CX307773

Overview
NameCX307773
Unique NameCX307773
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length403
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX307773 vs. ExPASy Swiss-Prot
Match: SRG1_ARATH (Protein SRG1 OS=Arabidopsis thaliana GN=SRG1 PE=2 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 1.789e-44
Identity = 84/132 (63.64%), Postives = 105/132 (79.55%), Query Frame = 2
Query:   14 SLLVPCVQELVKNPALV-VPDRYIRPDQDSPLISDDTLIS-QIPVIDMQSLLSKESMDSELAKLDFACKEWGFFQLVNHGMSTAFLEKLKKEVEGFFNLSMEEKKKYWQHPGDIEGFGQAFVVSEEQKLDWA 403
            S+LVP VQE+VK   +  VP RY+R DQD   + DD  +  +IP+IDM+ L S  +MDSE+ KLDFACKEWGFFQLVNHG+ ++FL+K+K E++ FFNL MEEKKK+WQ P +IEGFGQAFVVSE+QKLDWA
Sbjct:   11 SILVPSVQEMVKEKTITTVPPRYVRSDQDKTEVDDDFDVKIEIPIIDMKRLCSSTTMDSEVEKLDFACKEWGFFQLVNHGIDSSFLDKVKSEIQDFFNLPMEEKKKFWQRPDEIEGFGQAFVVSEDQKLDWA 142          
BLAST of CX307773 vs. ExPASy Swiss-Prot
Match: NCS1_COPJA (S-norcoclaurine synthase 1 OS=Coptis japonica GN=NCS1 PE=1 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 3.390e-27
Identity = 64/135 (47.41%), Postives = 85/135 (62.96%), Query Frame = 2
Query:    5 IARSLLVPCVQELVKNPALVVPDRYIRPD--QDSPLISDDTLISQIPVIDMQSLLSKESMDSELAKLDFACKEWGFFQLVNHGMSTAFLEKLKKEVEGFFNLSMEEKKKYWQHPGDIEGFGQAFVVSEEQKLDWA 403
            +  SL V  VQ L       +P+RY+RP+   D  +  D++L  +IPVID+  LL ++    ELAK   AC +WGFFQL+NHG+    +EK+K + E FF L  +EK  Y Q P  +EG+GQAFV SEEQKLDWA
Sbjct:    8 VGGSLPVENVQVLAGKELKNLPNRYVRPELEHDDVVPIDNSL--EIPVIDLSRLLDQQYACDELAKFHSACLDWGFFQLINHGVREEVIEKMKVDTEDFFRLPFKEKNAYRQLPNGMEGYGQAFVTSEEQKLDWA 140          
BLAST of CX307773 vs. ExPASy Swiss-Prot
Match: LDOX_ARATH (Leucoanthocyanidin dioxygenase OS=Arabidopsis thaliana GN=LDOX PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.131e-14
Identity = 45/133 (33.83%), Postives = 74/133 (55.64%), Query Frame = 2
Query:   32 VQELVKNPALVVPDRYIRPDQDSPLISDDTLIS------QIPVIDMQSLLSKESMDSE--LAKLDFACKEWGFFQLVNHGMSTAFLEKLKKEVEGFFNLSMEEKKKYW--QHPGDIEGFGQAFVVSEEQKLDW 400
            V+ L K+  + +P  YIRP ++   I+D  L        Q+P ID++++ S +    E  + +L  A  +WG   L+NHG+    +E++KK  E FF+LS+EEK+KY   Q  G I+G+G     +   +L+W
Sbjct:    7 VESLAKSGIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENCIEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLANNASGQLEW 139          
BLAST of CX307773 vs. ExPASy Swiss-Prot
Match: GAOX1_ARATH (Gibberellin 20 oxidase 1 OS=Arabidopsis thaliana GN=20ox1 PE=2 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 6.207e-13
Identity = 40/126 (31.75%), Postives = 71/126 (56.35%), Query Frame = 2
Query:   41 LVKNPALV-----VPDRYIRPDQDSPLISDDTLISQIPVIDMQSLLSKESMDSELAKL-DFACKEWGFFQLVNHGMSTAFLEKLKKEVEGFFNLSMEEKKKYWQHPGDIEGFGQAFVVSEEQKLDW 400
            L+ NP+++     +P+++I PD + P I+   L   +P+ID+Q+LLS  S   + ++L   ACK+ GFF +VNHG+S   +    +    FF++ + EK++  +  G+  G+  +F      KL W
Sbjct:   27 LIFNPSMLNLQANIPNQFIWPDDEKPSIN--VLELDVPLIDLQNLLSDPSSTLDASRLISEACKKHGFFLVVNHGISEELISDAHEYTSRFFDMPLSEKQRVLRKSGESVGYASSFTGRFSTKLPW 150          
