CX307778

Overview
NameCX307778
Unique NameCX307778
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length358
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX307778 vs. ExPASy Swiss-Prot
Match: AROA_ARATH (3-phosphoshikimate 1-carboxyvinyltransferase, chloroplastic OS=Arabidopsis thaliana GN=At2g45300 PE=2 SV=3)

HSP 1 Score: 160.999 bits (406), Expect = 1.718e-39
Identity = 79/119 (66.39%), Postives = 86/119 (72.27%), Query Frame = 2
Query:    2 ERPIGDLVTGLKQLGADVDCILGTNCPPVRINXXXXXXXXXXXXXXXXXXQYXXXXXXXXXXXXGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGGQKYKSPGNAF 358
            ERPIGDLV GLKQLGADV+C LGTNCPPVR+N                  QY            G+VEIEI+DKLISVPYVEMTLKLMERFGV VEHSDSWDRFF++GGQKYKSPGNA+
Sbjct:  206 ERPIGDLVVGLKQLGADVECTLGTNCPPVRVNANGGLPGGKVKLSGSISSQYLTALLMSAPLALGDVEIEIVDKLISVPYVEMTLKLMERFGVSVEHSDSWDRFFVKGGQKYKSPGNAY 324          
BLAST of CX307778 vs. ExPASy Swiss-Prot
Match: AROA_BRANA (3-phosphoshikimate 1-carboxyvinyltransferase, chloroplastic OS=Brassica napus PE=3 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 3.827e-39
Identity = 79/119 (66.39%), Postives = 85/119 (71.43%), Query Frame = 2
Query:    2 ERPIGDLVTGLKQLGADVDCILGTNCPPVRINXXXXXXXXXXXXXXXXXXQYXXXXXXXXXXXXGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGGQKYKSPGNAF 358
            ERPIGDLV GLKQLGADV+C LGTNCPPVR+N                  QY            G+VEIEIIDKLISVPYVEMTLKLMERFGV  EHSDSWDRFF++GGQKYKSPGNA+
Sbjct:  202 ERPIGDLVVGLKQLGADVECTLGTNCPPVRVNANGGLPGGKVKLSGSISSQYLTALLMAAPLALGDVEIEIIDKLISVPYVEMTLKLMERFGVSAEHSDSWDRFFVKGGQKYKSPGNAY 320          
BLAST of CX307778 vs. ExPASy Swiss-Prot
Match: AROA_SOLLC (3-phosphoshikimate 1-carboxyvinyltransferase, chloroplastic OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 3.582e-37
Identity = 78/119 (65.55%), Postives = 82/119 (68.91%), Query Frame = 2
Query:    2 ERPIGDLVTGLKQLGADVDCILGTNCPPVRINXXXXXXXXXXXXXXXXXXQYXXXXXXXXXXXXGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGGQKYKSPGNAF 358
            ERPIGDLV GLKQLGA+VDC LGTNCPPVRI                   QY            G+VEIEIIDKLISVPYVEMTLKLMERFGVFVEHS  WDRF ++GGQKYKSPG AF
Sbjct:  206 ERPIGDLVDGLKQLGAEVDCSLGTNCPPVRIVSKGGLPGGKVKLSGSISSQYLTALLMAAPLALGDVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSSGWDRFLVKGGQKYKSPGKAF 324          
BLAST of CX307778 vs. ExPASy Swiss-Prot
Match: AROA_PETHY (3-phosphoshikimate 1-carboxyvinyltransferase, chloroplastic OS=Petunia hybrida PE=1 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 3.961e-36
Identity = 76/119 (63.87%), Postives = 81/119 (68.07%), Query Frame = 2
Query:    2 ERPIGDLVTGLKQLGADVDCILGTNCPPVRINXXXXXXXXXXXXXXXXXXQYXXXXXXXXXXXXGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGGQKYKSPGNAF 358
            ERPI DLV GLKQLGA+VDC LGT CPPVRI                   QY            G+VEIEIIDKLISVPYVEMTLKLMERFG+ VEHS SWDRFF++GGQKYKSPG AF
Sbjct:  202 ERPISDLVDGLKQLGAEVDCFLGTKCPPVRIVSKGGLPGGKVKLSGSISSQYLTALLMAAPLALGDVEIEIIDKLISVPYVEMTLKLMERFGISVEHSSSWDRFFVRGGQKYKSPGKAF 320          
