CX307769

Overview
NameCX307769
Unique NameCX307769
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length384
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX307769 vs. ExPASy Swiss-Prot
Match: PER1B_ARMRU (Peroxidase C1B OS=Armoracia rusticana GN=PRXC1B PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 1.238e-29
Identity = 63/100 (63.00%), Postives = 75/100 (75.00%), Query Frame = 3
Query:   81 SSSQAQLTPDFYNTTCPNASNIILGVLQNAFNSDIRITASLIRLHFHDCFVNGCDGSILLDNVANDTSIDSEKFSMANNNSARGFEVVDAMKAALESACP 380
            S S AQLTP FY+T+CPN SNI+  ++ N   SD RITAS++RLHFHDCFVNGCD SILLDN    TS  +EK ++ N NSARGF  VD +KAA+E ACP
Sbjct:   24 SLSDAQLTPTFYDTSCPNVSNIVRDIIINELRSDPRITASILRLHFHDCFVNGCDASILLDNT---TSFLTEKDALGNANSARGFPTVDRIKAAVERACP 120          
BLAST of CX307769 vs. ExPASy Swiss-Prot
Match: PER1A_ARMRU (Peroxidase C1A OS=Armoracia rusticana GN=PRXC1A PE=1 SV=2)

HSP 1 Score: 128.257 bits (321), Expect = 1.238e-29
Identity = 63/100 (63.00%), Postives = 73/100 (73.00%), Query Frame = 3
Query:   81 SSSQAQLTPDFYNTTCPNASNIILGVLQNAFNSDIRITASLIRLHFHDCFVNGCDGSILLDNVANDTSIDSEKFSMANNNSARGFEVVDAMKAALESACP 380
            S S AQLTP FY+ +CPN SNI+   + N   SD RI AS++RLHFHDCFVNGCD SILLDN    TS  +EK +  N NSARGF V+D MKAA+ESACP
Sbjct:   26 SLSDAQLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNT---TSFRTEKDAFGNANSARGFPVIDRMKAAVESACP 122          
BLAST of CX307769 vs. ExPASy Swiss-Prot
Match: PER15_IPOBA (Peroxidase 15 OS=Ipomoea batatas GN=pod PE=1 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 1.238e-29
Identity = 63/101 (62.38%), Postives = 77/101 (76.24%), Query Frame = 3
Query:   81 SSSQAQLTPDFYNTTCPNASNIILGVLQNAFNSDIRITASLIRLHFHDCFVNGCDGSILLDNVANDTSIDSEKFSMANNNSARGFEVVDAMKAALESACPG 383
            S S AQL+  FY+TTCPN S I+  V+Q A  +D RI  SLIRLHFHDCFV+GCDGS+LLDN  N T+I SEK ++ N NS RGF+VVD +K A+E+ACPG
Sbjct:   19 SHSNAQLSSTFYSTTCPNVSAIVRTVVQQALQNDARIGGSLIRLHFHDCFVDGCDGSLLLDN--NGTTIVSEKDALPNTNSTRGFDVVDNIKTAVENACPG 117          
BLAST of CX307769 vs. ExPASy Swiss-Prot
Match: PER54_ARATH (Peroxidase 54 OS=Arabidopsis thaliana GN=PER54 PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 4.705e-29
Identity = 63/100 (63.00%), Postives = 74/100 (74.00%), Query Frame = 3
Query:   84 SSQAQLTPDFYNTTCPNASNIILGVLQNAFNSDIRITASLIRLHFHDCFVNGCDGSILLDNVANDTSIDSEKFSMANNNSARGFEVVDAMKAALESACPG 383
            +S AQL   FY+ TCPNAS I+   +Q A  SD RI  SLIRLHFHDCFVNGCDGS+LLD+    +SI SEK + AN NS RGF VVD++K ALE+ACPG
Sbjct:   28 TSSAQLNATFYSGTCPNASAIVRSTIQQALQSDARIGGSLIRLHFHDCFVNGCDGSLLLDDT---SSIQSEKNAPANANSTRGFNVVDSIKTALENACPG 124          
BLAST of CX307769 vs. ExPASy Swiss-Prot