BLAST of CX307773 vs. ExPASy Swiss-Prot
Match: LDOX_VITVI (Leucoanthocyanidin dioxygenase OS=Vitis vinifera PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.529e-11
Identity = 44/141 (31.21%), Postives = 69/141 (48.94%), Query Frame = 2
Query:   20 LVPCVQELVKNPALVVPDRYIRPDQDSPLISD------DTLISQIPVIDMQSLLSKESM------DSELAKLDFACKEWGFFQLVNHGMSTAFLEKLKKEVEGFFNLSMEEKKKYW--QHPGDIEGFGQAFVVSEEQKLDW 400
            + P V+ L  +    +P  YIRP ++   I +           Q+P ID++ + S++ +      +    +L  A  EWG   LVNHG+S   + ++K   E FFNL MEEK+KY   Q  G I G+G     +   +L+W
Sbjct:    5 VAPRVESLSSSGIQSIPKEYIRPQEELTSIGNVFEEEKKDEGPQVPTIDLKDIESEDEVVRREIRERCREELKKAAMEWGVMHLVNHGISDDLINRVKVAGETFFNLPMEEKEKYANDQASGKIAGYGSKLANNASGQLEW 145          
BLAST of CX307773 vs. ExPASy Swiss-Prot
Match: LDOX_PERFR (Leucoanthocyanidin dioxygenase OS=Perilla frutescens GN=ANS PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.608e-11
Identity = 37/136 (27.21%), Postives = 71/136 (52.21%), Query Frame = 2
Query:   26 PCVQELVKNPALVVPDRYIRPDQDSPLISDDTLIS-------QIPVIDMQSLLSKESMDSELA--KLDFACKEWGFFQLVNHGMSTAFLEKLKKEVEGFFNLSMEEKKKYW--QHPGDIEGFGQAFVVSEEQKLDW 400
            P V+EL ++    +P  Y+RP+++   I  + L         Q+P ID++ + S++    +    +L  A  +WG   L+NHG+    ++++K   + FF L +EEK+ Y   Q  G+++G+G     +   +L+W
Sbjct:   10 PRVEELARSGLDTIPKDYVRPEEELKSIIGNILAEEKSSEGPQLPTIDLEEMDSRDEEGRKKCHEELKKAATDWGVMHLINHGIPEELIDRVKAAGKEFFELPVEEKEAYANDQAAGNVQGYGSKLANNASGQLEW 145          
BLAST of CX307773 vs. ExPASy Swiss-Prot
Match: LDOX_MALDO (Leucoanthocyanidin dioxygenase OS=Malus domestica GN=ANS PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.406e-11
Identity = 42/133 (31.58%), Postives = 70/133 (52.63%), Query Frame = 2
Query:   32 VQELVKNPALVVPDRYIRPDQDSPLISD------DTLISQIPVIDMQSLLS-KESMDSELA-KLDFACKEWGFFQLVNHGMSTAFLEKLKKEVEGFFNLSMEEKKKYW--QHPGDIEGFGQAFVVSEEQKLDW 400
            V+ L  +    +P  YIRP  +   I D      +    Q+P ID++ + S  E + ++   KL  A  +WG   LVNHG+S   ++K++K  + FF+L +E+K+KY   Q  G I+G+G     +   +L+W
Sbjct:   11 VETLAGSGISTIPKEYIRPKDELVNIGDIFEQEKNNEGPQVPTIDLKEIESDNEKVRAKCREKLKKAAVDWGVMHLVNHGISDELMDKVRKAGKAFFDLPIEQKEKYANDQASGKIQGYGSKLANNASGQLEW 143          
BLAST of CX307773 vs. ExPASy Swiss-Prot
Match: GAO1D_WHEAT (Gibberellin 20 oxidase 1-D OS=Triticum aestivum GN=GA20ox1D PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.406e-11
Identity = 37/114 (32.46%), Postives = 64/114 (56.14%), Query Frame = 2
Query:   65 VPDRYIRPDQDSPLISDDTLISQIPVIDMQSLLSKE-SMDSELAKL-DFACKEWGFFQLVNHGMSTAFLEKLKKEVEGFFNLSMEEKKKYWQHPGDIEGFGQAFVVSEEQKLDW 400
            +P ++I P+ +SP   D      +P+ID+  +LS + +  +E+ +L   AC+  GFFQ+VNHG+    L    + V+ FF + + EK++  +HPG+  G+  +F      KL W
Sbjct:   17 IPSQFIWPEGESPT-PDAAEELHVPLIDIGGMLSGDPAAAAEVTRLVGEACERHGFFQVVNHGIDAELLADAHRCVDNFFTMPLPEKQRALRHPGESCGYASSFTGRFASKLPW 129          
BLAST of CX307773 vs. ExPASy Swiss-Prot
Match: LDOX_PETHY (Leucoanthocyanidin dioxygenase OS=Petunia hybrida GN=ANT17 PE=2 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.588e-11
