CX307764

Overview
NameCX307764
Unique NameCX307764
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length404
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX307764 vs. ExPASy Swiss-Prot
Match: DCE_PETHY (Glutamate decarboxylase OS=Petunia hybrida GN=GAD PE=1 SV=1)

HSP 1 Score: 259.225 bits (661), Expect = 4.676e-69
Identity = 120/134 (89.55%), Postives = 131/134 (97.76%), Query Frame = 2
Query:    2 FLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVVWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLKEGLEKTGRFNIVSKDEGVPLVAFSLKDNKRHD 403
            F+YPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVVWRNK+DLP+ELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLG+EGY+NVMENC ENA VL+EGLEKTGRFNI+SK+ GVPLVAFSLKDN++H+
Sbjct:  254 FIYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVVWRNKDDLPDELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGYEGYKNVMENCQENASVLREGLEKTGRFNIISKEIGVPLVAFSLKDNRQHN 387          
BLAST of CX307764 vs. ExPASy Swiss-Prot
Match: DCE1_ARATH (Glutamate decarboxylase 1 OS=Arabidopsis thaliana GN=GAD1 PE=1 SV=2)

HSP 1 Score: 257.684 bits (657), Expect = 1.361e-68
Identity = 123/133 (92.48%), Postives = 127/133 (95.49%), Query Frame = 2
Query:    2 FLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVVWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLKEGLEKTGRFNIVSKDEGVPLVAFSLKDNKRH 400
            FLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWV+WRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLG EGYRNVMENC EN +VL+EGLEKT RFNIVSKDEGVPLVAFSLKD+  H
Sbjct:  254 FLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGHEGYRNVMENCRENMIVLREGLEKTERFNIVSKDEGVPLVAFSLKDSSCH 386          
BLAST of CX307764 vs. ExPASy Swiss-Prot
Match: DCE2_ARATH (Glutamate decarboxylase 2 OS=Arabidopsis thaliana GN=GAD2 PE=1 SV=1)

HSP 1 Score: 250.366 bits (638), Expect = 2.172e-66
Identity = 118/134 (88.06%), Postives = 127/134 (94.78%), Query Frame = 2
Query:    2 FLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVVWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLKEGLEKTGRFNIVSKDEGVPLVAFSLKDNKRHD 403
            F+YPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVVWR  EDLPEELIFHINYLGADQPTFTLNFSKGSSQ+IAQYYQLIRLGFEGY+NVMENC EN +VLKEG+EKT RFNIVSKD+GVP+VAFSLKD+  H+
Sbjct:  253 FIYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVVWRAAEDLPEELIFHINYLGADQPTFTLNFSKGSSQIIAQYYQLIRLGFEGYKNVMENCIENMVVLKEGIEKTERFNIVSKDQGVPVVAFSLKDHSFHN 386          
BLAST of CX307764 vs. ExPASy Swiss-Prot
Match: DCE_SOLLC (Glutamate decarboxylase OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 234.187 bits (596), Expect = 1.611e-61
Identity = 106/133 (79.70%), Postives = 124/133 (93.23%), Query Frame = 2
Query:    2 FLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVVWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLKEGLEKTGRFNIVSKDEGVPLVAFSLKDNKRH 400
            FL+P+LEWDFRLPLVKSINVSGHKYGLVYAG+GWV+WR+KEDLP+EL+FHINYLG+DQPTFTLNFSKGS Q+IAQYYQLIRLGFEGY+NVM+NC  NA VL EG+ K GRF+IVSKD GVP+VAFSL+D+ ++
Sbjct:  255 FLWPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVIWRSKEDLPDELVFHINYLGSDQPTFTLNFSKGSYQIIAQYYQLIRLGFEGYKNVMKNCLSNAKVLTEGITKMGRFDIVSKDVGVPVVAFSLRDSSKY 387          
BLAST of CX307764 vs. ExPASy Swiss-Prot
Match: DCE_LACLM (Glutamate decarboxylase OS=Lactococcus lactis subsp. cremoris (strain MG1363) GN=gadB PE=1 SV=2)

