CX307774

Overview
NameCX307774
Unique NameCX307774
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length405
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX307774 vs. ExPASy Swiss-Prot
Match: CO058_MOUSE (UPF0580 protein C15orf58 homolog OS=Mus musculus PE=2 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 1.865e-17
Identity = 51/132 (38.64%), Postives = 76/132 (57.58%), Query Frame = 2
Query:    2 VIPGQYGFIAQLNEGRHLKKRPTEFRVDKVLQPFDGNKFNFTKVGQEEVLFQFEASEDGEVQFHPSAPIDVENSPSVVAINVSPIEYGHVLLIPRVLECLPQRIDRDSFLLALYMAAEAGNPYFRLGYNSLG 397
            ++PG  GF+AQLN  R +++R  +  +  V Q FD  +FNF K+   EVLF+ +    G     P+ P   +    +V INVSP+E+GHVLL+P   + LPQR+      + L     + +P FR+G+NSLG
Sbjct:   87 ILPGSVGFVAQLNIERGIQRRRPQ-NIRSVRQEFDPEQFNFNKIRPGEVLFRMQREPKG-----PATP--KQEDDVLVVINVSPLEWGHVLLVPAPAQGLPQRLLPGVLRVGLEAVLLSLHPGFRVGFNSLG 210          
BLAST of CX307774 vs. ExPASy Swiss-Prot
Match: CO058_XENTR (UPF0580 protein C15orf58 homolog OS=Xenopus tropicalis PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.181e-17
Identity = 52/157 (33.12%), Postives = 82/157 (52.23%), Query Frame = 2
Query:    2 VIPGQYGFIAQLNEGRHLKKRPTEFRVDKVLQPFDGNKFNFTKVGQEEVLFQFEASE-DGEVQFH----------------------PSAPIDVENSPSVVAINVSPIEYGHVLLIPRVLECLPQRIDRDSFLLALYMAAEAGNPYFRLGYNSLGAF 403
            ++PG   ++AQLN  R + +R  E  +  V Q F+ N+FN+ K+  EE++FQ   SE +  V  H                       S  ++ ++S ++V INVSP+E+GHVL +P    CLPQ +  +  L  +     + +P FR+G+NSLG F
Sbjct:   74 ILPGSVSYVAQLNIQRSINRRKPE-DIWSVQQKFNPNQFNYNKIKSEEIVFQMIRSEAEHSVDSHIVQGSMVNGMGSSECKSGSTPQGSCTLECKSSCTLVVINVSPLEFGHVLFMPDPSLCLPQILTENLMLFGMESVFLSSHPGFRVGFNSLGGF 229          
BLAST of CX307774 vs. ExPASy Swiss-Prot
Match: CO058_HUMAN (UPF0580 protein C15orf58 OS=Homo sapiens GN=C15orf58 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.181e-17
Identity = 50/132 (37.88%), Postives = 73/132 (55.30%), Query Frame = 2
Query:    2 VIPGQYGFIAQLNEGRHLKKRPTEFRVDKVLQPFDGNKFNFTKVGQEEVLFQFEASEDGEVQFHPSAPIDVENSPSVVAINVSPIEYGHVLLIPRVLECLPQRIDRDSFLLALYMAAEAGNPYFRLGYNSLG 397
            ++PG  GF+AQLN  R +++RP +  +  V Q FD  +FNF K+   EVLF+            P  P  +     +V INVSP+E+GHVLL+P     LPQR+   +    +     + +P FR+G+NSLG
Sbjct:   87 ILPGAVGFVAQLNVERGVQRRPPQ-TIKSVRQAFDPVQFNFNKIRPGEVLFRLHRE--------PDLPGTLLQEDILVVINVSPLEWGHVLLVPEPARQLPQRLLPGALRAGIEAVLLSLHPGFRVGFNSLG 209          
BLAST of CX307774 vs. ExPASy Swiss-Prot
Match: CO058_XENLA (UPF0580 protein C15orf58 homolog OS=Xenopus laevis PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.209e-16
Identity = 51/157 (32.48%), Postives = 80/157 (50.96%), Query Frame = 2
Query:    2 VIPGQYGFIAQLNEGRHLKKRPTEFRVDKVLQPFDGNKFNFTKVGQEEVLFQFEASEDGEV----QFHPSAP-------------------IDVENSPSVVAINVSPIEYGHVLLIPRVLECLPQRIDRDSFLLALYMAAEAGNPYFRLGYNSLGAF 403
            ++PG   ++AQLN  R + +R  E  +  + Q F+ N+FN+ K+  EE++FQ   SE        + H S+                    ++ +   ++V INVSP+E+GHVL +P    CLPQ +  D  L  L     + +P FR+G+NSLG F
Sbjct:   75 ILPGSLSYVAQLNIQRSINRRKPE-DIWSIQQKFNPNQFNYNKIKPEEIVFQMIRSETEHCVDSDKVHGSSVNGMGTSDCKSGSTHQRCCILECKGGCTLVVINVSPLEFGHVLFMPDPSLCLPQILTEDLMLFGLESVLLSAHPGFRVGFNSLGGF 230          
BLAST of CX307774 vs. ExPASy Swiss-Prot
Match: CO058_BOVIN (UPF0580 protein C15orf58 homolog OS=Bos taurus PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.692e-16
Identity = 48/131 (36.64%), Postives = 72/131 (54.96%), Query Frame = 2