Identity = 41/132 (31.06%), Postives = 68/132 (51.52%), Query Frame = 2
Query:   32 VQELVKNPALVVPDRYIRPDQDSPLISD------DTLISQIPVIDMQSLLSKESMDSELA-KLDFACKEWGFFQLVNHGMSTAFLEKLKKEVEGFFNLSMEEKKKYW--QHPGDIEGFGQAFVVSEEQKLDW 400
            V+ L K+    +P  Y+RP ++   I +           Q+P ID++ + S++    E   +L  A  EWG   LVNHG+S   + ++K   E FF+  +EEK+KY   Q  G+++G+G     S   +L+W
Sbjct:   12 VESLAKSGIQAIPKEYVRPQEELNGIGNIFEEEKKDEGPQVPTIDLKEIDSEDKEIREKCHQLKKAAMEWGVMHLVNHGISDELINRVKVAGETFFDQPVEEKEKYANDQANGNVQGYGSKLANSACGQLEW 143          
BLAST of CX307773 vs. ExPASy Swiss-Prot
Match: GAOX2_ARATH (Gibberellin 20 oxidase 2 OS=Arabidopsis thaliana GN=20ox2 PE=2 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.910e-11
Identity = 39/125 (31.20%), Postives = 67/125 (53.60%), Query Frame = 2
Query:   41 LVKNPALV-----VPDRYIRPDQDSPLISDDTLISQIPVIDMQSLLSKESMDSELAKLDFACKEWGFFQLVNHGMSTAFLEKLKKEVEGFFNLSMEEKKKYWQHPGDIEGFGQAFVVSEEQKLDW 400
            L+ NP+L+     +P+++I PD++ P I    L   +P ID+ S  S       +A+   AC + GFF +VNHG+S + +    + +E FF++ +  K+K  + PG+  G+  +F      KL W
Sbjct:   29 LIFNPSLLNLQSQIPNQFIWPDEEKPSIDIPEL--NVPFIDLSSQDSTLEAPRVIAE---ACTKHGFFLVVNHGVSESLIADAHRLMESFFDMPLAGKQKAQRKPGESCGYASSFTGRFSTKLPW 148          
The following BLAST results are available for this feature:
BLAST of CX307773 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
SRG1_ARATH1.789e-4463.64Protein SRG1 OS=Arabidopsis thaliana GN=SRG1 PE=2 ... [more]
NCS1_COPJA3.390e-2747.41S-norcoclaurine synthase 1 OS=Coptis japonica GN=N... [more]
LDOX_ARATH1.131e-1433.83Leucoanthocyanidin dioxygenase OS=Arabidopsis thal... [more]
GAOX1_ARATH6.207e-1331.75Gibberellin 20 oxidase 1 OS=Arabidopsis thaliana G... [more]
LDOX_VITVI1.529e-1131.21Leucoanthocyanidin dioxygenase OS=Vitis vinifera P... [more]
LDOX_PERFR2.608e-1127.21Leucoanthocyanidin dioxygenase OS=Perilla frutesce... [more]
LDOX_MALDO3.406e-1131.58Leucoanthocyanidin dioxygenase OS=Malus domestica ... [more]
GAO1D_WHEAT3.406e-1132.46Gibberellin 20 oxidase 1-D OS=Triticum aestivum GN... [more]
LDOX_PETHY7.588e-1131.06Leucoanthocyanidin dioxygenase OS=Petunia hybrida ... [more]
GAOX2_ARATH9.910e-1131.20Gibberellin 20 oxidase 2 OS=Arabidopsis thaliana G... [more]
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Properties
Property NameValue
Genbank descriptionC20001F11SK OF2 Citrus clementina cDNA clone C20001F11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX307773 ID=CX307773; Name=CX307773; organism=Citrus clementina; type=EST; length=403bp
CCAGATTGCAAGATCTCTCCTTGTGCCTTGTGTTCAAGAGTTGGTCAAGA
ATCCTGCGTTAGTTGTCCCCGACAGATACATACGTCCAGATCAAGATTCA
CCCCTCATTTCTGATGATACTTTGATTTCACAGATACCAGTTATTGACAT
GCAAAGCTTACTTTCTAAAGAATCAATGGATTCTGAGCTAGCCAAGCTCG
ACTTCGCATGCAAAGAATGGGGTTTTTTCCAGCTGGTAAATCATGGAATG
AGCACAGCATTTCTAGAGAAATTAAAGAAAGAGGTTGAGGGATTCTTCAA
TCTCAGCATGGAAGAAAAGAAAAAATATTGGCAGCATCCAGGAGATATAG
AAGGATTTGGACAAGCCTTTGTTGTATCCGAGGAACAAAAGCTTGATTGG
GCT
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