HSP 1 Score: 162.54 bits (410), Expect = 5.957e-40
Identity = 73/130 (56.15%), Postives = 96/130 (73.85%), Query Frame = 2
Query:    2 FLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVVWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLKEGLEKTGRFNIVSKDEGVPLVAFSLKDN 391
            F+ PELEWDFRL  V SIN SGHKYGLVY G+GWV+WR+K+ LPEELIF ++YLG + PT  +NFS  +SQ+I QYY  +R GF+GY+ + E  H+ AM L E +EKTG F I++    +P+V + LK+N
Sbjct:  254 FVEPELEWDFRLKNVISINTSGHKYGLVYPGVGWVLWRDKKYLPEELIFKVSYLGGELPTMAINFSHSASQLIGQYYNFVRYGFDGYKAIHERTHKVAMYLAEEIEKTGMFEIMNDGAQLPIVCYKLKEN 383          
BLAST of CX307764 vs. ExPASy Swiss-Prot
Match: DCE_LACLA (Glutamate decarboxylase OS=Lactococcus lactis subsp. lactis GN=gadB PE=1 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 5.043e-39
Identity = 71/130 (54.62%), Postives = 96/130 (73.85%), Query Frame = 2
Query:    2 FLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVVWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLKEGLEKTGRFNIVSKDEGVPLVAFSLKDN 391
            F+ PELEWDFRL  V SIN SGHKYGLVY G+GWV+WR+K+ LPEELIF ++YLG + PT  +NFS  +SQ+I QYY  +R GF+GY+ + E  H+ AM L + +EKTG F I++    +P+V + LK++
Sbjct:  254 FVEPELEWDFRLKNVISINTSGHKYGLVYPGVGWVLWRDKKYLPEELIFKVSYLGGELPTMAINFSHSASQLIGQYYNFVRYGFDGYKAIHERTHKVAMFLAKEIEKTGMFEIMNDGSQLPIVCYKLKED 383          
BLAST of CX307764 vs. ExPASy Swiss-Prot
Match: DCEC_LISIN (Probable glutamate decarboxylase gamma OS=Listeria innocua GN=lin2528 PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 8.601e-39
Identity = 68/130 (52.31%), Postives = 94/130 (72.31%), Query Frame = 2
Query:    2 FLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVVWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLKEGLEKTGRFNIVSKDEGVPLVAFSLKDN 391
            F+ PEL WDFRL  V SIN SGHKYGLVY G+GW++W++KE LP+ELIF ++YLG   PT  +NFS+ +SQ+I QYY  +R GFEGYR + E   + A+ L + +EK+G F I++    +P+V + LKD+
Sbjct:  255 FVNPELPWDFRLKNVVSINTSGHKYGLVYPGVGWILWKDKEYLPKELIFEVSYLGGSMPTMAINFSRSASQIIGQYYNFLRYGFEGYREIHEKTKKTALYLSKTVEKSGYFEIINDGSNLPIVCYKLKDD 384          
BLAST of CX307764 vs. ExPASy Swiss-Prot
Match: DCEA_LISMO (Glutamate decarboxylase alpha OS=Listeria monocytogenes GN=gadA PE=3 SV=2)

HSP 1 Score: 156.762 bits (395), Expect = 3.269e-38
Identity = 67/130 (51.54%), Postives = 92/130 (70.77%), Query Frame = 2
Query:    2 FLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVVWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLKEGLEKTGRFNIVSKDEGVPLVAFSLKDN 391
            F+ P LEWDFRLP V SIN SGHKYGLVY G+GW++WR+KE LPEEL+F ++YLG   PT  +NFS+ +SQ+I QYY  +R G+EGYR +     + A+ L + + +TG F I +    +P+V + LKD+
Sbjct:  250 FVEPGLEWDFRLPNVVSINTSGHKYGLVYPGVGWILWRDKEYLPEELVFDVSYLGGHMPTMAINFSRSASQIIGQYYNFLRFGYEGYRQIHMRTRDGALQLSQAVAETGLFEIYNDGANLPIVCYKLKDD 379          
BLAST of CX307764 vs. ExPASy Swiss-Prot
Match: DCEC_LISMO (Probable glutamate decarboxylase gamma OS=Listeria monocytogenes GN=lmo2434 PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 1.242e-37
Identity = 66/129 (51.16%), Postives = 93/129 (72.09%), Query Frame = 2
Query:    2 FLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVVWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLKEGLEKTGRFNIVSKDEGVPLVAFSLKD 388
            F+ PEL WDFRL  V SIN SGHKYGLVY G+GW++W++KE LP+ELIF ++YLG   PT  +NFS+ +SQ+I QYY  +R GFEGYR + E   + A+ L + +EK+G F I++    +P+V + +K+
Sbjct:  255 FVNPELPWDFRLKNVVSINTSGHKYGLVYPGVGWILWKDKEYLPKELIFEVSYLGGSMPTMAINFSRSASQIIGQYYNFLRYGFEGYREIHEKTKKTAIYLAKTVEKSGYFEIINDGANLPIVCYKMKE 383          
BLAST of CX307764 vs. ExPASy Swiss-Prot
Match: DCEB_LISMO (Glutamate decarboxylase beta OS=Listeria monocytogenes GN=gadB PE=3 SV=2)