BLAST of CX307778 vs. ExPASy Swiss-Prot
Match: AROA1_TOBAC (3-phosphoshikimate 1-carboxyvinyltransferase 1, chloroplastic OS=Nicotiana tabacum GN=EPSPS-1 PE=2 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 6.756e-36
Identity = 75/119 (63.03%), Postives = 82/119 (68.91%), Query Frame = 2
Query:    2 ERPIGDLVTGLKQLGADVDCILGTNCPPVRINXXXXXXXXXXXXXXXXXXQYXXXXXXXXXXXXGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGGQKYKSPGNAF 358
            ERPIGDLV GLKQLGA+VDC LGTNCPPVRI                   QY            G+VEIEIIDKLISVPYVEMTLKLMERFGV VEH+ SWD+F ++GGQKYKSPG A+
Sbjct:  204 ERPIGDLVDGLKQLGAEVDCFLGTNCPPVRIVSKGGLPGGKVKLSGSISSQYLTALLMAAPLALGDVEIEIIDKLISVPYVEMTLKLMERFGVSVEHTSSWDKFLVRGGQKYKSPGKAY 322          
BLAST of CX307778 vs. ExPASy Swiss-Prot
Match: AROA2_TOBAC (3-phosphoshikimate 1-carboxyvinyltransferase 2 (Fragment) OS=Nicotiana tabacum GN=EPSPS-2 PE=2 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 1.664e-34
Identity = 74/119 (62.18%), Postives = 80/119 (67.23%), Query Frame = 2
Query:    2 ERPIGDLVTGLKQLGADVDCILGTNCPPVRINXXXXXXXXXXXXXXXXXXQYXXXXXXXXXXXXGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGGQKYKSPGNAF 358
            ERPIGDLV GLKQLGA+VDC LGT CPPVRI                   QY            G+VEIEIIDKLISV YVEMTLKLMERFG+ VEHS SWDRF ++GGQKYKSPG A+
Sbjct:   24 ERPIGDLVDGLKQLGAEVDCFLGTKCPPVRIVSKGGLPGGKVKLSGSISSQYLTALLMAAPLALGDVEIEIIDKLISVLYVEMTLKLMERFGISVEHSSSWDRFVVRGGQKYKSPGKAY 142          
BLAST of CX307778 vs. ExPASy Swiss-Prot
Match: AROA_BURS3 (3-phosphoshikimate 1-carboxyvinyltransferase OS=Burkholderia sp. (strain 383) GN=aroA PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.044e-16
Identity = 46/119 (38.66%), Postives = 63/119 (52.94%), Query Frame = 2
Query:    2 ERPIGDLVTGLKQLGADVDCILGTNCPPVRINXXXXXXXXXXXXXXXXXXQY---XXXXXXXXXXXXGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGGQKYKSPG 349
            ERPIGDLV GL+Q+GA +D  L    PP+RI                   Q+               G + +E+  +LIS PY+++T++LMERFGV VE  D W RF +  G +Y+SPG
Sbjct:  120 ERPIGDLVDGLRQIGAQIDYELNEGYPPLRIKPANISVDAPIRVRGDVSSQFLTALLMTLPLVKAKDGKIVVEVDGELISKPYIDITIRLMERFGVTVER-DGWQRFVVPAGVRYRSPG 237          
BLAST of CX307778 vs. ExPASy Swiss-Prot
Match: AROA_RALEJ (3-phosphoshikimate 1-carboxyvinyltransferase OS=Ralstonia eutropha (strain JMP134) GN=aroA PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 7.766e-16
Identity = 44/122 (36.07%), Postives = 62/122 (50.82%), Query Frame = 2
Query:    2 ERPIGDLVTGLKQLGADVDCILGTNCPPVRINXXXXXXXXXXXXXXXXXXQYXXXXXXXXXXXX---GNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGGQKYKSPGNAF 358
            ERPIGDLV GL+Q+GAD+  +     PP+ I                   Q+               G +EIE++ +LIS PY+E+TL L+ RFG+ VE    W+RF +  G  Y+SPG  +
Sbjct:  120 ERPIGDLVDGLRQVGADIGYLANEGFPPLHIRPAQIRIDAPIRVRGDVSSQFLTALLMTLPMAQAANGKIEIEVVGELISKPYIEITLNLLARFGINVER-QGWERFIVPAGAVYRSPGEIY 240          
BLAST of CX307778 vs. ExPASy Swiss-Prot
Match: AROA_BURVG (3-phosphoshikimate 1-carboxyvinyltransferase OS=Burkholderia vietnamiensis (strain G4 / LMG 22486) GN=aroA PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.014e-15
