CX307765

Overview
NameCX307765
Unique NameCX307765
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length390
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX307765 vs. ExPASy Swiss-Prot
Match: WDR26_HUMAN (WD repeat-containing protein 26 OS=Homo sapiens GN=WDR26 PE=1 SV=3)

HSP 1 Score: 108.997 bits (271), Expect = 7.713e-24
Identity = 53/129 (41.09%), Postives = 85/129 (65.89%), Query Frame = 2
Query:    5 DGENLISVLSDKDIRILNLGTYAER-VISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNP 388
            DG+ +++  + + IR  N     +R ++ E+HPI S ++S + +  ++N+ +Q +H+WD+  +     KY G +Q  Y I SCFGG +  FIASGSE+ ++YIW++R+  PI  L+GH+ TVNCVSWNP
Sbjct:  496 DGKTVLASDTHQRIRGYNFEDLTDRNIVQEDHPIMSFTISKNGRLALLNVATQGVHLWDLQDR-VLVRKYQGVTQGFYTIHSCFGGHNEDFIASGSEDHKVYIWHKRSELPIAELTGHTRTVNCVSWNP 623          
BLAST of CX307765 vs. ExPASy Swiss-Prot
Match: WDR26_MOUSE (WD repeat-containing protein 26 OS=Mus musculus GN=Wdr26 PE=1 SV=2)

HSP 1 Score: 108.612 bits (270), Expect = 1.007e-23
Identity = 52/129 (40.31%), Postives = 85/129 (65.89%), Query Frame = 2
Query:    5 DGENLISVLSDKDIRILNLGTYAER-VISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNP 388
            DG+ +++  + + +R  N     +R ++ E+HPI S ++S + +  ++N+ +Q +H+WD+  +     KY G +Q  Y I SCFGG +  FIASGSE+ ++YIW++R+  PI  L+GH+ TVNCVSWNP
Sbjct:  476 DGKTVLASDTHQRVRGYNFEDLTDRNIVQEDHPIMSFTISKNGRLALLNVATQGVHLWDLQDR-VLVRKYQGVTQGFYTIHSCFGGHNEDFIASGSEDHKVYIWHKRSELPIAELTGHTRTVNCVSWNP 603          
BLAST of CX307765 vs. ExPASy Swiss-Prot
Match: WDR26_XENTR (WD repeat-containing protein 26 OS=Xenopus tropicalis GN=wdr26 PE=2 SV=2)