HSP 1 Score: 147.902 bits (372), Expect = 1.518e-35
Identity = 65/130 (50.00%), Postives = 91/130 (70.00%), Query Frame = 2
Query:    2 FLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVVWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLKEGLEKTGRFNIVSKDEGVPLVAFSLKDN 391
            F+ P++ WDFRL  V SIN SGHKYGLVY GIGWV+W+++  LPEELIF ++YLG + PT  +NFS+ +S +I QYY  +R GFEGYR + +   + A  L   +E+TG F+I +    +P+V + LKD+
Sbjct:  252 FVEPDIIWDFRLKNVISINTSGHKYGLVYPGIGWVLWKDESYLPEELIFKVSYLGGEMPTMQINFSRSASHIIGQYYNFLRYGFEGYRTIHQKTSDVAQYLAHAVEQTGYFDIFNDGSHLPIVCYKLKDD 381          
The following BLAST results are available for this feature:
BLAST of CX307764 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
DCE_PETHY4.676e-6989.55Glutamate decarboxylase OS=Petunia hybrida GN=GAD ... [more]
DCE1_ARATH1.361e-6892.48Glutamate decarboxylase 1 OS=Arabidopsis thaliana ... [more]
DCE2_ARATH2.172e-6688.06Glutamate decarboxylase 2 OS=Arabidopsis thaliana ... [more]
DCE_SOLLC1.611e-6179.70Glutamate decarboxylase OS=Solanum lycopersicum PE... [more]
DCE_LACLM5.957e-4056.15Glutamate decarboxylase OS=Lactococcus lactis subs... [more]
DCE_LACLA5.043e-3954.62Glutamate decarboxylase OS=Lactococcus lactis subs... [more]
DCEC_LISIN8.601e-3952.31Probable glutamate decarboxylase gamma OS=Listeria... [more]
DCEA_LISMO3.269e-3851.54Glutamate decarboxylase alpha OS=Listeria monocyto... [more]
DCEC_LISMO1.242e-3751.16Probable glutamate decarboxylase gamma OS=Listeria... [more]
DCEB_LISMO1.518e-3550.00Glutamate decarboxylase beta OS=Listeria monocytog... [more]

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Properties
Property NameValue
Genbank descriptionC20001F01SK OF2 Citrus clementina cDNA clone C20001F01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX307764 ID=CX307764; Name=CX307764; organism=Citrus clementina; type=EST; length=404bp
ATTTTTGTACCCAGAGCTTGAATGGGACTTCCGCTTGCCGCTGGTGAAGA
GTATTAATGTTAGTGGCCACAAGTACGGGCTTGTGTATGCTGGTATTGGT
TGGGTTGTTTGGAGAAACAAAGAAGACTTGCCTGAAGAACTCATCTTCCA
CATCAATTACCTAGGAGCTGATCAACCCACCTTCACCCTCAATTTTTCTA
AAGGTTCTAGCCAAGTAATTGCTCAGTACTACCAACTAATCCGCTTAGGT
TTTGAGGGATACCGCAATGTGATGGAGAATTGTCACGAAAATGCAATGGT
GCTGAAAGAAGGACTAGAGAAAACCGGCCGCTTCAACATTGTGTCAAAGG
ACGAAGGGGTTCCGTTGGTGGCATTTTCTCTCAAGGACAACAAACGCCAC
GATG
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