Query:    5 IPGQYGFIAQLNEGRHLKKRPTEFRVDKVLQPFDGNKFNFTKVGQEEVLFQFEASEDGEVQFHPSAPIDVENSPSVVAINVSPIEYGHVLLIPRVLECLPQRIDRDSFLLALYMAAEAGNPYFRLGYNSLG 397
            +PG  GF+AQLN  R +++R  +  +  V Q FD  +FNF ++   EVLF+    +D            V+    +V INVSP+E+GHVLL+P     LPQR+   +    +     + +P FR+G+NSLG
Sbjct:   88 LPGTVGFVAQLNVERGVQRRCPQ-NIKSVRQEFDPEQFNFNQIRPGEVLFRLHRKQD--------CSGTVQQEDILVVINVSPLEWGHVLLVPEPARGLPQRLLPGALRAGVEAVLLSSHPGFRVGFNSLG 209          
BLAST of CX307774 vs. ExPASy Swiss-Prot
Match: CO058_MACFA (UPF0580 protein C15orf58 homolog OS=Macaca fascicularis GN=QflA-20034 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 4.593e-16
Identity = 48/132 (36.36%), Postives = 72/132 (54.55%), Query Frame = 2
Query:    2 VIPGQYGFIAQLNEGRHLKKRPTEFRVDKVLQPFDGNKFNFTKVGQEEVLFQFEASEDGEVQFHPSAPIDVENSPSVVAINVSPIEYGHVLLIPRVLECLPQRIDRDSFLLALYMAAEAGNPYFRLGYNSLG 397
            ++PG  GF+AQLN  R +++R  +  +  V Q FD  +FNF K+   EVL++            P  P  +     +V INVSP+E+GHVLL+P     LPQR+   +    +     + +P FR+G+NSLG
Sbjct:   87 ILPGVVGFVAQLNVERGVQRRRPQ-TIKSVRQAFDPEQFNFNKIQPGEVLYRLHRE--------PDLPGTLLQEDILVVINVSPLEWGHVLLVPEPARGLPQRLLPGALRAGIEAVLLSLHPGFRVGFNSLG 209          
BLAST of CX307774 vs. ExPASy Swiss-Prot
Match: CO058_DANRE (UPF0580 protein C15orf58 homolog OS=Danio rerio GN=zgc:153343 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.279e-15
Identity = 45/134 (33.58%), Postives = 71/134 (52.99%), Query Frame = 2
Query:    2 VIPGQYGFIAQLNEGRHLKKRPTEFRVDKVLQPFDGNKFNFTKVGQEEVLFQFEASEDGEVQFHPSAPIDVENSPSVVAINVSPIEYGHVLLIPRVLECLPQRIDRDSFLLALYMAAEAGNPYFRLGYNSLGAF 403
            ++PG  G+IAQLN  R  ++R  +  +  V Q FD  +FNF K+  +E+LF+ +   + +                 V INVSP+E+GH LL+P   +C PQ +   +    +     + +P FR+G+NSLG F
Sbjct:   59 ILPGSRGYIAQLNIMRGTERRKPQ-EILSVRQNFDPKQFNFNKINPKELLFELKRESERKCS---------------VIINVSPLEFGHCLLVPEPEKCFPQVLTHLAVQTGIETVLLSADPGFRVGFNSLGGF 176          
The following BLAST results are available for this feature:
BLAST of CX307774 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
CO058_MOUSE1.865e-1738.64UPF0580 protein C15orf58 homolog OS=Mus musculus P... [more]
CO058_XENTR3.181e-1733.12UPF0580 protein C15orf58 homolog OS=Xenopus tropic... [more]
CO058_HUMAN3.181e-1737.88UPF0580 protein C15orf58 OS=Homo sapiens GN=C15orf... [more]
CO058_XENLA1.209e-1632.48UPF0580 protein C15orf58 homolog OS=Xenopus laevis... [more]
CO058_BOVIN2.692e-1636.64UPF0580 protein C15orf58 homolog OS=Bos taurus PE=... [more]
CO058_MACFA4.593e-1636.36UPF0580 protein C15orf58 homolog OS=Macaca fascicu... [more]
CO058_DANRE2.279e-1533.58UPF0580 protein C15orf58 homolog OS=Danio rerio GN... [more]
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Properties
Property NameValue
Genbank descriptionC20001G01SK OF2 Citrus clementina cDNA clone C20001G01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX307774 ID=CX307774; Name=CX307774; organism=Citrus clementina; type=EST; length=405bp
GGTCATTCCTGGTCAGTATGGTTTCATTGCTCAACTGAACGAGGGCCGCC
ACCTGAAGAAAAGGCCTACTGAGTTCCGTGTTGATAAGGTCCTCCAGCCT
TTTGATGGGAACAAGTTCAACTTTACCAAAGTGGGGCAAGAAGAGGTGCT
CTTCCAGTTTGAGGCAAGCGAAGATGGTGAAGTCCAGTTTCACCCAAGTG
CCCCCATTGATGTTGAGAATTCTCCAAGTGTTGTTGCCATCAATGTGAGT
CCTATTGAGTACGGGCATGTGCTGTTGATCCCACGAGTTCTTGAGTGCTT
GCCACAGAGGATTGACCGTGATAGCTTCTTGCTCGCACTTTACATGGCTG
CAGAAGCTGGGAATCCATACTTCAGGTTGGGTTACAACAGCTTGGGTGCA
TTTGC
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