CX307779

Overview
NameCX307779
Unique NameCX307779
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length369
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX307779 vs. ExPASy Swiss-Prot
Match: TCTP_HEVBR (Translationally-controlled tumor protein homolog OS=Hevea brasiliensis GN=TCTP PE=2 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 9.587e-43
Identity = 87/105 (82.86%), Postives = 87/105 (82.86%), Query Frame = 1
Query:   55 MLVYQDLLTGDELLSDSFPYKEIENGILWEVEGKWVVQGAVDVDIGANPSXXXXXXXXXXXXXXXKVVDIVDTFRLQEQPAFDKKPFVTYMKRFIKLLTPKLSEE 369
            MLVYQDLLTGDELLSDSFPYKEI NGILWEVEGKWVVQGAVDVDIGANPS               KVVDIVDTFRLQEQPAFDKK FVTYMKRFIKLLTPKL EE
Sbjct:    1 MLVYQDLLTGDELLSDSFPYKEIHNGILWEVEGKWVVQGAVDVDIGANPSAEGADEDEGVDDQAVKVVDIVDTFRLQEQPAFDKKQFVTYMKRFIKLLTPKLDEE 105          
BLAST of CX307779 vs. ExPASy Swiss-Prot
Match: TCTP_SOYBN (Translationally-controlled tumor protein homolog OS=Glycine max GN=TCTP PE=2 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 1.692e-39
Identity = 82/105 (78.10%), Postives = 85/105 (80.95%), Query Frame = 1
Query:   55 MLVYQDLLTGDELLSDSFPYKEIENGILWEVEGKWVVQGAVDVDIGANPSXXXXXXXXXXXXXXXKVVDIVDTFRLQEQPAFDKKPFVTYMKRFIKLLTPKLSEE 369
            MLVYQDLLTGDELLSDSF YKEIENG+LWEVEGKWVV+GAVDVDIGANPS               KVVDIVDTFRLQEQPAFDKK FVT+MKRFIK LTPKL  E
Sbjct:    1 MLVYQDLLTGDELLSDSFRYKEIENGMLWEVEGKWVVKGAVDVDIGANPSAEGGGEDEGVDDAAVKVVDIVDTFRLQEQPAFDKKQFVTFMKRFIKNLTPKLDAE 105          
BLAST of CX307779 vs. ExPASy Swiss-Prot
Match: TCTP_SOLLC (Translationally-controlled tumor protein homolog OS=Solanum lycopersicum GN=TCTP PE=2 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 2.210e-39
Identity = 79/105 (75.24%), Postives = 86/105 (81.90%), Query Frame = 1
Query:   55 MLVYQDLLTGDELLSDSFPYKEIENGILWEVEGKWVVQGAVDVDIGANPSXXXXXXXXXXXXXXXKVVDIVDTFRLQEQPAFDKKPFVTYMKRFIKLLTPKLSEE 369
            MLVYQDLLTGDELLSDSFPYKE+ENG+LWEV+GKWVVQGAVDV+IGANPS               +VVDIVDTFRLQEQPAFDKK FVT+MKR+IK LTPKL  E
Sbjct:    1 MLVYQDLLTGDELLSDSFPYKEVENGVLWEVQGKWVVQGAVDVNIGANPSAEGGCEDEGVDDQAVRVVDIVDTFRLQEQPAFDKKQFVTFMKRYIKNLTPKLEGE 105          
BLAST of CX307779 vs. ExPASy Swiss-Prot
Match: TCTP_ELAGV (Translationally-controlled tumor protein homolog OS=Elaeis guineensis var. tenera GN=TCTP PE=2 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 2.210e-39
Identity = 80/105 (76.19%), Postives = 85/105 (80.95%), Query Frame = 1
Query:   55 MLVYQDLLTGDELLSDSFPYKEIENGILWEVEGKWVVQGAVDVDIGANPSXXXXXXXXXXXXXXXKVVDIVDTFRLQEQPAFDKKPFVTYMKRFIKLLTPKLSEE 369
            MLVYQDLLTGDELLSDSFPYKEI NG+LWEVEGKWV+QGAV+VDIGANPS               KVVDIVDTFRLQEQPAFDKK FVT+MKR+IK LTPKL  E
Sbjct:    1 MLVYQDLLTGDELLSDSFPYKEIHNGMLWEVEGKWVIQGAVNVDIGANPSAEGGEEDEGVDDQAVKVVDIVDTFRLQEQPAFDKKQFVTFMKRYIKNLTPKLDAE 105          
BLAST of CX307779 vs. ExPASy Swiss-Prot
Match: TCTP_SOLTU (Translationally-controlled tumor protein homolog OS=Solanum tuberosum GN=TCTP PE=2 SV=2)

