiss-Prot
Match: RS4_SOLTU (40S ribosomal protein S4 OS=Solanum tuberosum GN=RPS4 PE=2 SV=1) HSP 1 Score: 182.57 bits (462), Expect = 5.553e-46 Identity = 86/93 (92.47%), Postives = 91/93 (97.85%), Query Frame = 2 Query: 101 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIP 379 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPL++I+RNRLKYALTYREVI+ILMQR V+VD KVRTDKTYPAGFMDVVSIP Sbjct: 1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVIIMRNRLKYALTYREVISILMQRQVMVDGKVRTDKTYPAGFMDVVSIP 93
BLAST of CX307761 vs. ExPASy Swiss-Prot
Match: RS4_PRUAR (40S ribosomal protein S4 OS=Prunus armeniaca GN=RPS4 PE=2 SV=1) HSP 1 Score: 156.377 bits (394), Expect = 4.262e-38 Identity = 77/93 (82.80%), Postives = 82/93 (88.17%), Query Frame = 2 Query: 101 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIP 379 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREV++ILMQRH+LVD K+ + DVVSIP Sbjct: 1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVVSILMQRHILVDGKIH----FCIRLSDVVSIP 89
BLAST of CX307761 vs. ExPASy Swiss-Prot
Match: RS4_DICDI (40S ribosomal protein S4 OS=Dictyostelium discoideum GN=rps4 PE=1 SV=3) HSP 1 Score: 149.443 bits (376), Expect = 5.209e-36 Identity = 73/92 (79.35%), Postives = 78/92 (84.78%), Query Frame = 2 Query: 101 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSI 376 MARG KKHLKRL AP HWMLDKL G +AP+PSSGPHK RECLPLIL+LRNRLKYALT +EV ILMQR V VD KVRTD YPAGFMDV+SI Sbjct: 1 MARGPKKHLKRLAAPNHWMLDKLSGKWAPRPSSGPHKLRECLPLILVLRNRLKYALTKKEVTLILMQRLVKVDGKVRTDPNYPAGFMDVISI 92
BLAST of CX307761 vs. ExPASy Swiss-Prot
Match: RS4_SPOFR (40S ribosomal protein S4 OS=Spodoptera frugiperda GN=RpS4 PE=2 SV=1) HSP 1 Score: 149.058 bits (375), Expect = 6.804e-36 Identity = 71/92 (77.17%), Postives = 79/92 (85.87%), Query Frame = 2 Query: 101 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSI 376 MARG KKHLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPL++ LRNRLKYALT EV+ I+ QR + VD KVRTD TYPAGFMDVVSI Sbjct: 1 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSI 92 The following BLAST results are available for this feature:
BLAST of CX307761 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 88
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Sequences
The
following sequences are available for this feature:
EST sequence >CX307761 ID=CX307761; Name=CX307761; organism=Citrus clementina; type=EST; length=381bpback to top |