Match: PER38_ARATH (Peroxidase 38 OS=Arabidopsis thaliana GN=PER38 PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 1.788e-28
Identity = 60/100 (60.00%), Postives = 72/100 (72.00%), Query Frame = 3
Query:   81 SSSQAQLTPDFYNTTCPNASNIILGVLQNAFNSDIRITASLIRLHFHDCFVNGCDGSILLDNVANDTSIDSEKFSMANNNSARGFEVVDAMKAALESACP 380
            S S AQL+P FY+ TCP   +I+   + NA  SD RI AS++RLHFHDCFVNGCD SILLDN    TS  +EK +  N NSARGF+V+D MKAA+E ACP
Sbjct:   18 SLSHAQLSPSFYDKTCPQVFDIVTNTIVNALRSDPRIAASILRLHFHDCFVNGCDASILLDNT---TSFRTEKDAFGNANSARGFDVIDKMKAAIEKACP 114          
BLAST of CX307769 vs. ExPASy Swiss-Prot
Match: PER34_ARATH (Peroxidase 34 OS=Arabidopsis thaliana GN=PER34 PE=1 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 2.335e-28
Identity = 61/100 (61.00%), Postives = 72/100 (72.00%), Query Frame = 3
Query:   81 SSSQAQLTPDFYNTTCPNASNIILGVLQNAFNSDIRITASLIRLHFHDCFVNGCDGSILLDNVANDTSIDSEKFSMANNNSARGFEVVDAMKAALESACP 380
            S S AQLTP FY+ +CPN +NI+   + N   SD RI AS++RLHFHDCFVNGCD SILLDN    TS  +EK +  N NSARGF V+D MKAA+E ACP
Sbjct:   26 SLSAAQLTPTFYDRSCPNVTNIVRETIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNT---TSFRTEKDAFGNANSARGFPVIDRMKAAVERACP 122          
BLAST of CX307769 vs. ExPASy Swiss-Prot
Match: PER33_ARATH (Peroxidase 33 OS=Arabidopsis thaliana GN=PER33 PE=1 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 2.335e-28
Identity = 60/100 (60.00%), Postives = 72/100 (72.00%), Query Frame = 3
Query:   81 SSSQAQLTPDFYNTTCPNASNIILGVLQNAFNSDIRITASLIRLHFHDCFVNGCDGSILLDNVANDTSIDSEKFSMANNNSARGFEVVDAMKAALESACP 380
            S S AQLTP FY+T+CP  +NI+   + N   SD RI  S++RLHFHDCFVNGCD SILLDN    TS  +EK ++ N NSARGF V+D MKAA+E ACP
Sbjct:   27 SFSDAQLTPTFYDTSCPTVTNIVRDTIVNELRSDPRIAGSILRLHFHDCFVNGCDASILLDNT---TSFRTEKDALGNANSARGFPVIDRMKAAVERACP 123          
BLAST of CX307769 vs. ExPASy Swiss-Prot
Match: PER53_ARATH (Peroxidase 53 OS=Arabidopsis thaliana GN=PER53 PE=1 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 3.049e-28
Identity = 64/100 (64.00%), Postives = 72/100 (72.00%), Query Frame = 3
Query:   84 SSQAQLTPDFYNTTCPNASNIILGVLQNAFNSDIRITASLIRLHFHDCFVNGCDGSILLDNVANDTSIDSEKFSMANNNSARGFEVVDAMKAALESACPG 383
            +S AQL   FY+ TCPNAS I+   +Q A  SD RI ASLIRLHFHDCFVNGCD SILLD+     SI SEK +  N NSARGF VVD +K ALE+ACPG
Sbjct:   27 TSSAQLNATFYSGTCPNASAIVRSTIQQALQSDTRIGASLIRLHFHDCFVNGCDASILLDDTG---SIQSEKNAGPNVNSARGFNVVDNIKTALENACPG 123          
BLAST of CX307769 vs. ExPASy Swiss-Prot
Match: PER1C_ARMRU (Peroxidase C1C (Fragment) OS=Armoracia rusticana GN=PRXC1C PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 3.049e-28
Identity = 61/100 (61.00%), Postives = 72/100 (72.00%), Query Frame = 3
Query:   81 SSSQAQLTPDFYNTTCPNASNIILGVLQNAFNSDIRITASLIRLHFHDCFVNGCDGSILLDNVANDTSIDSEKFSMANNNSARGFEVVDAMKAALESACP 380