Identity = 45/119 (37.82%), Postives = 62/119 (52.10%), Query Frame = 2
Query:    2 ERPIGDLVTGLKQLGADVDCILGTNCPPVRINXXXXXXXXXXXXXXXXXXQYXXXXXXXXXXXX---GNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGGQKYKSPG 349
            ERPIGDLV GL+Q+GA +D       PP+RI                   Q+               G + +E+  +LIS PY+++T++LMERFGV VE  D W RF +  G +Y+SPG
Sbjct:  120 ERPIGDLVDGLRQIGAQIDYEQNEGFPPLRIKPAAITVDAPIRVRGDVSSQFLTALLMTLPLVKAKDGKIVVEVDGELISKPYIDITIRLMERFGVTVER-DGWQRFVVPAGVRYRSPG 237          
BLAST of CX307778 vs. ExPASy Swiss-Prot
Match: AROA_BURCC (3-phosphoshikimate 1-carboxyvinyltransferase OS=Burkholderia cenocepacia (strain MC0-3) GN=aroA PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.014e-15
Identity = 46/119 (38.66%), Postives = 61/119 (51.26%), Query Frame = 2
Query:    2 ERPIGDLVTGLKQLGADVDCILGTNCPPVRINXXXXXXXXXXXXXXXXXXQY---XXXXXXXXXXXXGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGGQKYKSPG 349
            ERPIGDLV GL+Q+GA +D  L    PP+RI                   Q+               G   +E+  +LIS PY+++T++LM RFGV VE  D W RF +  G +YKSPG
Sbjct:  120 ERPIGDLVDGLRQIGAQIDYELNEGYPPLRIKPATISVDAPIRVRGDVSSQFLTALLMTLPLVKAKDGRTVVEVDGELISKPYIDITIRLMARFGVTVER-DGWQRFVVPAGVRYKSPG 237          
The following BLAST results are available for this feature:
BLAST of CX307778 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
AROA_ARATH1.718e-3966.393-phosphoshikimate 1-carboxyvinyltransferase, chlo... [more]
AROA_BRANA3.827e-3966.393-phosphoshikimate 1-carboxyvinyltransferase, chlo... [more]
AROA_SOLLC3.582e-3765.553-phosphoshikimate 1-carboxyvinyltransferase, chlo... [more]
AROA_PETHY3.961e-3663.873-phosphoshikimate 1-carboxyvinyltransferase, chlo... [more]
AROA1_TOBAC6.756e-3663.033-phosphoshikimate 1-carboxyvinyltransferase 1, ch... [more]
AROA2_TOBAC1.664e-3462.183-phosphoshikimate 1-carboxyvinyltransferase 2 (Fr... [more]
AROA_BURS32.044e-1638.663-phosphoshikimate 1-carboxyvinyltransferase OS=Bu... [more]
AROA_RALEJ7.766e-1636.073-phosphoshikimate 1-carboxyvinyltransferase OS=Ra... [more]
AROA_BURVG1.014e-1537.823-phosphoshikimate 1-carboxyvinyltransferase OS=Bu... [more]
AROA_BURCC1.014e-1538.663-phosphoshikimate 1-carboxyvinyltransferase OS=Bu... [more]

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Properties
Property NameValue
Genbank descriptionC20001G07SK OF2 Citrus clementina cDNA clone C20001G07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX307778 ID=CX307778; Name=CX307778; organism=Citrus clementina; type=EST; length=358bp
GGAGAGACCAATTGGAGACTTGGTCACTGGTCTGAAGCAGCTAGGTGCAG
ATGTAGATTGCATTTTAGGCACAAATTGCCCCCCTGTTCGTATCAATGGA
AAGGGAGGCCTCCCTGGGGGAAAGGTGAAACTCTCTGGAAAGCTTAGTAG
TCAATACTTGACTGCTTTGCTCATGGCAGCTCCCTTGGCCCTCGGAAATG
TGGAAATTGAAATAATTGATAAACTGATTTCCGTTCCTTATGTTGAGATG
ACTCTGAAGTTGATGGAGCGTTTTGGGGTCTTTGTAGAGCACAGTGATAG
CTGGGATCGGTTCTTCATCCAGGGGGGTCAAAAGTACAAGTCTCCTGGAA
ATGCTTTT
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