HSP 1 Score: 108.227 bits (269), Expect = 1.316e-23
Identity = 52/129 (40.31%), Postives = 85/129 (65.89%), Query Frame = 2
Query:    5 DGENLISVLSDKDIRILNLGTYAER-VISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNP 388
            DG+ +++  + + IR  N     +R ++ E+HPI S ++S + +  ++N+ +Q +H+WD+  +     KY G +Q  Y I SCFGG +  FIASGSE+ ++Y+W++R+  PI  L+GH+ TVNCVSWNP
Sbjct:  449 DGKTVLASDTHQRIRGYNFEDLTDRNIVQEDHPIMSFTISRNGRLALLNVATQGVHLWDLQDR-VLVRKYQGVTQGFYTIHSCFGGHNEDFIASGSEDHKVYVWHKRSELPIAELTGHTRTVNCVSWNP 576          
BLAST of CX307765 vs. ExPASy Swiss-Prot
Match: WDR26_DANRE (WD repeat-containing protein 26 OS=Danio rerio GN=wdr26 PE=1 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 3.828e-23
Identity = 53/129 (41.09%), Postives = 84/129 (65.12%), Query Frame = 2
Query:    5 DGENLISVLSDKDIRILNLGTYAER-VISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNP 388
            DG  +++  + + IR  +     +R ++ E+HPI S +VS + +  ++N+ +Q +H+WD+  +     KY G +Q  Y I SCFGG +  FIASGSE+ ++YIW++R+  PI  L+GH+ TVNCVSWNP
Sbjct:  408 DGRTVLASDTHQRIRGYSFEDLTDRNIVQEDHPIMSFTVSKNGRLALLNVATQGVHLWDLQDR-VLVRKYQGVTQGFYTIHSCFGGHNEDFIASGSEDHKVYIWHKRSELPIVELTGHTRTVNCVSWNP 535          
BLAST of CX307765 vs. ExPASy Swiss-Prot
Match: WDR26_DROME (WD repeat-containing protein 26 homolog OS=Drosophila melanogaster GN=CG7611 PE=1 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.778e-20
Identity = 41/103 (39.81%), Postives = 71/103 (68.93%), Query Frame = 2
Query:   80 VISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNP 388
            ++ E HPI + S++   +  ++N+++Q +H+WD+  K     ++ G  Q+ + I SCFGG++ +F+ASGSE+  +YIW+ +  +P+  L+GH+ TVNCVSWNP
Sbjct:  483 ILREPHPIMTFSINSADRLALLNVSNQGLHLWDIEDKCLVR-RFQGIRQSNFAIHSCFGGVNESFVASGSEDKVVYIWHIKREEPLAKLAGHTKTVNCVSWNP 584          
BLAST of CX307765 vs. ExPASy Swiss-Prot
Match: YIPC_SCHPO (Uncharacterized WD repeat-containing protein C343.04c OS=Schizosaccharomyces pombe GN=SPAC343.04c PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 5.919e-16
Identity = 49/127 (38.58%), Postives = 71/127 (55.91%), Query Frame = 2
Query:   11 ENLISVLSDKDIRILNLGTY-AERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNP 388
            E LI+   DK I I ++ T    + IS +  +TS+ +S D K  + NL      +WD+        +Y GH    ++I SCFGG D TF+ SGSE+ +I IW+R + K +  LSGH   VN V++NP
Sbjct:  356 EQLINA-EDKHIAIYSVETRECIKKISLQSKVTSICLSKDSKYALTNLEPHTTFLWDLEEN-RIVRQYMGHKLGNFLIGSCFGGKDDTFVLSGSEDDKIRIWHRESGKLLATLSGHVKCVNYVAYNP 480          
BLAST of CX307765 vs. ExPASy Swiss-Prot
Match: YZLL_CAEEL (Uncharacterized WD repeat-containing protein K04G11.4 OS=Caenorhabditis elegans GN=K04G11.4 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.690e-13
Identity = 44/131 (33.59%), Postives = 69/131 (52.67%), Query Frame = 2
Query:    5 DGENLISVLSDKDIRILN--LGTYAERVISEEHP-ITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNP 388
            DG  L S   D  +RI +   GT  + +I EEHP IT +  S + K  + +  +  + +WD   K     +YTGH  +KY + + F    G +I SGSE+ ++YIWN +  + ++ L GH+  V C   +P
Sbjct:  243 DGAYLASGSYDGIVRIWDSTTGTCVKTLIDEEHPPITHVKFSPNGKYILASNLNNTLKLWDYQ-KLRVLKEYTGHENSKYCVAANFSVTGGKWIVSGSEDHKVYIWNLQTREILQTLDGHNTAVMCTDCHP 372          
BLAST of CX307765 vs. ExPASy Swiss-Prot
Match: Y2124_ANASP (Uncharacterized WD repeat-containing protein all2124 OS=Anabaena sp. (strain PCC 7120) GN=all2124 PE=4 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.488e-11
Identity = 40/131 (30.53%), Postives = 66/131 (50.38%), Query Frame = 2
Query:    2 PDGENLISVLSDKDIRILNL--GTYAERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNP 388
            PDG+ + S  SDK I++     GT  + +   E  + ++  S D KN     +   I +WD     +     TGHS     +R      DG  IA+GSE+  + +W+R++ K ++ L+GH   VN +S++P
Sbjct: 1123 PDGQTIASGGSDKTIKLWQTSDGTLLKTITGHEQTVNNVYFSPDGKNLASASSDHSIKLWDTTSG-QLLMTLTGHSAGVITVRF---SPDGQTIAAGSEDKTVKLWHRQDGKLLKTLNGHQDWVNSLSFSP 1249          
The following BLAST results are available for this feature:
BLAST of CX307765 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
WDR26_HUMAN7.713e-2441.09WD repeat-containing protein 26 OS=Homo sapiens GN... [more]
WDR26_MOUSE1.007e-2340.31WD repeat-containing protein 26 OS=Mus musculus GN... [more]
WDR26_XENTR1.316e-2340.31WD repeat-containing protein 26 OS=Xenopus tropica... [more]
WDR26_DANRE3.828e-2341.09WD repeat-containing protein 26 OS=Danio rerio GN=... [more]
WDR26_DROME1.778e-2039.81WD repeat-containing protein 26 homolog OS=Drosoph... [more]
YIPC_SCHPO5.919e-1638.58Uncharacterized WD repeat-containing protein C343.... [more]
YZLL_CAEEL4.690e-1333.59Uncharacterized WD repeat-containing protein K04G1... [more]
Y2124_ANASP7.488e-1130.53Uncharacterized WD repeat-containing protein all21... [more]
back to top
Properties
Property NameValue
Genbank descriptionC20001F02SK OF2 Citrus clementina cDNA clone C20001F02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX307765 ID=CX307765; Name=CX307765; organism=Citrus clementina; type=EST; length=390bp
ACCAGATGGGGAAAATCTTATCAGCGTTTTATCAGATAAAGATATTCGGA
TACTAAATTTGGGGACATATGCTGAGAGGGTCATCTCTGAGGAGCACCCA
ATCACATCCCTGTCGGTTTCGGTAGATTGTAAGAACTTCATTGTCAACTT
AAACAGCCAAGAGATCCACATGTGGGATGTTGCTGGAAAATGGGAAAAAC
CATTTAAGTATACGGGCCACAGCCAAAACAAATATGTGATACGGTCCTGC
TTTGGTGGCTTGGATGGTACATTTATTGCCAGTGGCAGTGAGAATTCTCA
GATCTACATTTGGAATCGGCGAAACTCTAAACCAATTGAAATTTTATCTG
GCCATTCAATGACTGTAAACTGTGTGAGCTGGAATCCTAA
back to top