HSP 1 Score: 160.229 bits (404), Expect = 2.887e-39
Identity = 80/105 (76.19%), Postives = 86/105 (81.90%), Query Frame = 1
Query:   55 MLVYQDLLTGDELLSDSFPYKEIENGILWEVEGKWVVQGAVDVDIGANPSXXXXXXXXXXXXXXXKVVDIVDTFRLQEQPAFDKKPFVTYMKRFIKLLTPKLSEE 369
            MLVYQDLLTGDELLSDSFPYKEI+NG+LWEV+GKWVVQGAVDV+IGANPS               KVVDIVDTFRLQEQPAFDKK FVTY+KR+IK LTPKL  E
Sbjct:    1 MLVYQDLLTGDELLSDSFPYKEIQNGMLWEVQGKWVVQGAVDVNIGANPSAEGGGEDEGVDDQAVKVVDIVDTFRLQEQPAFDKKQFVTYIKRYIKNLTPKLEGE 105          
BLAST of CX307779 vs. ExPASy Swiss-Prot
Match: TCTP_ARATH (Translationally-controlled tumor protein homolog OS=Arabidopsis thaliana GN=TCTP PE=1 SV=2)

HSP 1 Score: 159.844 bits (403), Expect = 3.770e-39
Identity = 79/105 (75.24%), Postives = 85/105 (80.95%), Query Frame = 1
Query:   55 MLVYQDLLTGDELLSDSFPYKEIENGILWEVEGKWVVQGAVDVDIGANPSXXXXXXXXXXXXXXXKVVDIVDTFRLQEQPAFDKKPFVTYMKRFIKLLTPKLSEE 369
            MLVYQDLLTGDELLSDSFPYKEIENGILWEVEGKWV  GAVDV+IGANPS               KVVDIVDTFRLQEQP +DKK F+ Y+K++IKLLTPKLSEE
Sbjct:    1 MLVYQDLLTGDELLSDSFPYKEIENGILWEVEGKWVTVGAVDVNIGANPSAEEGGEDEGVDDSTQKVVDIVDTFRLQEQPTYDKKGFIAYIKKYIKLLTPKLSEE 105          
BLAST of CX307779 vs. ExPASy Swiss-Prot
Match: TCTP_CUCMA (Translationally-controlled tumor protein homolog OS=Cucurbita maxima GN=TCTP PE=2 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 4.924e-39
Identity = 78/105 (74.29%), Postives = 84/105 (80.00%), Query Frame = 1
Query:   55 MLVYQDLLTGDELLSDSFPYKEIENGILWEVEGKWVVQGAVDVDIGANPSXXXXXXXXXXXXXXXKVVDIVDTFRLQEQPAFDKKPFVTYMKRFIKLLTPKLSEE 369
            MLVYQDLLTGDELLSDSFPYKE+ENG++WEVEGKWVVQGAVDVDIGANPS               KVVDIVDTFRLQEQP  DKK F+ Y+K+FIKLLTPKL  E
Sbjct:    1 MLVYQDLLTGDELLSDSFPYKELENGMIWEVEGKWVVQGAVDVDIGANPSAEGDGEDEGVDDQAVKVVDIVDTFRLQEQPTMDKKQFIAYIKKFIKLLTPKLEGE 105          
BLAST of CX307779 vs. ExPASy Swiss-Prot
Match: TCTP_ORYSJ (Translationally-controlled tumor protein homolog OS=Oryza sativa subsp. japonica GN=TCTP PE=1 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 3.191e-38
Identity = 78/105 (74.29%), Postives = 84/105 (80.00%), Query Frame = 1
Query:   55 MLVYQDLLTGDELLSDSFPYKEIENGILWEVEGKWVVQGAVDVDIGANPSXXXXXXXXXXXXXXXKVVDIVDTFRLQEQPAFDKKPFVTYMKRFIKLLTPKLSEE 369
            MLVYQDLLTGDELLSDSFPY+EIENGILWEV+GKWVVQGA+DVDIGANPS               KVVDIVDTFRLQEQP FDKK FVT+MKR+IK L+ KL  E
Sbjct:    1 MLVYQDLLTGDELLSDSFPYREIENGILWEVDGKWVVQGAIDVDIGANPSAEGGGDDEGVDDQAVKVVDIVDTFRLQEQPPFDKKQFVTFMKRYIKNLSAKLDAE 105          
BLAST of CX307779 vs. ExPASy Swiss-Prot
Match: TCTP_FRAAN (Translationally-controlled tumor protein homolog OS=Fragaria ananassa GN=TCTP PE=2 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 9.286e-38
Identity = 79/107 (73.83%), Postives = 86/107 (80.37%), Query Frame = 1
Query:   55 MLVYQDLLTGDELLSDSFPYKEIENGILWEVEGKWVVQGAVDVDIGANPS--XXXXXXXXXXXXXXXKVVDIVDTFRLQEQPAFDKKPFVTYMKRFIKLLTPKLSEE 369
            MLVYQDLL+GDELLSDSFPYKEI+NG+LWEV+GKWVVQGAVDVDIGANPS                 KVVDIVDTFRLQEQP FDKK FVT++KR+IKLLTPKL  E
Sbjct:    1 MLVYQDLLSGDELLSDSFPYKEIQNGVLWEVDGKWVVQGAVDVDIGANPSAEGADADADEGVDDQTVKVVDIVDTFRLQEQPPFDKKQFVTWVKRYIKLLTPKLEGE 107          
BLAST of CX307779 vs. ExPASy Swiss-Prot
Match: TCTP_HORVU (Translationally-controlled tumor protein homolog OS=Hordeum vulgare GN=TCTP PE=2 SV=2)