            S S AQLTP FY+ +CPN SNI+  ++ N   SD  I AS++RLHFHDCFVNGCD SILLDN    TS  +EK +  N NSARGF VVD +KAA+E ACP
Sbjct:    5 SFSNAQLTPTFYDNSCPNVSNIVRDIIINELRSDPSIAASILRLHFHDCFVNGCDASILLDNT---TSFRTEKDAFGNANSARGFPVVDRIKAAVERACP 101          
BLAST of CX307769 vs. ExPASy Swiss-Prot
Match: PER37_ARATH (Peroxidase 37 OS=Arabidopsis thaliana GN=PER37 PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 1.159e-27
Identity = 60/100 (60.00%), Postives = 71/100 (71.00%), Query Frame = 3
Query:   81 SSSQAQLTPDFYNTTCPNASNIILGVLQNAFNSDIRITASLIRLHFHDCFVNGCDGSILLDNVANDTSIDSEKFSMANNNSARGFEVVDAMKAALESACP 380
            S S AQL+P FY+ TCP   +I    + NA  SD RI AS++RLHFHDCFVNGCD SILLDN    TS  +EK +  N NSARGF+V+D MKAA+E ACP
Sbjct:   18 SLSHAQLSPSFYDKTCPQVFDIATTTIVNALRSDPRIAASILRLHFHDCFVNGCDASILLDNT---TSFRTEKDAFGNANSARGFDVIDKMKAAVEKACP 114          
The following BLAST results are available for this feature:
BLAST of CX307769 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 95
Match NameE-valueIdentityDescription
PER1B_ARMRU1.238e-2963.00Peroxidase C1B OS=Armoracia rusticana GN=PRXC1B PE... [more]
PER1A_ARMRU1.238e-2963.00Peroxidase C1A OS=Armoracia rusticana GN=PRXC1A PE... [more]
PER15_IPOBA1.238e-2962.38Peroxidase 15 OS=Ipomoea batatas GN=pod PE=1 SV=1[more]
PER54_ARATH4.705e-2963.00Peroxidase 54 OS=Arabidopsis thaliana GN=PER54 PE=... [more]
PER38_ARATH1.788e-2860.00Peroxidase 38 OS=Arabidopsis thaliana GN=PER38 PE=... [more]
PER34_ARATH2.335e-2861.00Peroxidase 34 OS=Arabidopsis thaliana GN=PER34 PE=... [more]
PER33_ARATH2.335e-2860.00Peroxidase 33 OS=Arabidopsis thaliana GN=PER33 PE=... [more]
PER53_ARATH3.049e-2864.00Peroxidase 53 OS=Arabidopsis thaliana GN=PER53 PE=... [more]
PER1C_ARMRU3.049e-2861.00Peroxidase C1C (Fragment) OS=Armoracia rusticana G... [more]
PER37_ARATH1.159e-2760.00Peroxidase 37 OS=Arabidopsis thaliana GN=PER37 PE=... [more]

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Properties
Property NameValue
Genbank descriptionC20001F06SK OF2 Citrus clementina cDNA clone C20001F06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX307769 ID=CX307769; Name=CX307769; organism=Citrus clementina; type=EST; length=384bp
AATTTCTCTTCAAAAGGAAAATGTCTCCTCTTCGTTATCTTCTTGCAGCA
GCTGTCCTTTTCGCGTTTGTGCTTGACGAATCATCATCTCAAGCTCAGCT
TACGCCAGATTTTTACAACACCACATGCCCTAATGCATCAAACATCATTC
TGGGTGTTCTTCAGAATGCTTTCAATTCCGATATCCGAATCACTGCCAGC
CTCATCAGGCTTCATTTTCATGACTGCTTTGTCAACGGCTGTGATGGGTC
AATCTTGCTGGACAACGTTGCCAATGATACGAGCATAGACAGCGAGAAAT
TTTCGATGGCAAATAATAATTCAGCAAGAGGTTTCGAAGTTGTTGATGCC
ATGAAAGCAGCCCTTGAGAGTGCCTGTCCTGGCA
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