HSP 1 Score: 150.599 bits (379), Expect = 2.287e-36
Identity = 74/105 (70.48%), Postives = 82/105 (78.10%), Query Frame = 1
Query:   55 MLVYQDLLTGDELLSDSFPYKEIENGILWEVEGKWVVQGAVDVDIGANPSXXXXXXXXXXXXXXXKVVDIVDTFRLQEQPAFDKKPFVTYMKRFIKLLTPKLSEE 369
            MLVYQD L+GDELLSDSFPY+E+ENG+LWEV+G WVVQGAVDVDIGANPS               KVVDIVDTFRLQEQPAFDKK F+ Y+KR+IK LT KL  E
Sbjct:    1 MLVYQDKLSGDELLSDSFPYRELENGVLWEVDGHWVVQGAVDVDIGANPSAEGGGEDEGVDDQAVKVVDIVDTFRLQEQPAFDKKQFIAYIKRYIKNLTAKLEGE 105          
The following BLAST results are available for this feature:
BLAST of CX307779 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 29
Match NameE-valueIdentityDescription
TCTP_HEVBR9.587e-4382.86Translationally-controlled tumor protein homolog O... [more]
TCTP_SOYBN1.692e-3978.10Translationally-controlled tumor protein homolog O... [more]
TCTP_SOLLC2.210e-3975.24Translationally-controlled tumor protein homolog O... [more]
TCTP_ELAGV2.210e-3976.19Translationally-controlled tumor protein homolog O... [more]
TCTP_SOLTU2.887e-3976.19Translationally-controlled tumor protein homolog O... [more]
TCTP_ARATH3.770e-3975.24Translationally-controlled tumor protein homolog O... [more]
TCTP_CUCMA4.924e-3974.29Translationally-controlled tumor protein homolog O... [more]
TCTP_ORYSJ3.191e-3874.29Translationally-controlled tumor protein homolog O... [more]
TCTP_FRAAN9.286e-3873.83Translationally-controlled tumor protein homolog O... [more]
TCTP_HORVU2.287e-3670.48Translationally-controlled tumor protein homolog O... [more]

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Properties
Property NameValue
Genbank descriptionC20001G08SK OF2 Citrus clementina cDNA clone C20001G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX307779 ID=CX307779; Name=CX307779; organism=Citrus clementina; type=EST; length=369bp
AGTTTTCTCCGTTGATTGTTTTTCTTTTTTGTGTTCGCGAGAGAGACTGC
AATCATGTTGGTCTATCAAGATCTCCTCACCGGTGATGAGCTTCTCTCCG
ACTCTTTTCCCTACAAGGAAATTGAGAATGGGATTCTGTGGGAAGTTGAG
GGAAAGTGGGTTGTACAAGGAGCCGTTGATGTTGACATTGGTGCAAATCC
TTCTGCCGAAGGAGCTGATGAGGATGAGGGTGTTGATGACCAAGCCGTGA
AGGTGGTCGACATTGTCGACACATTCAGGCTACAGGAGCAACCCGCTTTT
GACAAGAAGCCGTTTGTAACATACATGAAGAGATTCATCAAGTTGCTGAC
GCCCAAGCTGAGTGAGGAG
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